Wall clock time and date at job start Tue Mar 31 2020 02:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46921 * 128.50846 * 3 2 1 5 5 C 1.37092 * 120.00059 * 271.87502 * 4 3 2 6 6 H 1.07999 * 120.00200 * 205.93823 * 5 4 3 7 7 C 1.38952 * 119.99770 * 25.93942 * 5 4 3 8 8 N 1.31410 * 119.99952 * 30.00896 * 7 5 4 9 9 Si 1.86801 * 119.99785 * 210.00419 * 7 5 4 10 10 H 1.48500 * 109.47357 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46815 * 120.00209 * 9 7 5 12 12 H 1.48497 * 109.47452 * 239.99754 * 9 7 5 13 13 C 1.34784 * 119.99794 * 91.87902 * 4 3 2 14 14 O 1.21283 * 120.00108 * 2.12702 * 13 4 3 15 15 C 1.50704 * 119.99672 * 182.12821 * 13 4 3 16 16 C 1.52991 * 109.47214 * 49.61725 * 15 13 4 17 17 C 1.53005 * 109.47104 * 289.61875 * 15 13 4 18 18 C 1.52994 * 109.47085 * 169.62072 * 15 13 4 19 19 N 1.46902 * 109.47180 * 186.44728 * 18 15 13 20 20 C 1.47011 * 111.00022 * 272.34766 * 19 18 15 21 21 C 1.53094 * 109.25513 * 177.60687 * 20 19 18 22 22 O 1.43020 * 109.26013 * 56.85231 * 21 20 19 23 23 C 1.43016 * 113.73587 * 301.32405 * 22 21 20 24 24 C 1.47016 * 110.99938 * 148.71408 * 19 18 15 25 25 H 4.40639 * 5.51437 * 180.02562 * 4 1 2 26 26 H 1.08997 * 109.47592 * 8.50636 * 3 2 1 27 27 H 1.09003 * 109.47122 * 248.50776 * 3 2 1 28 28 H 0.97006 * 119.99835 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.47285 * 168.45278 * 16 15 13 30 30 H 1.09005 * 109.47558 * 288.45517 * 16 15 13 31 31 H 1.09005 * 109.47143 * 48.45303 * 16 15 13 32 32 H 1.08998 * 109.47224 * 288.28698 * 17 15 13 33 33 H 1.09005 * 109.47237 * 48.28209 * 17 15 13 34 34 H 1.08992 * 109.47322 * 168.28419 * 17 15 13 35 35 H 1.09001 * 109.47116 * 66.44578 * 18 15 13 36 36 H 1.09001 * 109.47154 * 306.44646 * 18 15 13 37 37 H 1.08993 * 109.50681 * 297.54324 * 20 19 18 38 38 H 1.09004 * 109.50580 * 57.67133 * 20 19 18 39 39 H 1.08998 * 109.51274 * 296.91151 * 21 20 19 40 40 H 1.09005 * 109.54112 * 176.80930 * 21 20 19 41 41 H 1.08999 * 109.50902 * 298.73723 * 23 22 21 42 42 H 1.08996 * 109.53892 * 178.62156 * 23 22 21 43 43 H 1.09004 * 109.50274 * 302.32893 * 24 19 18 44 44 H 1.08996 * 109.50520 * 62.41377 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8609 -1.0808 5 6 3.3260 0.3429 -2.3355 6 1 4.0426 0.7974 -3.0035 7 6 2.5986 -0.7670 -2.7477 8 7 1.3907 -0.9741 -2.2735 9 14 3.3379 -1.9646 -3.9760 10 1 4.7002 -1.5092 -4.3530 11 1 3.4197 -3.3147 -3.3631 12 1 2.4817 -2.0223 -5.1880 13 6 3.3940 2.1615 -0.8416 14 8 3.2611 2.6108 0.2771 15 6 3.8500 3.0576 -1.9643 16 6 2.9134 2.8908 -3.1624 17 6 5.2744 2.6776 -2.3737 18 6 3.8253 4.5140 -1.4964 19 7 4.1199 5.3982 -2.6320 20 6 5.5685 5.5995 -2.7810 21 6 5.8329 6.4757 -4.0082 22 8 5.1264 7.7111 -3.8668 23 6 3.7127 7.5523 -3.7201 24 6 3.4268 6.6869 -2.4899 25 1 -1.0501 0.0000 0.0003 26 1 3.0099 -1.0155 -0.1520 27 1 3.0092 0.3773 0.9562 28 1 0.8828 -1.7487 -2.5616 29 1 3.1127 3.6762 -3.8915 30 1 3.0815 1.9169 -3.6223 31 1 1.8785 2.9604 -2.8271 32 1 5.9715 2.9896 -1.5960 33 1 5.3384 1.5976 -2.5067 34 1 5.5283 3.1746 -3.3098 35 1 4.5755 4.6587 -0.7190 36 1 2.8388 4.7510 -1.0979 37 1 5.9611 6.0914 -1.8911 38 1 6.0587 4.6345 -2.9103 39 1 5.4887 5.9601 -4.9047 40 1 6.9015 6.6748 -4.0906 41 1 3.3068 7.0679 -4.6082 42 1 3.2472 8.5297 -3.5936 43 1 2.3535 6.5157 -2.4068 44 1 3.7846 7.1959 -1.5950 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822681265.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:50 Heat of formation + Delta-G solvation = -6.604204 kcal Electronic energy + Delta-G solvation = -25358.112786 eV Core-core repulsion = 21891.933056 eV Total energy + Delta-G solvation = -3466.179730 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.35816 -40.23863 -37.61692 -36.88658 -34.93138 -33.61276 -32.98124 -32.12522 -29.28040 -28.29090 -27.74938 -26.87930 -25.44601 -24.76947 -22.64894 -21.31377 -20.36725 -19.46187 -18.47898 -17.51406 -17.16918 -17.05606 -16.42054 -16.23482 -16.15268 -15.96030 -15.71479 -15.54762 -14.99981 -14.68499 -14.39239 -14.14484 -13.88928 -13.75995 -13.58193 -13.32190 -13.07506 -12.83012 -12.68362 -12.56320 -12.36000 -12.15785 -12.03871 -11.98125 -11.66057 -11.45490 -11.24659 -11.06897 -10.88838 -10.59698 -10.58925 -10.03935 -9.67067 -9.32143 -8.12047 -5.78641 1.42453 1.54488 1.64354 1.91868 2.22609 2.39069 2.47612 2.71660 3.00526 3.13655 3.36756 3.89065 3.94583 3.99543 4.02244 4.12516 4.19482 4.26008 4.33641 4.39383 4.56345 4.62522 4.71714 4.75027 4.76110 4.77431 4.83082 4.85593 4.91261 4.98578 5.07767 5.13958 5.20553 5.40642 5.44751 5.45371 5.65694 5.76119 5.93283 5.96003 6.05867 6.22750 6.45314 7.20547 7.26642 7.60630 8.03624 8.77615 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.004932 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.551829 B = 5676.283445 C = 6379.879849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.148 4.148 3 C 0.235 3.765 4 N -0.439 5.439 5 C -0.363 4.363 6 H 0.129 0.871 7 C 0.006 3.994 8 N -0.852 5.852 9 Si 0.962 3.038 10 H -0.253 1.253 11 H -0.287 1.287 12 H -0.287 1.287 13 C 0.459 3.541 14 O -0.644 6.644 15 C -0.044 4.044 16 C -0.117 4.117 17 C -0.139 4.139 18 C 0.097 3.903 19 N -0.529 5.529 20 C 0.002 3.998 21 C 0.066 3.934 22 O -0.404 6.404 23 C 0.069 3.931 24 C 0.016 3.984 25 H 0.226 0.774 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.264 0.736 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.009 0.991 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.032 0.968 36 H 0.048 0.952 37 H 0.032 0.968 38 H 0.107 0.893 39 H 0.065 0.935 40 H 0.116 0.884 41 H 0.063 0.937 42 H 0.115 0.885 43 H 0.084 0.916 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.320 9.254 -5.512 12.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.150 4.150 3 C 0.112 3.888 4 N -0.156 5.156 5 C -0.489 4.489 6 H 0.146 0.854 7 C -0.200 4.200 8 N -0.486 5.486 9 Si 0.787 3.213 10 H -0.176 1.176 11 H -0.213 1.213 12 H -0.214 1.214 13 C 0.249 3.751 14 O -0.533 6.533 15 C -0.048 4.048 16 C -0.175 4.175 17 C -0.195 4.195 18 C -0.031 4.031 19 N -0.254 5.254 20 C -0.126 4.126 21 C -0.011 4.011 22 O -0.322 6.322 23 C -0.007 4.007 24 C -0.112 4.112 25 H 0.243 0.757 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.050 0.950 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.125 0.875 39 H 0.083 0.917 40 H 0.134 0.866 41 H 0.082 0.918 42 H 0.133 0.867 43 H 0.103 0.897 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 6.040 9.259 -5.429 12.316 hybrid contribution -0.438 -0.927 0.716 1.250 sum 5.601 8.333 -4.713 11.091 Atomic orbital electron populations 1.24850 0.96101 1.01717 1.03851 1.23286 0.95021 0.99311 0.97364 1.17922 0.84916 0.95104 0.90887 1.43784 1.55992 1.06432 1.09366 1.20095 1.22878 1.13736 0.92202 0.85421 1.26041 0.94022 1.00346 0.99625 1.70455 1.07839 1.26981 1.43371 0.85362 0.79553 0.78457 0.77927 1.17584 1.21286 1.21354 1.21063 0.81695 0.82602 0.89704 1.90477 1.61103 1.75328 1.26430 1.20221 0.98157 0.92385 0.94036 1.21809 0.95500 1.03654 0.96505 1.22076 0.92856 1.02815 1.01790 1.21623 0.99656 0.91517 0.90312 1.62074 1.09233 1.12450 1.41653 1.23273 0.88409 1.02260 0.98641 1.22792 0.97946 0.84061 0.96299 1.87932 1.19777 1.30695 1.93841 1.22723 0.81404 1.00431 0.96191 1.22874 0.99948 0.89792 0.98602 0.75742 0.90048 0.90941 0.92543 0.90346 0.90127 0.97198 0.93159 0.91489 0.89162 0.94976 0.93343 0.94998 0.87523 0.91677 0.86576 0.91826 0.86705 0.89736 0.94834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -11.27 18.60 74.32 1.38 -9.89 16 2 C -0.15 -7.37 10.89 31.12 0.34 -7.03 16 3 C 0.23 11.40 5.29 84.57 0.45 11.84 16 4 N -0.44 -21.43 2.58 -645.43 -1.66 -23.10 16 5 C -0.36 -16.92 6.20 84.04 0.52 -16.40 16 6 H 0.13 5.51 3.66 -2.91 -0.01 5.50 16 7 C 0.01 0.27 4.69 84.93 0.40 0.67 16 8 N -0.85 -43.16 9.53 21.66 0.21 -42.95 16 9 Si 0.96 37.44 29.64 68.60 2.03 39.47 16 10 H -0.25 -9.17 7.11 99.48 0.71 -8.47 16 11 H -0.29 -11.37 7.11 99.48 0.71 -10.66 16 12 H -0.29 -11.32 7.11 99.48 0.71 -10.61 16 13 C 0.46 21.98 6.43 87.66 0.56 22.55 16 14 O -0.64 -34.49 15.57 -3.04 -0.05 -34.53 16 15 C -0.04 -1.70 0.57 -52.93 -0.03 -1.73 16 16 C -0.12 -4.51 7.71 71.98 0.55 -3.96 16 17 C -0.14 -4.43 6.64 71.98 0.48 -3.95 16 18 C 0.10 3.44 3.56 86.30 0.31 3.75 16 19 N -0.53 -14.77 3.33 -895.23 -2.98 -17.75 16 20 C 0.00 0.04 5.15 86.31 0.44 0.49 16 21 C 0.07 1.31 7.01 72.01 0.50 1.81 16 22 O -0.40 -9.36 10.83 -148.98 -1.61 -10.97 16 23 C 0.07 1.42 7.01 72.02 0.50 1.93 16 24 C 0.02 0.40 5.52 86.31 0.48 0.87 16 25 H 0.23 8.32 7.80 -4.41 -0.03 8.29 16 26 H 0.08 3.85 7.66 -2.39 -0.02 3.83 16 27 H 0.07 3.46 7.34 -2.39 -0.02 3.45 16 28 H 0.26 12.93 8.31 -92.70 -0.77 12.16 16 29 H 0.08 2.61 7.06 -2.39 -0.02 2.59 16 30 H 0.08 3.29 4.70 -2.38 -0.01 3.27 16 31 H 0.01 0.39 8.09 -2.38 -0.02 0.37 16 32 H 0.05 1.54 7.88 -2.39 -0.02 1.52 16 33 H 0.07 2.32 5.45 -2.38 -0.01 2.31 16 34 H 0.09 2.38 6.12 -2.39 -0.01 2.36 16 35 H 0.03 1.19 7.72 -2.39 -0.02 1.17 16 36 H 0.05 1.91 7.60 -2.39 -0.02 1.89 16 37 H 0.03 0.80 8.11 -2.39 -0.02 0.78 16 38 H 0.11 2.40 4.38 -2.38 -0.01 2.39 16 39 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 40 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 41 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.08 2.08 8.00 -2.38 -0.02 2.06 16 44 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -61.59 338.65 3.82 -57.77 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 0.99 Total: 31.12 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 6.89 Total: 0.95 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -4.44 Total: -83.80 kcal Atomic # 8 Polarization: -43.85 SS G_CDS: -1.66 Total: -45.51 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.47 kcal Total: -61.59 3.82 -57.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822681265.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.168 kcal (2) G-P(sol) polarization free energy of solvation -61.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds