Wall clock time and date at job start Tue Mar 31 2020 02:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 119.99706 * 2 1 4 4 C 1.50694 * 120.00192 * 180.02562 * 2 1 3 5 5 H 1.09002 * 110.41981 * 346.45565 * 4 2 1 6 6 O 1.44429 * 110.37334 * 224.15640 * 4 2 1 7 7 C 1.44422 * 105.27547 * 200.65542 * 6 4 2 8 8 C 1.54802 * 104.85922 * 40.45539 * 7 6 4 9 9 C 1.54479 * 110.37661 * 108.77033 * 4 2 1 10 10 H 1.08996 * 110.51102 * 261.59587 * 9 4 2 11 11 C 1.50696 * 110.50653 * 24.16577 * 9 4 2 12 12 O 1.21284 * 120.00307 * 89.37401 * 11 9 4 13 13 N 1.34779 * 120.00166 * 269.36612 * 11 9 4 14 14 C 1.46964 * 120.59741 * 175.66835 * 13 11 9 15 15 C 1.53364 * 108.63719 * 124.79668 * 14 13 11 16 16 N 1.46968 * 108.77712 * 49.33649 * 15 14 13 17 17 C 1.36934 * 120.59059 * 124.83893 * 16 15 14 18 18 H 1.08000 * 120.00256 * 326.11263 * 17 16 15 19 19 C 1.38817 * 119.99794 * 146.11014 * 17 16 15 20 20 N 1.31614 * 119.99973 * 348.76319 * 19 17 16 21 21 Si 1.86799 * 119.99992 * 168.76269 * 19 17 16 22 22 H 1.48498 * 109.47474 * 59.99791 * 21 19 17 23 23 H 1.48499 * 109.47397 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47086 * 299.99917 * 21 19 17 25 25 C 1.46993 * 118.79201 * 305.07944 * 16 15 14 26 26 C 1.46967 * 120.59003 * 355.69408 * 13 11 9 27 27 H 1.08000 * 120.00237 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.99795 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47242 * 275.22745 * 3 2 1 30 30 H 1.08998 * 109.47459 * 35.23467 * 3 2 1 31 31 H 1.09006 * 109.46710 * 155.23204 * 3 2 1 32 32 H 1.09002 * 110.37545 * 159.33946 * 7 6 4 33 33 H 1.09001 * 110.37629 * 281.56824 * 7 6 4 34 34 H 1.09000 * 110.61686 * 217.51061 * 8 7 6 35 35 H 1.09005 * 110.55122 * 94.70018 * 8 7 6 36 36 H 1.09004 * 109.60584 * 5.05364 * 14 13 11 37 37 H 1.08996 * 109.61330 * 244.54672 * 14 13 11 38 38 H 1.08995 * 109.61362 * 169.17277 * 15 14 13 39 39 H 1.09008 * 109.61057 * 289.50964 * 15 14 13 40 40 H 0.97001 * 119.99908 * 180.02562 * 20 19 17 41 41 H 1.08994 * 109.46783 * 295.17770 * 25 16 15 42 42 H 1.09000 * 109.75736 * 174.82721 * 25 16 15 43 43 H 1.08989 * 109.61125 * 354.94534 * 26 13 11 44 44 H 1.09002 * 109.60751 * 115.46022 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3050 -0.0006 5 1 1.3936 -2.1311 0.2383 6 8 3.1561 -1.2552 0.9426 7 6 4.0696 -2.2917 0.5219 8 6 4.0860 -2.2030 -1.0235 9 6 2.7360 -1.5372 -1.3718 10 1 2.1296 -2.2021 -1.9868 11 6 2.9609 -0.2253 -2.0784 12 8 3.9922 0.3886 -1.9038 13 7 2.0160 0.2658 -2.9045 14 6 2.1796 1.5874 -3.5262 15 6 2.0546 1.4325 -5.0469 16 7 0.8439 0.6547 -5.3453 17 6 -0.1149 1.1530 -6.1865 18 1 -0.3130 2.2144 -6.2110 19 6 -0.8321 0.2939 -7.0078 20 7 -0.4490 -0.9577 -7.1454 21 14 -2.3409 0.9143 -7.9177 22 1 -1.9525 2.0299 -8.8176 23 1 -2.9235 -0.1904 -8.7212 24 1 -3.3467 1.3964 -6.9374 25 6 0.6785 -0.6654 -4.7202 26 6 0.8035 -0.5105 -3.1993 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 2.1640 1.6666 -1.0234 30 1 1.5182 2.0395 0.5929 31 1 3.0532 1.1532 0.4306 32 1 5.0657 -2.1057 0.9236 33 1 3.7084 -3.2689 0.8424 34 1 4.1462 -3.1981 -1.4644 35 1 4.9162 -1.5832 -1.3624 36 1 3.1624 1.9889 -3.2790 37 1 1.4042 2.2615 -3.1622 38 1 1.9808 2.4164 -5.5101 39 1 2.9295 0.9105 -5.4346 40 1 -0.9500 -1.5579 -7.7196 41 1 1.4539 -1.3394 -5.0841 42 1 -0.3032 -1.0696 -4.9671 43 1 0.8774 -1.4943 -2.7363 44 1 -0.0700 0.0143 -2.8121 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906757248.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:03 Heat of formation + Delta-G solvation = -40.596512 kcal Electronic energy + Delta-G solvation = -25751.722624 eV Core-core repulsion = 22284.068877 eV Total energy + Delta-G solvation = -3467.653747 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.96478 -39.75471 -38.23705 -36.18172 -35.41762 -33.63905 -32.86071 -31.81385 -29.80818 -28.70168 -28.10560 -25.71025 -24.82779 -24.14276 -23.08873 -21.80667 -20.29524 -19.59915 -18.67243 -17.92989 -17.30889 -17.13910 -16.79056 -16.58845 -16.04604 -15.97404 -15.47330 -15.27376 -15.00933 -14.82130 -14.60358 -14.19443 -13.92815 -13.64564 -13.48092 -13.26871 -13.17073 -12.73016 -12.63115 -12.55630 -12.50036 -12.31881 -12.24975 -12.12009 -11.97635 -11.93031 -11.72145 -11.65565 -10.86872 -10.63428 -10.51384 -9.98737 -9.73449 -8.56627 -7.88055 -5.43393 1.18994 1.50255 1.50683 1.57797 1.65340 2.06211 2.51150 3.01967 3.28025 3.35846 3.56578 3.59238 3.77151 3.98736 4.06968 4.13074 4.24855 4.25118 4.33691 4.34247 4.45480 4.54983 4.65297 4.68518 4.73082 4.77879 4.78522 4.83048 4.85276 4.91682 5.00385 5.08153 5.12055 5.15022 5.23974 5.55663 5.62556 5.63858 5.67892 5.75768 5.95214 6.39466 6.55085 7.13374 7.24304 7.78097 8.34987 9.16634 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025136 B = 0.004534 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.686225 B = 6174.684548 C = 6249.731578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.143 4.143 3 C -0.115 4.115 4 C 0.131 3.869 5 H 0.111 0.889 6 O -0.385 6.385 7 C 0.047 3.953 8 C -0.141 4.141 9 C -0.146 4.146 10 H 0.123 0.877 11 C 0.530 3.470 12 O -0.581 6.581 13 N -0.594 5.594 14 C 0.109 3.891 15 C 0.134 3.866 16 N -0.605 5.605 17 C -0.269 4.269 18 H 0.064 0.936 19 C -0.038 4.038 20 N -0.932 5.932 21 Si 0.968 3.032 22 H -0.279 1.279 23 H -0.294 1.294 24 H -0.274 1.274 25 C 0.166 3.834 26 C 0.101 3.899 27 H 0.106 0.894 28 H 0.121 0.879 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.005 0.995 40 H 0.252 0.748 41 H -0.003 1.003 42 H 0.071 0.929 43 H 0.100 0.900 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.699 -3.845 15.146 15.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.143 4.143 3 C -0.172 4.172 4 C 0.073 3.927 5 H 0.129 0.871 6 O -0.304 6.304 7 C -0.029 4.029 8 C -0.179 4.179 9 C -0.167 4.167 10 H 0.141 0.859 11 C 0.319 3.681 12 O -0.462 6.462 13 N -0.326 5.326 14 C -0.015 4.015 15 C 0.007 3.993 16 N -0.329 5.329 17 C -0.399 4.399 18 H 0.082 0.918 19 C -0.234 4.234 20 N -0.577 5.577 21 Si 0.796 3.204 22 H -0.205 1.205 23 H -0.220 1.220 24 H -0.200 1.200 25 C 0.040 3.960 26 C -0.023 4.023 27 H 0.124 0.876 28 H 0.139 0.861 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.125 0.875 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.023 0.977 40 H 0.062 0.938 41 H 0.015 0.985 42 H 0.089 0.911 43 H 0.118 0.882 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.184 -3.487 15.294 16.006 hybrid contribution -0.556 0.226 -1.298 1.430 sum 2.628 -3.261 13.996 14.609 Atomic orbital electron populations 1.23874 0.94178 1.03484 0.98346 1.21497 0.95574 0.94573 1.02689 1.20862 0.99854 0.94850 1.01591 1.21976 0.89006 0.96317 0.85362 0.87141 1.89154 1.33607 1.56722 1.50919 1.23624 0.94764 0.91907 0.92626 1.23041 0.95348 1.02036 0.97517 1.22920 1.00466 0.94995 0.98308 0.85908 1.20468 0.82175 0.87370 0.78041 1.90612 1.28169 1.62072 1.65348 1.47988 1.20709 1.18830 1.45038 1.21935 1.01665 0.84282 0.93662 1.21332 0.88576 0.96058 0.93325 1.44112 1.18481 1.17950 1.52373 1.19411 1.12679 0.92993 1.14856 0.91804 1.25917 1.02860 0.96663 0.97972 1.70104 1.40693 1.05938 1.40982 0.85347 0.79675 0.77001 0.78382 1.20521 1.21978 1.19979 1.20974 0.99865 0.86333 0.88819 1.22474 0.86318 0.96154 0.97364 0.87592 0.86056 0.92390 0.91515 0.93153 0.88387 0.89302 0.87462 0.91353 0.90026 0.91339 0.91285 0.97701 0.93841 0.98514 0.91114 0.88160 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 13.27 67.78 0.90 -2.51 16 2 C -0.14 -3.58 3.77 -16.49 -0.06 -3.64 16 3 C -0.11 -3.32 8.21 71.24 0.59 -2.74 16 4 C 0.13 3.04 3.43 30.35 0.10 3.14 16 5 H 0.11 1.93 7.90 -2.39 -0.02 1.91 16 6 O -0.38 -9.99 10.54 -148.98 -1.57 -11.56 16 7 C 0.05 0.91 7.64 72.60 0.55 1.46 16 8 C -0.14 -3.13 6.63 31.72 0.21 -2.92 16 9 C -0.15 -3.66 2.72 -10.53 -0.03 -3.69 16 10 H 0.12 2.67 5.98 -2.39 -0.01 2.66 16 11 C 0.53 17.52 3.90 87.66 0.34 17.86 16 12 O -0.58 -22.74 13.98 -3.04 -0.04 -22.79 16 13 N -0.59 -20.23 2.17 -818.02 -1.78 -22.01 16 14 C 0.11 3.92 5.42 86.41 0.47 4.39 16 15 C 0.13 5.63 6.67 86.41 0.58 6.21 16 16 N -0.61 -29.25 2.95 -698.13 -2.06 -31.32 16 17 C -0.27 -14.17 9.54 84.04 0.80 -13.37 16 18 H 0.06 3.29 7.85 -2.91 -0.02 3.27 16 19 C -0.04 -2.00 5.02 84.86 0.43 -1.58 16 20 N -0.93 -52.44 11.26 21.65 0.24 -52.20 16 21 Si 0.97 42.79 29.57 68.60 2.03 44.82 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 C 0.17 7.39 5.44 86.41 0.47 7.86 16 26 C 0.10 3.34 5.70 86.42 0.49 3.83 16 27 H 0.11 2.17 8.05 -2.91 -0.02 2.15 16 28 H 0.12 2.00 7.91 -2.91 -0.02 1.98 16 29 H 0.06 1.87 4.75 -2.39 -0.01 1.86 16 30 H 0.07 1.70 8.10 -2.39 -0.02 1.68 16 31 H 0.05 1.64 7.27 -2.38 -0.02 1.63 16 32 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 1.90 6.82 -2.38 -0.02 1.88 16 36 H 0.08 2.94 6.99 -2.39 -0.02 2.93 16 37 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.07 2.80 7.93 -2.39 -0.02 2.78 16 39 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 40 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 41 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 42 H 0.07 3.48 6.27 -2.39 -0.01 3.47 16 43 H 0.10 2.68 5.32 -2.39 -0.01 2.67 16 44 H 0.07 2.30 7.77 -2.39 -0.02 2.28 16 Total: -1.00 -65.92 335.21 3.65 -62.27 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.98 Total: 18.45 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 5.84 Total: 14.32 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -3.59 Total: -105.52 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -1.61 Total: -34.34 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -65.92 3.65 -62.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906757248.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.677 kcal (2) G-P(sol) polarization free energy of solvation -65.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds