Wall clock time and date at job start Tue Mar 31 2020 02:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.33809 * 122.73884 * 2 1 4 4 O 1.21225 * 125.31116 * 0.04683 * 3 2 1 5 5 C 1.51220 * 109.37813 * 180.02562 * 3 2 1 6 6 H 1.08998 * 113.20925 * 122.41873 * 5 3 2 7 7 C 1.54290 * 109.20829 * 248.77738 * 5 3 2 8 8 N 1.48518 * 104.71287 * 134.18317 * 7 5 3 9 9 C 1.46904 * 111.00004 * 200.73228 * 8 7 5 10 10 C 1.53002 * 109.47013 * 176.15574 * 9 8 7 11 11 C 1.52993 * 109.47112 * 285.70018 * 10 9 8 12 12 C 1.53004 * 109.46947 * 45.69937 * 10 9 8 13 13 C 1.53004 * 109.47086 * 165.69534 * 10 9 8 14 14 C 1.50699 * 109.47021 * 179.97438 * 13 10 9 15 15 H 1.07998 * 120.00111 * 0.02562 * 14 13 10 16 16 C 1.37877 * 119.99745 * 180.02562 * 14 13 10 17 17 N 1.31508 * 120.00301 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99956 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47128 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47478 * 119.99891 * 18 16 14 21 21 H 1.48505 * 109.47116 * 240.00145 * 18 16 14 22 22 C 1.48514 * 104.20618 * 320.27604 * 8 7 5 23 23 C 1.54295 * 104.71159 * 39.72507 * 22 8 7 24 24 H 1.08995 * 112.64373 * 99.12505 * 23 22 8 25 25 C 1.33812 * 122.73885 * 180.02562 * 2 1 3 26 26 O 1.21228 * 125.30780 * 0.02764 * 25 2 1 27 27 H 1.09002 * 109.46995 * 269.99866 * 1 2 3 28 28 H 1.09001 * 109.47209 * 29.99668 * 1 2 3 29 29 H 1.08997 * 109.47228 * 150.00100 * 1 2 3 30 30 H 1.08999 * 110.39085 * 15.37706 * 7 5 3 31 31 H 1.08996 * 110.39457 * 252.99374 * 7 5 3 32 32 H 1.08999 * 109.46930 * 56.15503 * 9 8 7 33 33 H 1.08999 * 109.47014 * 296.15502 * 9 8 7 34 34 H 1.08992 * 109.47691 * 85.17996 * 11 10 9 35 35 H 1.09007 * 109.47105 * 205.18445 * 11 10 9 36 36 H 1.09002 * 109.46819 * 325.17582 * 11 10 9 37 37 H 1.09000 * 109.47259 * 59.99722 * 12 10 9 38 38 H 1.08998 * 109.46924 * 180.02562 * 12 10 9 39 39 H 1.09001 * 109.47075 * 299.99489 * 12 10 9 40 40 H 1.09000 * 109.47174 * 300.00311 * 13 10 9 41 41 H 1.08998 * 109.46603 * 59.99857 * 13 10 9 42 42 H 0.96998 * 120.00659 * 180.02562 * 17 16 14 43 43 H 1.08995 * 110.39108 * 158.52964 * 22 8 7 44 44 H 1.09004 * 110.39094 * 280.92030 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1886 1.1255 0.0000 4 8 1.7355 2.2499 0.0008 5 6 3.6599 0.7761 -0.0006 6 1 4.2016 1.1995 -0.8464 7 6 4.2762 1.1716 1.3574 8 7 5.0972 -0.0005 1.7547 9 6 5.3487 -0.0008 3.2021 10 6 6.1132 -1.2691 3.5866 11 6 5.1632 -2.4679 3.5503 12 6 7.2573 -1.4949 2.5962 13 6 6.6836 -1.1128 4.9977 14 6 7.4360 -2.3623 5.3766 15 1 7.5013 -3.1854 4.6805 16 6 8.0411 -2.4546 6.6121 17 7 7.9621 -1.4521 7.4596 18 14 8.9745 -4.0030 7.0816 19 1 8.9156 -4.9755 5.9608 20 1 10.3910 -3.6602 7.3662 21 1 8.3582 -4.6049 8.2913 22 6 4.2762 -1.1723 1.3570 23 6 3.6599 -0.7762 -0.0010 24 1 4.2016 -1.1992 -0.8470 25 6 2.1886 -1.1256 -0.0005 26 8 1.7354 -2.2499 -0.0015 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 3.4917 1.3523 2.0923 31 1 4.9045 2.0553 1.2465 32 1 4.3987 0.0268 3.7358 33 1 5.9406 0.8749 3.4682 34 1 5.1081 -2.8572 2.5338 35 1 5.5342 -3.2458 4.2178 36 1 4.1706 -2.1547 3.8739 37 1 7.9341 -0.6409 2.6219 38 1 7.8017 -2.3987 2.8698 39 1 6.8510 -1.6064 1.5909 40 1 7.3603 -0.2587 5.0235 41 1 5.8685 -0.9518 5.7032 42 1 8.3881 -1.5168 8.3286 43 1 4.9044 -2.0560 1.2455 44 1 3.4915 -1.3533 2.0917 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877719738.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:52 Heat of formation + Delta-G solvation = -71.713016 kcal Electronic energy + Delta-G solvation = -24842.775518 eV Core-core repulsion = 21373.772458 eV Total energy + Delta-G solvation = -3469.003060 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.42109 -40.17879 -39.82337 -37.65781 -36.72802 -34.61869 -33.02650 -30.70478 -29.18852 -28.62554 -27.89236 -26.83798 -25.53379 -24.71588 -22.33847 -22.26985 -20.83369 -19.50348 -18.60028 -18.28554 -17.73749 -17.46948 -16.95117 -16.51339 -16.27337 -15.99819 -15.46746 -15.29832 -14.99142 -14.80396 -14.52351 -14.24613 -14.18866 -14.03282 -13.80927 -13.56223 -13.10898 -12.89819 -12.76883 -12.71955 -12.57327 -12.34979 -12.30946 -12.11925 -11.86507 -11.78110 -11.64807 -11.33315 -11.11737 -10.95673 -10.80958 -10.67615 -10.49235 -9.54169 -8.12695 -6.18923 0.31295 1.37760 1.41215 1.42891 1.54381 1.54841 2.44945 2.81227 2.83664 3.15852 3.20123 3.21974 3.52529 3.96392 4.12011 4.13131 4.15396 4.20426 4.23255 4.30232 4.35695 4.41615 4.57984 4.65701 4.67962 4.75411 4.82616 4.88237 4.88841 5.00012 5.05981 5.19637 5.30655 5.55218 5.58497 5.60313 5.65122 5.65834 5.77947 5.84541 5.95897 5.99093 6.12926 6.37153 6.60263 6.96508 7.48283 8.99824 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029473 B = 0.003549 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.800589 B = 7887.205038 C = 8223.151550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.580 5.580 3 C 0.535 3.465 4 O -0.505 6.505 5 C -0.109 4.109 6 H 0.175 0.825 7 C 0.044 3.956 8 N -0.488 5.488 9 C 0.065 3.935 10 C -0.054 4.054 11 C -0.140 4.140 12 C -0.106 4.106 13 C 0.041 3.959 14 C -0.511 4.511 15 H 0.067 0.933 16 C -0.004 4.004 17 N -0.938 5.938 18 Si 0.954 3.046 19 H -0.260 1.260 20 H -0.283 1.283 21 H -0.285 1.285 22 C 0.039 3.961 23 C -0.115 4.115 24 H 0.173 0.827 25 C 0.534 3.466 26 O -0.504 6.504 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.035 0.965 31 H 0.114 0.886 32 H 0.024 0.976 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.045 0.955 36 H 0.036 0.964 37 H 0.035 0.965 38 H 0.036 0.964 39 H 0.076 0.924 40 H -0.012 1.012 41 H -0.019 1.019 42 H 0.259 0.741 43 H 0.115 0.885 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.038 3.494 -19.273 22.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.322 5.322 3 C 0.325 3.675 4 O -0.378 6.378 5 C -0.130 4.130 6 H 0.193 0.807 7 C -0.084 4.084 8 N -0.212 5.212 9 C -0.064 4.064 10 C -0.055 4.055 11 C -0.196 4.196 12 C -0.163 4.163 13 C 0.003 3.997 14 C -0.549 4.549 15 H 0.086 0.914 16 C -0.201 4.201 17 N -0.580 5.580 18 Si 0.779 3.221 19 H -0.183 1.183 20 H -0.209 1.209 21 H -0.211 1.211 22 C -0.089 4.089 23 C -0.136 4.136 24 H 0.191 0.809 25 C 0.324 3.676 26 O -0.377 6.377 27 H 0.093 0.907 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.054 0.946 31 H 0.132 0.868 32 H 0.042 0.958 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.095 0.905 40 H 0.006 0.994 41 H -0.001 1.001 42 H 0.068 0.932 43 H 0.133 0.867 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -11.008 3.543 -19.347 22.540 hybrid contribution -0.579 -0.473 1.705 1.861 sum -11.587 3.070 -17.643 21.329 Atomic orbital electron populations 1.22107 0.76178 1.05476 1.04289 1.46735 1.10588 1.09233 1.65652 1.21029 0.90614 0.83256 0.72610 1.90763 1.78291 1.22223 1.46498 1.22975 0.91511 0.95469 1.03024 0.80725 1.23042 0.96165 0.96289 0.92929 1.65559 1.39317 1.01302 1.14996 1.22288 0.98158 0.99052 0.86857 1.20482 0.95608 0.93480 0.95887 1.22242 0.97274 0.98259 1.01857 1.21541 0.96625 1.00088 0.98025 1.19010 0.93764 0.95440 0.91479 1.21645 1.31420 1.01990 0.99826 0.91448 1.25889 0.97924 0.99243 0.97000 1.70106 1.46328 1.33199 1.08343 0.85562 0.78176 0.80038 0.78285 1.18333 1.20867 1.21110 1.23460 0.96126 0.96705 0.92627 1.23072 0.91575 0.95790 1.03194 0.80935 1.21046 0.90625 0.83313 0.72661 1.90771 1.78266 1.22310 1.46322 0.90698 0.88516 0.88654 0.94626 0.86756 0.95801 0.91101 0.90575 0.93545 0.94523 0.94600 0.94485 0.90546 0.99354 1.00108 0.93234 0.86701 0.94391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.90 10.58 127.77 1.35 2.25 16 2 N -0.58 -10.71 2.95 -780.47 -2.30 -13.01 16 3 C 0.54 10.15 7.07 87.97 0.62 10.77 16 4 O -0.50 -12.38 17.47 -2.86 -0.05 -12.43 16 5 C -0.11 -1.56 4.17 -10.17 -0.04 -1.60 16 6 H 0.18 1.40 8.14 -2.39 -0.02 1.38 16 7 C 0.04 0.84 6.04 86.43 0.52 1.36 16 8 N -0.49 -11.38 4.34 -882.10 -3.83 -15.21 16 9 C 0.06 2.03 4.20 86.30 0.36 2.39 16 10 C -0.05 -2.02 0.53 -52.18 -0.03 -2.05 16 11 C -0.14 -4.87 7.22 71.98 0.52 -4.35 16 12 C -0.11 -3.63 7.70 71.98 0.55 -3.07 16 13 C 0.04 2.04 3.99 29.85 0.12 2.16 16 14 C -0.51 -27.63 7.29 25.60 0.19 -27.44 16 15 H 0.07 3.49 5.95 -2.91 -0.02 3.47 16 16 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 17 N -0.94 -56.83 13.29 21.45 0.28 -56.55 16 18 Si 0.95 43.97 29.54 68.60 2.03 46.00 16 19 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 22 C 0.04 0.82 3.84 86.43 0.33 1.16 16 23 C -0.11 -1.76 4.17 -10.17 -0.04 -1.80 16 24 H 0.17 1.61 8.14 -2.39 -0.02 1.59 16 25 C 0.53 10.62 7.07 87.97 0.62 11.24 16 26 O -0.50 -13.09 17.47 -2.87 -0.05 -13.14 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.10 1.26 7.82 -2.39 -0.02 1.24 16 29 H 0.09 1.28 7.82 -2.39 -0.02 1.27 16 30 H 0.04 0.79 7.50 -2.39 -0.02 0.77 16 31 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.02 0.78 7.60 -2.39 -0.02 0.76 16 33 H 0.07 2.34 8.06 -2.39 -0.02 2.32 16 34 H 0.08 2.17 4.99 -2.39 -0.01 2.16 16 35 H 0.05 1.87 6.24 -2.38 -0.01 1.86 16 36 H 0.04 1.23 6.97 -2.39 -0.02 1.22 16 37 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.04 1.39 6.62 -2.39 -0.02 1.37 16 39 H 0.08 2.11 6.00 -2.39 -0.01 2.10 16 40 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 41 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 42 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 43 H 0.12 2.44 4.70 -2.39 -0.01 2.43 16 44 H 0.04 0.95 6.39 -2.39 -0.02 0.93 16 Total: -1.00 -69.38 337.64 2.63 -66.76 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 1.00 Total: 6.32 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: 5.54 Total: -8.74 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -5.84 Total: -84.77 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.10 Total: -25.57 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -69.38 2.63 -66.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877719738.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.957 kcal (2) G-P(sol) polarization free energy of solvation -69.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds