Wall clock time and date at job start Tue Mar 31 2020 03:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46896 * 111.00244 * 2 1 4 4 C 1.50709 * 109.46831 * 293.95125 * 3 2 1 5 5 H 1.07997 * 120.00112 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99649 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99776 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 120.00451 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47209 * 89.99589 * 8 6 4 10 10 H 1.48499 * 109.47151 * 209.99969 * 8 6 4 11 11 H 1.48500 * 109.46807 * 329.99956 * 8 6 4 12 12 C 1.46907 * 110.99692 * 123.95097 * 2 1 3 13 13 C 1.53001 * 109.47059 * 164.01161 * 12 2 1 14 14 H 1.09007 * 109.47370 * 58.50500 * 13 12 2 15 15 O 1.42899 * 109.47149 * 298.51040 * 13 12 2 16 16 C 1.52999 * 109.47005 * 178.50999 * 13 12 2 17 17 N 1.46506 * 109.46929 * 185.00191 * 16 13 12 18 18 N 1.29099 * 126.00942 * 89.97005 * 17 16 13 19 19 N 1.29020 * 110.26132 * 179.97438 * 18 17 16 20 20 C 1.32909 * 108.63246 * 359.97438 * 19 18 17 21 21 C 1.34395 * 126.00344 * 269.97308 * 17 16 13 22 22 C 1.50535 * 129.25726 * 0.21349 * 21 17 16 23 23 C 1.53434 * 108.32513 * 163.51579 * 22 21 17 24 24 C 1.53108 * 109.55144 * 49.71052 * 23 22 21 25 25 C 1.50603 * 129.15852 * 180.20650 * 20 19 18 26 26 H 1.08997 * 109.47091 * 301.53619 * 1 2 3 27 27 H 1.09006 * 109.46530 * 61.53574 * 1 2 3 28 28 H 1.09005 * 109.47328 * 181.53051 * 1 2 3 29 29 H 1.09003 * 109.47364 * 53.94785 * 3 2 1 30 30 H 1.09004 * 109.47471 * 173.95201 * 3 2 1 31 31 H 0.96996 * 120.00496 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46879 * 44.01421 * 12 2 1 33 33 H 1.09000 * 109.47058 * 284.00826 * 12 2 1 34 34 H 0.96702 * 114.00001 * 300.00288 * 15 13 12 35 35 H 1.08997 * 109.46973 * 65.00305 * 16 13 12 36 36 H 1.08998 * 109.46690 * 304.99638 * 16 13 12 37 37 H 1.08998 * 109.69319 * 283.23434 * 22 21 17 38 38 H 1.09010 * 109.69167 * 43.81468 * 22 21 17 39 39 H 1.09001 * 109.46560 * 289.68351 * 23 22 21 40 40 H 1.09003 * 109.45766 * 169.73211 * 23 22 21 41 41 H 1.09003 * 109.45669 * 169.88860 * 24 23 22 42 42 H 1.09006 * 109.45053 * 49.95793 * 24 23 22 43 43 H 1.09000 * 109.69266 * 283.12917 * 25 20 19 44 44 H 1.08993 * 109.69372 * 43.67633 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2986 5 1 1.0747 1.5111 -2.0489 6 6 2.0269 3.3493 -1.5286 7 7 1.7145 3.9388 -2.6620 8 14 3.0000 4.2761 -0.2311 9 1 4.4524 4.0635 -0.4559 10 1 2.6919 5.7259 -0.3228 11 1 2.6294 3.7755 1.1170 12 6 1.9954 -0.7660 1.1377 13 6 3.4727 -1.0840 0.8986 14 1 4.0282 -0.1549 0.7698 15 8 3.6034 -1.8839 -0.2783 16 6 4.0306 -1.8495 2.1001 17 7 5.4714 -2.0496 1.9255 18 7 6.4026 -1.2494 2.3244 19 7 7.5619 -1.7224 2.0128 20 6 7.3927 -2.8808 1.3836 21 6 6.0558 -3.0985 1.3218 22 6 5.4213 -4.3040 0.6813 23 6 6.4688 -4.9841 -0.2100 24 6 7.7645 -5.1817 0.5813 25 6 8.4292 -3.8203 0.8258 26 1 -0.3633 0.5375 0.8759 27 1 -0.3632 0.4898 -0.9035 28 1 -0.3634 -1.0273 0.0274 29 1 1.5611 1.9274 0.8309 30 1 3.0798 1.3444 0.1083 31 1 1.9884 4.8551 -2.8238 32 1 1.4355 -1.6956 1.2399 33 1 1.8933 -0.1781 2.0499 34 1 3.1333 -2.7278 -0.2344 35 1 3.5358 -2.8177 2.1755 36 1 3.8509 -1.2776 3.0104 37 1 5.0894 -4.9981 1.4534 38 1 4.5700 -3.9929 0.0757 39 1 6.6667 -4.3583 -1.0802 40 1 6.0923 -5.9531 -0.5381 41 1 8.4424 -5.8199 0.0145 42 1 7.5374 -5.6530 1.5377 43 1 8.8155 -3.4251 -0.1138 44 1 9.2449 -3.9331 1.5398 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899906506.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:27 Heat of formation + Delta-G solvation = 15.654378 kcal Electronic energy + Delta-G solvation = -24426.346200 eV Core-core repulsion = 20993.424426 eV Total energy + Delta-G solvation = -3432.921774 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.38201 -39.67451 -37.91503 -37.42387 -35.44115 -34.65313 -32.13950 -31.07982 -30.81447 -29.99609 -28.01674 -25.57814 -25.03261 -23.83640 -23.55308 -21.93297 -21.73728 -20.46860 -19.16846 -18.45765 -17.83865 -17.19441 -16.67658 -16.36528 -16.20210 -15.93830 -15.59611 -14.99206 -14.85279 -14.72167 -14.67877 -14.53123 -14.42857 -14.28640 -13.39281 -13.27951 -13.07415 -13.02574 -12.72889 -12.53016 -12.48354 -12.44755 -12.17759 -12.00693 -11.89360 -11.79074 -11.72526 -11.59741 -11.36443 -11.27703 -10.83713 -10.60036 -9.78208 -9.01705 -8.34228 -6.36135 0.60482 1.26037 1.28768 1.36455 1.40476 1.54220 2.26553 2.96834 3.01466 3.23452 3.38489 3.58431 3.68377 3.77755 3.93654 3.98219 4.07582 4.13835 4.22110 4.26585 4.46086 4.48545 4.59249 4.61358 4.63647 4.67685 4.68496 4.85589 4.87851 4.98315 5.05182 5.05760 5.15697 5.21358 5.23963 5.27279 5.40015 5.50411 5.50697 5.70118 5.92329 6.32927 6.59458 6.70579 6.89959 7.27071 7.51437 8.82506 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.018842 B = 0.004018 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.652841 B = 6966.598340 C = 7512.601162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.540 5.540 3 C 0.173 3.827 4 C -0.513 4.513 5 H 0.041 0.959 6 C 0.011 3.989 7 N -0.945 5.945 8 Si 0.937 3.063 9 H -0.277 1.277 10 H -0.276 1.276 11 H -0.250 1.250 12 C 0.028 3.972 13 C 0.108 3.892 14 H 0.059 0.941 15 O -0.552 6.552 16 C 0.082 3.918 17 N -0.271 5.271 18 N -0.146 5.146 19 N -0.308 5.308 20 C -0.050 4.050 21 C 0.004 3.996 22 C -0.046 4.046 23 C -0.115 4.115 24 C -0.111 4.111 25 C -0.035 4.035 26 H 0.019 0.981 27 H 0.042 0.958 28 H 0.091 0.909 29 H -0.012 1.012 30 H 0.015 0.985 31 H 0.267 0.733 32 H 0.120 0.880 33 H 0.047 0.953 34 H 0.386 0.614 35 H 0.157 0.843 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.054 0.946 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.200 -24.698 11.688 27.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.264 5.264 3 C 0.046 3.954 4 C -0.551 4.551 5 H 0.060 0.940 6 C -0.186 4.186 7 N -0.586 5.586 8 Si 0.761 3.239 9 H -0.203 1.203 10 H -0.201 1.201 11 H -0.173 1.173 12 C -0.101 4.101 13 C 0.046 3.954 14 H 0.078 0.922 15 O -0.360 6.360 16 C -0.039 4.039 17 N -0.063 5.063 18 N -0.123 5.123 19 N -0.171 5.171 20 C -0.191 4.191 21 C -0.132 4.132 22 C -0.085 4.085 23 C -0.153 4.153 24 C -0.149 4.149 25 C -0.074 4.074 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.110 0.890 29 H 0.005 0.995 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.138 0.862 33 H 0.065 0.935 34 H 0.236 0.764 35 H 0.174 0.826 36 H 0.143 0.857 37 H 0.129 0.871 38 H 0.116 0.884 39 H 0.073 0.927 40 H 0.123 0.877 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.003 -22.863 11.739 26.393 hybrid contribution -0.390 0.778 0.499 1.003 sum 5.613 -22.085 12.238 25.866 Atomic orbital electron populations 1.22213 0.86620 1.01773 0.99940 1.61672 1.08416 1.14211 1.42075 1.19928 0.94439 0.86436 0.94639 1.21278 1.34628 0.97273 1.01934 0.94037 1.25757 0.96916 0.98554 0.97418 1.70027 1.48656 1.13928 1.26024 0.85875 0.79086 0.78314 0.80646 1.20287 1.20084 1.17349 1.22778 0.94560 1.00436 0.92331 1.22051 0.95722 0.93369 0.84228 0.92247 1.86781 1.75788 1.34816 1.38570 1.23170 0.72972 1.06423 1.01345 1.47058 1.09194 1.13836 1.36199 1.78500 0.91675 1.18588 1.23560 1.74696 1.16283 1.10725 1.15385 1.22375 0.95448 0.96166 1.05159 1.22500 0.93486 0.94826 1.02353 1.20520 0.99050 0.89793 0.99160 1.21618 0.94449 1.01771 0.97450 1.21640 0.97171 0.94583 1.01531 1.20118 0.94348 0.92664 1.00266 0.96229 0.93857 0.89025 0.99458 0.96750 0.92422 0.86151 0.93480 0.76439 0.82561 0.85721 0.87107 0.88449 0.92702 0.87662 0.88663 0.90725 0.90530 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.43 9.32 127.69 1.19 2.62 16 2 N -0.54 -20.45 4.60 -927.01 -4.27 -24.71 16 3 C 0.17 8.32 3.64 85.56 0.31 8.63 16 4 C -0.51 -30.28 9.09 25.60 0.23 -30.04 16 5 H 0.04 2.71 7.34 -2.91 -0.02 2.69 16 6 C 0.01 0.67 5.47 84.65 0.46 1.13 16 7 N -0.95 -60.57 13.96 21.45 0.30 -60.27 16 8 Si 0.94 46.28 27.47 68.60 1.88 48.17 16 9 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.25 -11.46 6.54 99.48 0.65 -10.81 16 12 C 0.03 0.70 4.63 86.30 0.40 1.10 16 13 C 0.11 2.83 3.23 30.59 0.10 2.93 16 14 H 0.06 2.22 6.56 -2.38 -0.02 2.20 16 15 O -0.55 -14.74 12.09 -148.98 -1.80 -16.54 16 16 C 0.08 1.49 5.88 86.38 0.51 1.99 16 17 N -0.27 -7.15 3.29 -335.07 -1.10 -8.25 16 18 N -0.15 -5.14 13.19 37.02 0.49 -4.65 16 19 N -0.31 -10.92 12.40 -48.99 -0.61 -11.53 16 20 C -0.05 -1.37 7.11 41.75 0.30 -1.07 16 21 C 0.00 0.09 6.55 41.50 0.27 0.36 16 22 C -0.05 -0.57 5.94 29.94 0.18 -0.39 16 23 C -0.11 -1.25 5.90 30.78 0.18 -1.06 16 24 C -0.11 -1.23 5.90 30.79 0.18 -1.05 16 25 C -0.03 -0.65 6.30 29.97 0.19 -0.47 16 26 H 0.02 0.62 8.13 -2.39 -0.02 0.60 16 27 H 0.04 1.77 6.90 -2.38 -0.02 1.76 16 28 H 0.09 2.27 7.97 -2.38 -0.02 2.25 16 29 H -0.01 -0.58 7.17 -2.39 -0.02 -0.60 16 30 H 0.01 0.73 5.81 -2.38 -0.01 0.71 16 31 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 32 H 0.12 1.87 7.88 -2.39 -0.02 1.86 16 33 H 0.05 1.14 8.05 -2.39 -0.02 1.12 16 34 H 0.39 5.82 7.77 -74.06 -0.58 5.25 16 35 H 0.16 1.21 7.96 -2.39 -0.02 1.19 16 36 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.10 1.04 5.79 -2.38 -0.01 1.03 16 39 H 0.05 0.81 8.12 -2.39 -0.02 0.79 16 40 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.07 0.72 8.12 -2.38 -0.02 0.70 16 43 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -85.53 347.44 -0.23 -85.76 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.37 Total: 7.34 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 4.50 Total: -15.32 kcal Atomic # 7 Polarization: -104.23 SS G_CDS: -5.19 Total: -109.41 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -1.80 Total: -16.54 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.88 Total: 48.17 kcal Total: -85.53 -0.23 -85.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899906506.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.416 kcal (2) G-P(sol) polarization free energy of solvation -85.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds