Wall clock time and date at job start Tue Mar 31 2020 02:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46921 * 128.50846 * 3 2 1 5 5 C 1.37092 * 120.00059 * 271.87502 * 4 3 2 6 6 H 1.07999 * 120.00200 * 205.93823 * 5 4 3 7 7 C 1.38952 * 119.99770 * 25.93942 * 5 4 3 8 8 N 1.31410 * 119.99952 * 30.00896 * 7 5 4 9 9 Si 1.86801 * 119.99785 * 210.00419 * 7 5 4 10 10 H 1.48500 * 109.47357 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46815 * 120.00209 * 9 7 5 12 12 H 1.48497 * 109.47452 * 239.99754 * 9 7 5 13 13 C 1.34784 * 119.99794 * 91.87902 * 4 3 2 14 14 O 1.21283 * 120.00108 * 2.12702 * 13 4 3 15 15 C 1.50704 * 119.99672 * 182.12821 * 13 4 3 16 16 C 1.52991 * 109.47214 * 49.61725 * 15 13 4 17 17 C 1.53005 * 109.47104 * 289.61875 * 15 13 4 18 18 C 1.52994 * 109.47085 * 169.62072 * 15 13 4 19 19 N 1.46902 * 109.47180 * 186.44728 * 18 15 13 20 20 C 1.47011 * 111.00022 * 272.34766 * 19 18 15 21 21 C 1.53094 * 109.25513 * 177.60687 * 20 19 18 22 22 O 1.43020 * 109.26013 * 56.85231 * 21 20 19 23 23 C 1.43016 * 113.73587 * 301.32405 * 22 21 20 24 24 C 1.47016 * 110.99938 * 148.71408 * 19 18 15 25 25 H 4.40639 * 5.51437 * 180.02562 * 4 1 2 26 26 H 1.08997 * 109.47592 * 8.50636 * 3 2 1 27 27 H 1.09003 * 109.47122 * 248.50776 * 3 2 1 28 28 H 0.97006 * 119.99835 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.47285 * 168.45278 * 16 15 13 30 30 H 1.09005 * 109.47558 * 288.45517 * 16 15 13 31 31 H 1.09005 * 109.47143 * 48.45303 * 16 15 13 32 32 H 1.08998 * 109.47224 * 288.28698 * 17 15 13 33 33 H 1.09005 * 109.47237 * 48.28209 * 17 15 13 34 34 H 1.08992 * 109.47322 * 168.28419 * 17 15 13 35 35 H 1.09001 * 109.47116 * 66.44578 * 18 15 13 36 36 H 1.09001 * 109.47154 * 306.44646 * 18 15 13 37 37 H 1.08993 * 109.50681 * 297.54324 * 20 19 18 38 38 H 1.09004 * 109.50580 * 57.67133 * 20 19 18 39 39 H 1.08998 * 109.51274 * 296.91151 * 21 20 19 40 40 H 1.09005 * 109.54112 * 176.80930 * 21 20 19 41 41 H 1.08999 * 109.50902 * 298.73723 * 23 22 21 42 42 H 1.08996 * 109.53892 * 178.62156 * 23 22 21 43 43 H 1.09004 * 109.50274 * 302.32893 * 24 19 18 44 44 H 1.08996 * 109.50520 * 62.41377 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8609 -1.0808 5 6 3.3260 0.3429 -2.3355 6 1 4.0426 0.7974 -3.0035 7 6 2.5986 -0.7670 -2.7477 8 7 1.3907 -0.9741 -2.2735 9 14 3.3379 -1.9646 -3.9760 10 1 4.7002 -1.5092 -4.3530 11 1 3.4197 -3.3147 -3.3631 12 1 2.4817 -2.0223 -5.1880 13 6 3.3940 2.1615 -0.8416 14 8 3.2611 2.6108 0.2771 15 6 3.8500 3.0576 -1.9643 16 6 2.9134 2.8908 -3.1624 17 6 5.2744 2.6776 -2.3737 18 6 3.8253 4.5140 -1.4964 19 7 4.1199 5.3982 -2.6320 20 6 5.5685 5.5995 -2.7810 21 6 5.8329 6.4757 -4.0082 22 8 5.1264 7.7111 -3.8668 23 6 3.7127 7.5523 -3.7201 24 6 3.4268 6.6869 -2.4899 25 1 -1.0501 0.0000 0.0003 26 1 3.0099 -1.0155 -0.1520 27 1 3.0092 0.3773 0.9562 28 1 0.8828 -1.7487 -2.5616 29 1 3.1127 3.6762 -3.8915 30 1 3.0815 1.9169 -3.6223 31 1 1.8785 2.9604 -2.8271 32 1 5.9715 2.9896 -1.5960 33 1 5.3384 1.5976 -2.5067 34 1 5.5283 3.1746 -3.3098 35 1 4.5755 4.6587 -0.7190 36 1 2.8388 4.7510 -1.0979 37 1 5.9611 6.0914 -1.8911 38 1 6.0587 4.6345 -2.9103 39 1 5.4887 5.9601 -4.9047 40 1 6.9015 6.6748 -4.0906 41 1 3.3068 7.0679 -4.6082 42 1 3.2472 8.5297 -3.5936 43 1 2.3535 6.5157 -2.4068 44 1 3.7846 7.1959 -1.5950 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822681265.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:50 Heat of formation + Delta-G solvation = 10.728615 kcal Electronic energy + Delta-G solvation = -25357.361178 eV Core-core repulsion = 21891.933056 eV Total energy + Delta-G solvation = -3465.428122 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.88778 -38.89713 -36.25979 -35.03320 -33.51374 -31.77113 -31.25648 -31.06972 -28.02021 -26.71145 -26.08283 -25.08590 -24.12048 -23.75041 -21.05528 -20.22961 -18.59661 -17.73011 -16.70739 -16.24800 -16.10979 -15.58537 -15.05708 -15.02966 -14.71950 -14.48052 -14.15433 -13.95733 -13.60169 -13.17160 -12.89743 -12.71094 -12.41002 -12.07393 -11.94470 -11.82907 -11.70067 -11.36563 -11.20233 -11.07518 -11.03214 -10.76903 -10.67262 -10.42426 -10.35688 -10.11962 -9.75834 -9.43833 -9.20576 -9.07075 -8.73453 -8.25266 -8.09896 -7.79273 -6.29418 -3.91868 3.07990 3.22506 3.24612 3.69301 3.82935 3.96097 4.08494 4.18946 4.33588 4.92893 4.94631 5.03467 5.07673 5.15089 5.21406 5.31186 5.54954 5.56699 5.58722 5.64833 5.75635 5.78940 5.86033 5.89369 5.98063 6.10264 6.22192 6.32719 6.38305 6.58035 6.62248 6.65083 6.69693 6.99969 7.03333 7.09398 7.18882 7.21726 7.24540 7.37358 7.50233 7.75279 8.29659 9.05568 9.11708 9.45172 9.87937 10.59584 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.004932 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.551829 B = 5676.283445 C = 6379.879849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.108 4.108 3 C 0.236 3.764 4 N -0.432 5.432 5 C -0.358 4.358 6 H 0.115 0.885 7 C 0.044 3.956 8 N -0.822 5.822 9 Si 0.897 3.103 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.283 1.283 13 C 0.474 3.526 14 O -0.611 6.611 15 C -0.048 4.048 16 C -0.135 4.135 17 C -0.147 4.147 18 C 0.084 3.916 19 N -0.529 5.529 20 C 0.003 3.997 21 C 0.064 3.936 22 O -0.391 6.391 23 C 0.065 3.935 24 C 0.018 3.982 25 H 0.194 0.806 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.267 0.733 29 H 0.054 0.946 30 H 0.092 0.908 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.042 0.958 36 H 0.071 0.929 37 H 0.037 0.963 38 H 0.102 0.898 39 H 0.059 0.941 40 H 0.093 0.907 41 H 0.059 0.941 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.218 8.565 -3.564 10.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.110 4.110 3 C 0.113 3.887 4 N -0.149 5.149 5 C -0.484 4.484 6 H 0.132 0.868 7 C -0.164 4.164 8 N -0.455 5.455 9 Si 0.723 3.277 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.209 1.209 13 C 0.263 3.737 14 O -0.498 6.498 15 C -0.052 4.052 16 C -0.192 4.192 17 C -0.204 4.204 18 C -0.044 4.044 19 N -0.254 5.254 20 C -0.125 4.125 21 C -0.013 4.013 22 O -0.309 6.309 23 C -0.012 4.012 24 C -0.110 4.110 25 H 0.211 0.789 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.056 0.944 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.111 0.889 41 H 0.077 0.923 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.920 8.564 -3.465 10.467 hybrid contribution -0.033 -0.742 0.058 0.745 sum 4.888 7.821 -3.407 9.832 Atomic orbital electron populations 1.24019 0.95106 1.03129 1.05236 1.22871 0.94180 0.97934 0.96014 1.17936 0.84788 0.95114 0.90839 1.43546 1.56324 1.06059 1.09016 1.19728 1.22842 1.13590 0.92256 0.86808 1.25311 0.93962 0.99277 0.97898 1.70343 1.06732 1.26704 1.41755 0.86373 0.79875 0.81048 0.80424 1.19093 1.20670 1.20920 1.20243 0.82076 0.82365 0.88984 1.90514 1.59714 1.74769 1.24798 1.20219 0.96819 0.92347 0.95789 1.21981 0.97381 1.03572 0.96255 1.22139 0.94658 1.03377 1.00258 1.21895 1.01217 0.91714 0.89548 1.62085 1.07761 1.11889 1.43635 1.23193 0.89791 1.01606 0.97900 1.22675 0.96635 0.84771 0.97212 1.87938 1.19167 1.29915 1.93913 1.22646 0.81737 0.99621 0.97160 1.22789 1.00112 0.90404 0.97690 0.78900 0.90005 0.90662 0.92248 0.92668 0.88987 0.94116 0.93819 0.90339 0.91939 0.93920 0.91046 0.94444 0.88006 0.92262 0.88886 0.92262 0.88884 0.89678 0.94335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.85 18.60 29.55 0.55 -5.30 16 2 C -0.11 -2.64 10.89 -37.12 -0.40 -3.05 16 3 C 0.24 5.58 5.29 -6.83 -0.04 5.54 16 4 N -0.43 -10.39 2.58 -117.94 -0.30 -10.69 16 5 C -0.36 -8.39 6.20 -14.93 -0.09 -8.48 16 6 H 0.11 2.52 3.66 -52.49 -0.19 2.33 16 7 C 0.04 1.06 4.69 -17.47 -0.08 0.98 16 8 N -0.82 -20.74 9.53 55.50 0.53 -20.21 16 9 Si 0.90 18.50 29.64 -169.99 -5.04 13.46 16 10 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 11 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 12 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 13 C 0.47 11.16 6.43 -10.98 -0.07 11.09 16 14 O -0.61 -15.88 15.57 5.56 0.09 -15.79 16 15 C -0.05 -0.93 0.57 -155.66 -0.09 -1.02 16 16 C -0.13 -2.63 7.71 37.15 0.29 -2.35 16 17 C -0.15 -2.49 6.64 37.16 0.25 -2.24 16 18 C 0.08 1.49 3.56 -3.83 -0.01 1.47 16 19 N -0.53 -7.78 3.33 -234.31 -0.78 -8.56 16 20 C 0.00 0.04 5.15 -3.72 -0.02 0.02 16 21 C 0.06 0.74 7.01 37.21 0.26 1.00 16 22 O -0.39 -5.08 10.83 -35.23 -0.38 -5.47 16 23 C 0.07 0.75 7.01 37.21 0.26 1.01 16 24 C 0.02 0.24 5.52 -3.71 -0.02 0.22 16 25 H 0.19 3.70 7.80 -54.08 -0.42 3.28 16 26 H 0.08 1.88 7.66 -51.93 -0.40 1.48 16 27 H 0.08 1.72 7.34 -51.93 -0.38 1.34 16 28 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 29 H 0.05 0.97 7.06 -51.93 -0.37 0.60 16 30 H 0.09 1.92 4.70 -51.93 -0.24 1.68 16 31 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 32 H 0.04 0.70 7.88 -51.93 -0.41 0.29 16 33 H 0.08 1.43 5.45 -51.93 -0.28 1.14 16 34 H 0.06 0.92 6.12 -51.93 -0.32 0.60 16 35 H 0.04 0.79 7.72 -51.93 -0.40 0.38 16 36 H 0.07 1.37 7.60 -51.93 -0.39 0.98 16 37 H 0.04 0.51 8.11 -51.93 -0.42 0.08 16 38 H 0.10 1.30 4.38 -51.93 -0.23 1.07 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.08 1.08 8.00 -51.93 -0.42 0.67 16 44 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 338.65 15.07 5.10 5.10 Total: -1.00 -28.64 338.65 -6.55 -35.20 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -6.54 Total: 8.06 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 0.78 Total: -1.10 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: -0.56 Total: -39.46 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.29 Total: -21.26 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.04 Total: 13.46 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.64 -6.55 -35.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822681265.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.924 kcal (2) G-P(sol) polarization free energy of solvation -28.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds