Wall clock time and date at job start Tue Mar 31 2020 03:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99861 * 2 1 4 4 H 1.48501 * 109.47119 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46827 * 300.00718 * 3 2 1 6 6 H 1.48503 * 109.46571 * 60.00310 * 3 2 1 7 7 C 1.38808 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00111 * 197.35526 * 7 2 1 9 9 N 1.36936 * 120.00266 * 17.35915 * 7 2 1 10 10 C 1.46925 * 120.63418 * 207.67138 * 9 7 2 11 11 C 1.53187 * 108.77697 * 233.62717 * 10 9 7 12 12 C 1.53038 * 109.31745 * 305.36350 * 11 10 9 13 13 N 1.46501 * 109.46425 * 181.38211 * 12 11 10 14 14 C 1.34770 * 119.99846 * 154.97242 * 13 12 11 15 15 O 1.21593 * 120.00431 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00306 * 180.02562 * 14 13 12 17 17 C 1.47867 * 126.92034 * 0.03882 * 16 14 13 18 18 C 1.56019 * 105.11164 * 181.90582 * 17 16 14 19 19 H 1.09002 * 116.26098 * 158.85077 * 18 17 16 20 20 C 1.57089 * 99.60014 * 32.80314 * 18 17 16 21 21 C 1.49276 * 126.93498 * 180.02562 * 16 14 13 22 22 H 1.09004 * 116.11832 * 16.88013 * 21 16 14 23 23 C 1.56015 * 104.12669 * 247.77970 * 21 16 14 24 24 N 1.49707 * 104.08344 * 288.80426 * 18 17 16 25 25 C 1.53051 * 109.52367 * 61.37027 * 12 11 10 26 26 C 1.46928 * 120.63144 * 27.69271 * 9 7 2 27 27 H 0.96996 * 120.00203 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.58753 * 113.84175 * 10 9 7 29 29 H 1.08998 * 109.58435 * 353.41628 * 10 9 7 30 30 H 1.09004 * 109.49709 * 185.41247 * 11 10 9 31 31 H 1.09003 * 109.49724 * 65.31615 * 11 10 9 32 32 H 1.08994 * 109.46170 * 301.36068 * 12 11 10 33 33 H 0.96993 * 119.99731 * 334.97755 * 13 12 11 34 34 H 1.09005 * 110.31749 * 300.80861 * 17 16 14 35 35 H 1.08992 * 110.31475 * 62.99475 * 17 16 14 36 36 H 1.08996 * 113.07786 * 191.53717 * 20 18 17 37 37 H 1.08995 * 111.62930 * 64.13516 * 20 18 17 38 38 H 1.08994 * 110.32285 * 46.84490 * 23 21 16 39 39 H 1.09002 * 110.32310 * 169.05347 * 23 21 16 40 40 H 1.00901 * 110.99972 * 306.12260 * 24 18 17 41 41 H 1.09000 * 109.49557 * 58.58622 * 25 12 11 42 42 H 1.08999 * 109.49585 * 178.67740 * 25 12 11 43 43 H 1.08997 * 109.58951 * 246.16322 * 26 9 7 44 44 H 1.09006 * 109.58611 * 6.58307 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0535 -1.2235 0.2785 9 7 1.3725 -2.3609 -0.3549 10 6 1.8196 -3.6548 0.1785 11 6 2.0753 -4.6090 -0.9923 12 6 0.8199 -4.6886 -1.8640 13 7 1.0496 -5.6257 -2.9663 14 6 0.0063 -6.2460 -3.5519 15 8 -1.1258 -6.0275 -3.1656 16 7 0.2175 -7.1085 -4.5658 17 6 1.5206 -7.4862 -5.1537 18 6 1.1735 -8.4686 -6.3150 19 1 1.9312 -8.5865 -7.0897 20 6 -0.2039 -7.8636 -6.7671 21 6 -0.8166 -7.8754 -5.3212 22 1 -1.8427 -7.5203 -5.2253 23 6 -0.5606 -9.3603 -4.9167 24 7 0.7230 -9.7137 -5.6163 25 6 0.5020 -3.3028 -2.4307 26 6 0.2282 -2.3340 -1.2761 27 1 -0.4850 0.8400 0.0004 28 1 1.0472 -4.0698 0.8260 29 1 2.7402 -3.5177 0.7459 30 1 2.3148 -5.6005 -0.6080 31 1 2.9092 -4.2382 -1.5884 32 1 -0.0193 -5.0356 -1.2612 33 1 1.9526 -5.7997 -3.2747 34 1 2.0297 -6.6046 -5.5435 35 1 2.1415 -7.9845 -4.4093 36 1 -0.7496 -8.5102 -7.4542 37 1 -0.0893 -6.8535 -7.1604 38 1 -0.4430 -9.4435 -3.8363 39 1 -1.3799 -9.9926 -5.2590 40 1 1.4157 -10.0269 -4.9530 41 1 1.3508 -2.9445 -3.0131 42 1 -0.3785 -3.3646 -3.0702 43 1 -0.6740 -2.6411 -0.7472 44 1 0.0986 -1.3253 -1.6685 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891523739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:25 Heat of formation + Delta-G solvation = 6.499184 kcal Electronic energy + Delta-G solvation = -24499.624751 eV Core-core repulsion = 21066.305978 eV Total energy + Delta-G solvation = -3433.318773 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.98618 -40.33498 -38.83295 -36.03035 -34.54106 -33.60062 -31.78376 -31.27777 -30.74807 -30.01403 -26.99594 -25.87005 -23.96851 -23.88273 -22.33808 -21.67872 -21.17373 -20.33830 -19.34497 -18.67725 -17.78791 -17.04688 -16.87048 -16.76178 -16.19167 -15.60632 -15.38816 -15.17586 -14.91308 -14.71480 -14.31318 -14.29831 -13.91474 -13.67530 -13.21704 -13.19733 -13.06515 -12.94597 -12.69561 -12.60961 -12.53762 -12.30887 -12.15214 -12.14357 -12.03974 -11.89611 -11.58149 -11.49918 -11.26423 -10.61171 -10.22896 -9.83122 -9.26001 -8.74615 -7.88908 -5.35267 1.43787 1.47191 1.48029 1.59066 2.06943 2.50542 2.87084 3.04644 3.27265 3.39033 3.53825 3.63592 3.78748 3.83488 3.98086 4.04592 4.26131 4.29147 4.42472 4.43423 4.50333 4.62976 4.68048 4.75400 4.79527 4.84527 4.88002 4.96960 4.98344 5.03040 5.06697 5.08131 5.18328 5.27707 5.42111 5.52449 5.54805 5.61964 5.66712 6.02416 6.29737 6.36605 6.93785 7.11164 7.51325 7.81925 8.35022 9.18479 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.035564 B = 0.003161 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.133027 B = 8856.821034 C = 8919.917644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.055 4.055 3 Si 0.970 3.030 4 H -0.261 1.261 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.261 4.261 8 H 0.075 0.925 9 N -0.610 5.610 10 C 0.142 3.858 11 C -0.119 4.119 12 C 0.181 3.819 13 N -0.723 5.723 14 C 0.715 3.285 15 O -0.639 6.639 16 N -0.643 5.643 17 C 0.061 3.939 18 C 0.072 3.928 19 H 0.166 0.834 20 C -0.126 4.126 21 C 0.112 3.888 22 H 0.105 0.895 23 C 0.037 3.963 24 N -0.668 5.668 25 C -0.128 4.128 26 C 0.184 3.816 27 H 0.249 0.751 28 H 0.011 0.989 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.407 0.593 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.098 0.902 40 H 0.344 0.656 41 H 0.060 0.940 42 H 0.040 0.960 43 H -0.012 1.012 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.524 -20.241 -14.777 25.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.250 4.250 3 Si 0.798 3.202 4 H -0.185 1.185 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.391 4.391 8 H 0.093 0.907 9 N -0.333 5.333 10 C 0.016 3.984 11 C -0.159 4.159 12 C 0.075 3.925 13 N -0.377 5.377 14 C 0.417 3.583 15 O -0.520 6.520 16 N -0.381 5.381 17 C -0.062 4.062 18 C -0.037 4.037 19 H 0.183 0.817 20 C -0.164 4.164 21 C 0.008 3.992 22 H 0.124 0.876 23 C -0.093 4.093 24 N -0.298 5.298 25 C -0.169 4.169 26 C 0.057 3.943 27 H 0.058 0.942 28 H 0.029 0.971 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.243 0.757 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.127 0.873 37 H 0.100 0.900 38 H 0.064 0.936 39 H 0.116 0.884 40 H 0.161 0.839 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.006 0.994 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.347 -20.256 -14.956 25.740 hybrid contribution 0.324 1.859 1.149 2.209 sum 5.671 -18.397 -13.807 23.691 Atomic orbital electron populations 1.70223 1.06967 1.25828 1.55484 1.25892 0.96003 1.01877 1.01273 0.85163 0.78812 0.79574 0.76619 1.18501 1.21908 1.22056 1.19619 0.93216 0.85805 1.40508 0.90694 1.44369 1.35632 1.02600 1.50706 1.21039 0.97951 0.85518 0.93889 1.22127 0.96040 1.00406 0.97289 1.20529 0.98425 0.87098 0.86421 1.45114 1.08491 1.46483 1.37628 1.15739 0.84438 0.78626 0.79534 1.90903 1.23673 1.69638 1.67808 1.48448 1.10158 1.45025 1.34514 1.23522 0.84701 1.00804 0.97193 1.24691 0.97694 0.86597 0.94751 0.81671 1.23928 0.95984 1.02115 0.94387 1.24051 0.93078 0.90537 0.91527 0.87649 1.23758 0.94445 0.94051 0.97020 1.63770 1.05697 1.29735 1.30601 1.22308 1.00053 0.96005 0.98528 1.20453 0.87827 0.97337 0.88664 0.94176 0.97069 0.91126 0.89219 0.90593 0.92895 0.75712 0.90100 0.90271 0.87303 0.89996 0.93637 0.88398 0.83917 0.92103 0.94100 0.99388 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.37 11.19 21.65 0.24 -57.12 16 2 C -0.06 -3.14 4.91 84.86 0.42 -2.73 16 3 Si 0.97 45.15 29.59 68.60 2.03 47.18 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 7 C -0.26 -14.40 9.58 84.03 0.81 -13.59 16 8 H 0.08 3.93 7.89 -2.91 -0.02 3.90 16 9 N -0.61 -31.16 2.99 -699.11 -2.09 -33.25 16 10 C 0.14 5.79 6.52 86.36 0.56 6.35 16 11 C -0.12 -3.76 5.55 30.67 0.17 -3.59 16 12 C 0.18 6.46 2.42 45.02 0.11 6.57 16 13 N -0.72 -20.69 5.05 -457.68 -2.31 -23.00 16 14 C 0.71 22.93 8.51 179.06 1.52 24.45 16 15 O -0.64 -27.24 16.35 -4.01 -0.07 -27.31 16 16 N -0.64 -14.44 2.93 -786.17 -2.31 -16.74 16 17 C 0.06 0.81 5.65 87.16 0.49 1.30 16 18 C 0.07 0.68 5.82 46.85 0.27 0.95 16 19 H 0.17 0.67 8.14 -2.39 -0.02 0.65 16 20 C -0.13 -1.58 6.82 33.45 0.23 -1.36 16 21 C 0.11 2.17 5.17 46.92 0.24 2.41 16 22 H 0.11 2.45 8.06 -2.39 -0.02 2.43 16 23 C 0.04 0.59 7.13 86.66 0.62 1.21 16 24 N -0.67 -7.92 7.36 -458.85 -3.38 -11.29 16 25 C -0.13 -5.40 5.65 30.67 0.17 -5.23 16 26 C 0.18 9.54 5.31 86.36 0.46 10.00 16 27 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 28 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 2.69 7.93 -2.39 -0.02 2.67 16 30 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.05 2.23 7.58 -2.39 -0.02 2.21 16 33 H 0.41 8.75 7.68 -92.71 -0.71 8.03 16 34 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.08 0.88 7.87 -2.39 -0.02 0.86 16 36 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.34 3.50 8.52 -89.69 -0.76 2.73 16 41 H 0.06 2.45 8.14 -2.39 -0.02 2.44 16 42 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 43 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 44 H 0.06 3.26 6.04 -2.38 -0.01 3.25 16 Total: -1.00 -74.55 343.38 -2.28 -76.83 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -0.47 Total: 17.95 kcal Atomic # 6 Polarization: 20.69 SS G_CDS: 6.07 Total: 26.76 kcal Atomic # 7 Polarization: -131.57 SS G_CDS: -9.84 Total: -141.41 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.07 Total: -27.31 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -74.55 -2.28 -76.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891523739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.328 kcal (2) G-P(sol) polarization free energy of solvation -74.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds