Wall clock time and date at job start Tue Mar 31 2020 03:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46896 * 111.00244 * 2 1 4 4 C 1.50709 * 109.46831 * 293.95125 * 3 2 1 5 5 H 1.07997 * 120.00112 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99649 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99776 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 120.00451 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47209 * 89.99589 * 8 6 4 10 10 H 1.48499 * 109.47151 * 209.99969 * 8 6 4 11 11 H 1.48500 * 109.46807 * 329.99956 * 8 6 4 12 12 C 1.46907 * 110.99692 * 123.95097 * 2 1 3 13 13 C 1.53001 * 109.47059 * 164.01161 * 12 2 1 14 14 H 1.09007 * 109.47370 * 58.50500 * 13 12 2 15 15 O 1.42899 * 109.47149 * 298.51040 * 13 12 2 16 16 C 1.52999 * 109.47005 * 178.50999 * 13 12 2 17 17 N 1.46506 * 109.46929 * 185.00191 * 16 13 12 18 18 N 1.29099 * 126.00942 * 89.97005 * 17 16 13 19 19 N 1.29020 * 110.26132 * 179.97438 * 18 17 16 20 20 C 1.32909 * 108.63246 * 359.97438 * 19 18 17 21 21 C 1.34395 * 126.00344 * 269.97308 * 17 16 13 22 22 C 1.50535 * 129.25726 * 0.21349 * 21 17 16 23 23 C 1.53434 * 108.32513 * 163.51579 * 22 21 17 24 24 C 1.53108 * 109.55144 * 49.71052 * 23 22 21 25 25 C 1.50603 * 129.15852 * 180.20650 * 20 19 18 26 26 H 1.08997 * 109.47091 * 301.53619 * 1 2 3 27 27 H 1.09006 * 109.46530 * 61.53574 * 1 2 3 28 28 H 1.09005 * 109.47328 * 181.53051 * 1 2 3 29 29 H 1.09003 * 109.47364 * 53.94785 * 3 2 1 30 30 H 1.09004 * 109.47471 * 173.95201 * 3 2 1 31 31 H 0.96996 * 120.00496 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46879 * 44.01421 * 12 2 1 33 33 H 1.09000 * 109.47058 * 284.00826 * 12 2 1 34 34 H 0.96702 * 114.00001 * 300.00288 * 15 13 12 35 35 H 1.08997 * 109.46973 * 65.00305 * 16 13 12 36 36 H 1.08998 * 109.46690 * 304.99638 * 16 13 12 37 37 H 1.08998 * 109.69319 * 283.23434 * 22 21 17 38 38 H 1.09010 * 109.69167 * 43.81468 * 22 21 17 39 39 H 1.09001 * 109.46560 * 289.68351 * 23 22 21 40 40 H 1.09003 * 109.45766 * 169.73211 * 23 22 21 41 41 H 1.09003 * 109.45669 * 169.88860 * 24 23 22 42 42 H 1.09006 * 109.45053 * 49.95793 * 24 23 22 43 43 H 1.09000 * 109.69266 * 283.12917 * 25 20 19 44 44 H 1.08993 * 109.69372 * 43.67633 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2986 5 1 1.0747 1.5111 -2.0489 6 6 2.0269 3.3493 -1.5286 7 7 1.7145 3.9388 -2.6620 8 14 3.0000 4.2761 -0.2311 9 1 4.4524 4.0635 -0.4559 10 1 2.6919 5.7259 -0.3228 11 1 2.6294 3.7755 1.1170 12 6 1.9954 -0.7660 1.1377 13 6 3.4727 -1.0840 0.8986 14 1 4.0282 -0.1549 0.7698 15 8 3.6034 -1.8839 -0.2783 16 6 4.0306 -1.8495 2.1001 17 7 5.4714 -2.0496 1.9255 18 7 6.4026 -1.2494 2.3244 19 7 7.5619 -1.7224 2.0128 20 6 7.3927 -2.8808 1.3836 21 6 6.0558 -3.0985 1.3218 22 6 5.4213 -4.3040 0.6813 23 6 6.4688 -4.9841 -0.2100 24 6 7.7645 -5.1817 0.5813 25 6 8.4292 -3.8203 0.8258 26 1 -0.3633 0.5375 0.8759 27 1 -0.3632 0.4898 -0.9035 28 1 -0.3634 -1.0273 0.0274 29 1 1.5611 1.9274 0.8309 30 1 3.0798 1.3444 0.1083 31 1 1.9884 4.8551 -2.8238 32 1 1.4355 -1.6956 1.2399 33 1 1.8933 -0.1781 2.0499 34 1 3.1333 -2.7278 -0.2344 35 1 3.5358 -2.8177 2.1755 36 1 3.8509 -1.2776 3.0104 37 1 5.0894 -4.9981 1.4534 38 1 4.5700 -3.9929 0.0757 39 1 6.6667 -4.3583 -1.0802 40 1 6.0923 -5.9531 -0.5381 41 1 8.4424 -5.8199 0.0145 42 1 7.5374 -5.6530 1.5377 43 1 8.8155 -3.4251 -0.1138 44 1 9.2449 -3.9331 1.5398 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899906506.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:27 Heat of formation + Delta-G solvation = 45.085108 kcal Electronic energy + Delta-G solvation = -24425.069988 eV Core-core repulsion = 20993.424426 eV Total energy + Delta-G solvation = -3431.645562 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.37427 -38.48173 -37.22475 -36.01227 -34.41284 -32.49436 -31.20463 -30.19617 -29.83726 -28.12310 -26.86953 -24.28947 -23.93995 -22.75985 -22.43953 -20.98015 -20.15152 -19.71138 -17.61374 -16.92849 -16.80250 -15.97429 -15.61428 -15.25603 -14.72723 -14.57041 -14.31613 -14.14322 -13.94719 -13.85107 -13.64230 -13.29121 -13.05268 -12.47566 -12.37305 -12.33496 -11.74382 -11.59806 -11.56089 -11.33422 -11.31218 -11.18468 -11.15033 -11.02284 -10.55124 -10.52861 -10.46363 -10.30242 -9.92227 -9.60051 -9.28933 -8.81550 -8.57827 -7.49458 -6.06689 -4.04288 1.60301 2.28837 2.59398 3.29023 3.35530 3.37640 3.96940 4.20936 4.22736 4.40903 4.42237 4.53509 4.60730 4.73384 4.79519 4.88801 5.06726 5.07573 5.18076 5.20243 5.21738 5.29761 5.33656 5.40337 5.60745 5.64894 5.68965 5.75555 5.86269 5.90479 5.95696 6.03997 6.08276 6.12830 6.25982 6.55283 6.60820 6.76559 6.87955 7.51207 7.66017 7.80056 7.92211 8.58365 8.61215 9.01322 9.54677 11.06383 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.018842 B = 0.004018 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.652841 B = 6966.598340 C = 7512.601162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.520 5.520 3 C 0.161 3.839 4 C -0.509 4.509 5 H 0.081 0.919 6 C 0.070 3.930 7 N -0.899 5.899 8 Si 0.871 3.129 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.269 1.269 12 C 0.026 3.974 13 C 0.099 3.901 14 H 0.113 0.887 15 O -0.528 6.528 16 C 0.079 3.921 17 N -0.271 5.271 18 N -0.097 5.097 19 N -0.266 5.266 20 C -0.028 4.028 21 C -0.005 4.005 22 C -0.046 4.046 23 C -0.115 4.115 24 C -0.118 4.118 25 C -0.032 4.032 26 H 0.013 0.987 27 H 0.081 0.919 28 H 0.047 0.953 29 H -0.012 1.012 30 H 0.023 0.977 31 H 0.264 0.736 32 H 0.071 0.929 33 H 0.038 0.962 34 H 0.363 0.637 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.816 -21.406 9.822 24.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.244 5.244 3 C 0.035 3.965 4 C -0.547 4.547 5 H 0.099 0.901 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.698 3.302 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.194 1.194 12 C -0.104 4.104 13 C 0.038 3.962 14 H 0.131 0.869 15 O -0.332 6.332 16 C -0.043 4.043 17 N -0.062 5.062 18 N -0.074 5.074 19 N -0.130 5.130 20 C -0.168 4.168 21 C -0.139 4.139 22 C -0.086 4.086 23 C -0.153 4.153 24 C -0.157 4.157 25 C -0.071 4.071 26 H 0.031 0.969 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.006 0.994 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.209 0.791 35 H 0.123 0.877 36 H 0.133 0.867 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.641 -19.556 9.845 22.879 hybrid contribution -0.539 -0.117 1.190 1.312 sum 6.102 -19.672 11.035 23.367 Atomic orbital electron populations 1.22240 0.87678 0.99374 1.01601 1.61855 1.07308 1.16679 1.38540 1.20256 0.94902 0.83843 0.97522 1.20972 1.35799 0.97133 1.00783 0.90082 1.24880 0.95673 0.97370 0.95252 1.69882 1.46819 1.13310 1.23764 0.86925 0.81173 0.79427 0.82636 1.19990 1.21043 1.19364 1.22639 0.94320 0.99195 0.94267 1.22363 0.96284 0.94631 0.82912 0.86913 1.86826 1.75026 1.33326 1.38022 1.22988 0.74395 1.04008 1.02938 1.46798 1.08580 1.14072 1.36770 1.78597 0.90889 1.16856 1.21072 1.74779 1.15490 1.08885 1.13851 1.21619 0.93425 0.96513 1.05264 1.21725 0.93718 0.94401 1.04092 1.20239 0.98811 0.91182 0.98325 1.21572 0.94553 1.00790 0.98371 1.21641 0.96942 0.96359 1.00710 1.19931 0.94711 0.91688 1.00747 0.96865 0.89994 0.93424 0.99391 0.95908 0.92611 0.91081 0.94408 0.79081 0.87681 0.86724 0.90285 0.89417 0.90841 0.90633 0.90739 0.91628 0.90047 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 9.32 60.06 0.56 1.26 16 2 N -0.52 -10.21 4.60 -244.36 -1.12 -11.34 16 3 C 0.16 3.86 3.64 -4.97 -0.02 3.84 16 4 C -0.51 -14.54 9.09 -34.44 -0.31 -14.85 16 5 H 0.08 2.51 7.34 -52.49 -0.39 2.13 16 6 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 7 N -0.90 -27.85 13.96 55.43 0.77 -27.07 16 8 Si 0.87 22.03 27.47 -169.99 -4.67 17.36 16 9 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 12 C 0.03 0.37 4.63 -3.82 -0.02 0.35 16 13 C 0.10 1.40 3.23 -26.73 -0.09 1.32 16 14 H 0.11 2.07 6.56 -51.92 -0.34 1.73 16 15 O -0.53 -7.64 12.09 -35.23 -0.43 -8.06 16 16 C 0.08 0.84 5.88 -4.04 -0.02 0.82 16 17 N -0.27 -3.75 3.29 -57.26 -0.19 -3.94 16 18 N -0.10 -1.66 13.19 60.35 0.80 -0.87 16 19 N -0.27 -4.58 12.40 33.17 0.41 -4.17 16 20 C -0.03 -0.39 7.11 -83.12 -0.59 -0.98 16 21 C -0.01 -0.06 6.55 -82.50 -0.54 -0.60 16 22 C -0.05 -0.38 5.94 -27.74 -0.16 -0.54 16 23 C -0.11 -0.83 5.90 -26.45 -0.16 -0.98 16 24 C -0.12 -0.83 5.90 -26.44 -0.16 -0.99 16 25 C -0.03 -0.31 6.30 -27.69 -0.17 -0.48 16 26 H 0.01 0.22 8.13 -51.93 -0.42 -0.20 16 27 H 0.08 1.66 6.90 -51.93 -0.36 1.30 16 28 H 0.05 0.68 7.97 -51.93 -0.41 0.27 16 29 H -0.01 -0.28 7.17 -51.93 -0.37 -0.65 16 30 H 0.02 0.57 5.81 -51.93 -0.30 0.26 16 31 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 32 H 0.07 0.77 7.88 -51.93 -0.41 0.36 16 33 H 0.04 0.53 8.05 -51.93 -0.42 0.11 16 34 H 0.36 3.49 7.77 45.56 0.35 3.85 16 35 H 0.10 0.72 7.96 -51.93 -0.41 0.30 16 36 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.67 5.79 -51.92 -0.30 0.37 16 39 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 347.44 15.07 5.24 5.24 Total: -1.00 -36.09 347.44 -7.30 -43.39 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -6.33 Total: -0.65 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -1.78 Total: -9.89 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.67 Total: -47.38 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -0.43 Total: -8.06 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.09 -7.30 -43.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899906506.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.474 kcal (2) G-P(sol) polarization free energy of solvation -36.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds