Wall clock time and date at job start Tue Mar 31 2020 02:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.33809 * 122.73884 * 2 1 4 4 O 1.21225 * 125.31116 * 0.04683 * 3 2 1 5 5 C 1.51220 * 109.37813 * 180.02562 * 3 2 1 6 6 H 1.08998 * 113.20925 * 122.41873 * 5 3 2 7 7 C 1.54290 * 109.20829 * 248.77738 * 5 3 2 8 8 N 1.48518 * 104.71287 * 134.18317 * 7 5 3 9 9 C 1.46904 * 111.00004 * 200.73228 * 8 7 5 10 10 C 1.53002 * 109.47013 * 176.15574 * 9 8 7 11 11 C 1.52993 * 109.47112 * 285.70018 * 10 9 8 12 12 C 1.53004 * 109.46947 * 45.69937 * 10 9 8 13 13 C 1.53004 * 109.47086 * 165.69534 * 10 9 8 14 14 C 1.50699 * 109.47021 * 179.97438 * 13 10 9 15 15 H 1.07998 * 120.00111 * 0.02562 * 14 13 10 16 16 C 1.37877 * 119.99745 * 180.02562 * 14 13 10 17 17 N 1.31508 * 120.00301 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99956 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47128 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47478 * 119.99891 * 18 16 14 21 21 H 1.48505 * 109.47116 * 240.00145 * 18 16 14 22 22 C 1.48514 * 104.20618 * 320.27604 * 8 7 5 23 23 C 1.54295 * 104.71159 * 39.72507 * 22 8 7 24 24 H 1.08995 * 112.64373 * 99.12505 * 23 22 8 25 25 C 1.33812 * 122.73885 * 180.02562 * 2 1 3 26 26 O 1.21228 * 125.30780 * 0.02764 * 25 2 1 27 27 H 1.09002 * 109.46995 * 269.99866 * 1 2 3 28 28 H 1.09001 * 109.47209 * 29.99668 * 1 2 3 29 29 H 1.08997 * 109.47228 * 150.00100 * 1 2 3 30 30 H 1.08999 * 110.39085 * 15.37706 * 7 5 3 31 31 H 1.08996 * 110.39457 * 252.99374 * 7 5 3 32 32 H 1.08999 * 109.46930 * 56.15503 * 9 8 7 33 33 H 1.08999 * 109.47014 * 296.15502 * 9 8 7 34 34 H 1.08992 * 109.47691 * 85.17996 * 11 10 9 35 35 H 1.09007 * 109.47105 * 205.18445 * 11 10 9 36 36 H 1.09002 * 109.46819 * 325.17582 * 11 10 9 37 37 H 1.09000 * 109.47259 * 59.99722 * 12 10 9 38 38 H 1.08998 * 109.46924 * 180.02562 * 12 10 9 39 39 H 1.09001 * 109.47075 * 299.99489 * 12 10 9 40 40 H 1.09000 * 109.47174 * 300.00311 * 13 10 9 41 41 H 1.08998 * 109.46603 * 59.99857 * 13 10 9 42 42 H 0.96998 * 120.00659 * 180.02562 * 17 16 14 43 43 H 1.08995 * 110.39108 * 158.52964 * 22 8 7 44 44 H 1.09004 * 110.39094 * 280.92030 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1886 1.1255 0.0000 4 8 1.7355 2.2499 0.0008 5 6 3.6599 0.7761 -0.0006 6 1 4.2016 1.1995 -0.8464 7 6 4.2762 1.1716 1.3574 8 7 5.0972 -0.0005 1.7547 9 6 5.3487 -0.0008 3.2021 10 6 6.1132 -1.2691 3.5866 11 6 5.1632 -2.4679 3.5503 12 6 7.2573 -1.4949 2.5962 13 6 6.6836 -1.1128 4.9977 14 6 7.4360 -2.3623 5.3766 15 1 7.5013 -3.1854 4.6805 16 6 8.0411 -2.4546 6.6121 17 7 7.9621 -1.4521 7.4596 18 14 8.9745 -4.0030 7.0816 19 1 8.9156 -4.9755 5.9608 20 1 10.3910 -3.6602 7.3662 21 1 8.3582 -4.6049 8.2913 22 6 4.2762 -1.1723 1.3570 23 6 3.6599 -0.7762 -0.0010 24 1 4.2016 -1.1992 -0.8470 25 6 2.1886 -1.1256 -0.0005 26 8 1.7354 -2.2499 -0.0015 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 3.4917 1.3523 2.0923 31 1 4.9045 2.0553 1.2465 32 1 4.3987 0.0268 3.7358 33 1 5.9406 0.8749 3.4682 34 1 5.1081 -2.8572 2.5338 35 1 5.5342 -3.2458 4.2178 36 1 4.1706 -2.1547 3.8739 37 1 7.9341 -0.6409 2.6219 38 1 7.8017 -2.3987 2.8698 39 1 6.8510 -1.6064 1.5909 40 1 7.3603 -0.2587 5.0235 41 1 5.8685 -0.9518 5.7032 42 1 8.3881 -1.5168 8.3286 43 1 4.9044 -2.0560 1.2455 44 1 3.4915 -1.3533 2.0917 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877719738.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:53 Heat of formation + Delta-G solvation = -50.894348 kcal Electronic energy + Delta-G solvation = -24841.872753 eV Core-core repulsion = 21373.772458 eV Total energy + Delta-G solvation = -3468.100295 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.57013 -39.02150 -38.89710 -36.41186 -35.71646 -32.84528 -31.74625 -29.72692 -28.09813 -26.96273 -26.45064 -25.62443 -24.62713 -22.92584 -21.46108 -21.21852 -19.95054 -17.99630 -17.75978 -16.88450 -16.60468 -16.20748 -15.89739 -15.37931 -15.09086 -14.59376 -14.34959 -14.20917 -13.81026 -13.66877 -13.32420 -13.03140 -12.96061 -12.83555 -12.61970 -12.18193 -11.86799 -11.73246 -11.60638 -11.30452 -11.02807 -10.87482 -10.83601 -10.71437 -10.44897 -10.34498 -10.13822 -10.12256 -9.99208 -9.72347 -9.06169 -8.86860 -8.45208 -8.34166 -5.98648 -3.98796 1.17535 2.16514 2.37260 3.31396 3.39605 3.42715 3.60132 3.74273 3.94553 4.18646 4.32805 4.47786 4.79430 4.83254 4.94106 4.96662 5.02877 5.11875 5.28272 5.37282 5.41206 5.44529 5.56166 5.64162 5.69691 5.70719 5.99589 6.12491 6.22209 6.43481 6.44014 6.54963 6.63751 6.78724 6.83609 6.96765 7.03268 7.19694 7.26517 7.31722 7.43761 7.67413 7.81369 8.01014 8.44785 9.06632 9.64221 11.12986 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029473 B = 0.003549 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.800589 B = 7887.205038 C = 8223.151550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.578 5.578 3 C 0.533 3.467 4 O -0.479 6.479 5 C -0.123 4.123 6 H 0.140 0.860 7 C 0.046 3.954 8 N -0.494 5.494 9 C 0.054 3.946 10 C -0.058 4.058 11 C -0.147 4.147 12 C -0.115 4.115 13 C 0.035 3.965 14 C -0.507 4.507 15 H 0.060 0.940 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.887 3.113 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.286 1.286 22 C 0.043 3.957 23 C -0.128 4.128 24 H 0.140 0.860 25 C 0.532 3.468 26 O -0.474 6.474 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.048 0.952 31 H 0.100 0.900 32 H 0.031 0.969 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.034 0.966 37 H 0.043 0.957 38 H 0.054 0.946 39 H 0.043 0.957 40 H 0.016 0.984 41 H 0.012 0.988 42 H 0.258 0.742 43 H 0.114 0.886 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.130 4.097 -16.809 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.321 5.321 3 C 0.321 3.679 4 O -0.350 6.350 5 C -0.144 4.144 6 H 0.158 0.842 7 C -0.082 4.082 8 N -0.217 5.217 9 C -0.074 4.074 10 C -0.059 4.059 11 C -0.204 4.204 12 C -0.172 4.172 13 C -0.002 4.002 14 C -0.546 4.546 15 H 0.079 0.921 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.715 3.285 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.212 1.212 22 C -0.085 4.085 23 C -0.149 4.149 24 H 0.158 0.842 25 C 0.320 3.680 26 O -0.345 6.345 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.118 0.882 32 H 0.050 0.950 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.035 0.965 41 H 0.031 0.969 42 H 0.068 0.932 43 H 0.132 0.868 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.091 4.149 -16.863 20.605 hybrid contribution -0.476 -0.708 0.933 1.264 sum -11.567 3.441 -15.930 19.985 Atomic orbital electron populations 1.21949 0.77068 1.04634 1.03832 1.46636 1.09734 1.09421 1.66318 1.20785 0.89898 0.83709 0.73496 1.90766 1.77716 1.21261 1.45238 1.22919 0.92636 0.95863 1.03024 0.84184 1.22984 0.96406 0.96667 0.92187 1.65613 1.38377 0.99978 1.17763 1.22599 0.99116 1.01076 0.84574 1.20642 0.94708 0.91459 0.99064 1.22320 0.97761 0.99645 1.00671 1.21630 0.97401 1.01424 0.96764 1.19127 0.95442 0.97270 0.88411 1.21253 1.32175 1.01277 0.99853 0.92144 1.25009 0.96661 0.96129 0.96744 1.69967 1.44862 1.30972 1.07857 0.86615 0.79735 0.83690 0.78439 1.19729 1.21135 1.21209 1.23489 0.96535 0.97004 0.91445 1.23045 0.92723 0.95504 1.03674 0.84206 1.20806 0.89880 0.83717 0.73568 1.90778 1.77640 1.21206 1.44864 0.90908 0.89427 0.89372 0.93420 0.88164 0.95040 0.90287 0.93640 0.90758 0.94715 0.93806 0.92651 0.93817 0.96527 0.96932 0.93185 0.86774 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.54 10.58 59.85 0.63 1.17 16 2 N -0.58 -5.91 2.95 -122.84 -0.36 -6.27 16 3 C 0.53 5.68 7.07 -11.16 -0.08 5.60 16 4 O -0.48 -6.30 17.47 5.60 0.10 -6.20 16 5 C -0.12 -1.10 4.17 -89.66 -0.37 -1.47 16 6 H 0.14 0.93 8.14 -51.93 -0.42 0.51 16 7 C 0.05 0.50 6.04 -2.25 -0.01 0.48 16 8 N -0.49 -6.33 4.34 -230.16 -1.00 -7.33 16 9 C 0.05 0.85 4.20 -3.82 -0.02 0.84 16 10 C -0.06 -1.09 0.53 -154.51 -0.08 -1.17 16 11 C -0.15 -2.62 7.22 37.15 0.27 -2.35 16 12 C -0.11 -2.05 7.70 37.16 0.29 -1.77 16 13 C 0.03 0.85 3.99 -27.88 -0.11 0.74 16 14 C -0.51 -13.48 7.29 -34.44 -0.25 -13.74 16 15 H 0.06 1.57 5.95 -52.49 -0.31 1.25 16 16 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.39 13.29 55.43 0.74 -25.66 16 18 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 C 0.04 0.52 3.84 -2.25 -0.01 0.51 16 23 C -0.13 -1.21 4.17 -89.66 -0.37 -1.58 16 24 H 0.14 1.02 8.14 -51.93 -0.42 0.60 16 25 C 0.53 5.91 7.07 -11.16 -0.08 5.83 16 26 O -0.47 -6.57 17.47 5.60 0.10 -6.47 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.63 7.82 -51.93 -0.41 0.23 16 29 H 0.09 0.65 7.82 -51.93 -0.41 0.25 16 30 H 0.05 0.56 7.50 -51.93 -0.39 0.17 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.03 0.51 7.60 -51.93 -0.39 0.11 16 33 H 0.08 1.30 8.06 -51.93 -0.42 0.88 16 34 H 0.04 0.70 4.99 -51.93 -0.26 0.44 16 35 H 0.07 1.51 6.24 -51.92 -0.32 1.18 16 36 H 0.03 0.59 6.97 -51.93 -0.36 0.23 16 37 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 1.08 6.62 -51.93 -0.34 0.74 16 39 H 0.04 0.67 6.00 -51.93 -0.31 0.36 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.11 1.42 4.70 -51.93 -0.24 1.17 16 44 H 0.05 0.71 6.39 -51.93 -0.33 0.38 16 LS Contribution 337.64 15.07 5.09 5.09 Total: -1.00 -31.30 337.64 -7.26 -38.56 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -6.60 Total: -2.48 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -0.30 Total: -5.47 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: -0.62 Total: -39.26 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.20 Total: -12.67 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.30 -7.26 -38.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877719738.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.336 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds