Wall clock time and date at job start Tue Mar 31 2020 03:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00027 * 2 1 4 4 H 1.09000 * 109.87118 * 358.99204 * 3 2 1 5 5 O 1.43748 * 109.99958 * 237.90369 * 3 2 1 6 6 C 1.44379 * 106.97694 * 267.01791 * 5 3 2 7 7 C 1.55003 * 103.48917 * 319.94043 * 6 5 3 8 8 C 1.54102 * 109.88150 * 119.99989 * 3 2 1 9 9 H 1.09002 * 110.48470 * 358.73136 * 8 3 2 10 10 C 1.50699 * 110.48828 * 236.22114 * 8 3 2 11 11 O 1.21283 * 119.99816 * 359.97438 * 10 8 3 12 12 N 1.34771 * 119.99847 * 179.72450 * 10 8 3 13 13 C 1.46504 * 119.99557 * 180.27300 * 12 10 8 14 14 H 1.08999 * 109.47276 * 324.99832 * 13 12 10 15 15 C 1.52994 * 109.47284 * 85.00106 * 13 12 10 16 16 C 1.53003 * 109.46819 * 205.00093 * 13 12 10 17 17 C 1.53947 * 113.74234 * 161.87361 * 16 13 12 18 18 N 1.47811 * 86.03359 * 222.08026 * 17 16 13 19 19 C 1.36943 * 134.45414 * 204.63890 * 18 17 16 20 20 H 1.08003 * 119.99889 * 183.44434 * 19 18 17 21 21 C 1.38818 * 119.99932 * 3.44576 * 19 18 17 22 22 N 1.31615 * 119.99748 * 353.05666 * 21 19 18 23 23 Si 1.86803 * 119.99666 * 173.05254 * 21 19 18 24 24 H 1.48501 * 109.46802 * 94.98419 * 23 21 19 25 25 H 1.48495 * 109.46882 * 214.98211 * 23 21 19 26 26 H 1.48494 * 109.47159 * 334.98517 * 23 21 19 27 27 C 1.47576 * 91.05122 * 24.54838 * 18 17 16 28 28 H 1.07997 * 120.00065 * 180.02562 * 1 2 3 29 29 H 1.08008 * 119.99784 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.00018 * 179.97438 * 2 1 3 31 31 H 1.08994 * 110.61884 * 78.44031 * 6 5 3 32 32 H 1.09000 * 110.61796 * 201.28325 * 6 5 3 33 33 H 1.08994 * 110.90446 * 278.82613 * 7 6 5 34 34 H 1.09002 * 110.90210 * 155.21868 * 7 6 5 35 35 H 0.96998 * 120.00707 * 0.27280 * 12 10 8 36 36 H 1.09005 * 109.47704 * 175.22992 * 15 13 12 37 37 H 1.08998 * 109.46900 * 295.23445 * 15 13 12 38 38 H 1.09007 * 109.47246 * 55.22932 * 15 13 12 39 39 H 1.09007 * 112.94176 * 293.45906 * 16 13 12 40 40 H 1.09005 * 113.76766 * 336.34581 * 17 16 13 41 41 H 1.09002 * 113.77409 * 107.74093 * 17 16 13 42 42 H 0.97008 * 119.99560 * 179.97438 * 22 21 19 43 43 H 1.09007 * 113.76600 * 221.15099 * 27 18 17 44 44 H 1.08996 * 113.87224 * 89.76772 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3611 2.1384 -0.0180 5 8 2.9309 1.3720 -1.1443 6 6 4.2194 0.8725 -0.7264 7 6 4.3943 1.4672 0.6943 8 6 2.9530 1.3967 1.2550 9 1 2.8266 0.5109 1.8776 10 6 2.6309 2.6420 2.0401 11 8 1.7705 3.4011 1.6471 12 7 3.2955 2.9096 3.1816 13 6 2.9782 4.1173 3.9480 14 1 2.7195 4.9247 3.2630 15 6 1.7944 3.8363 4.8755 16 6 4.1940 4.5260 4.7821 17 6 4.1466 5.9842 5.2735 18 7 5.5801 6.0427 4.9176 19 6 6.6408 6.8033 5.3319 20 1 7.6066 6.6839 4.8633 21 6 6.4749 7.7276 6.3542 22 7 5.2730 7.9716 6.8320 23 14 7.9574 8.6249 7.0518 24 1 8.1083 9.9356 6.3702 25 1 7.7637 8.8434 8.5077 26 1 9.1784 7.8091 6.8317 27 6 5.4096 4.9514 3.9389 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 4.2150 -0.2168 -0.6886 32 1 5.0041 1.2291 -1.3936 33 1 4.7420 2.4989 0.6439 34 1 5.0737 0.8576 1.2901 35 1 3.9839 2.3028 3.4959 36 1 1.6121 4.7067 5.5060 37 1 0.9066 3.6277 4.2786 38 1 2.0210 2.9743 5.5030 39 1 4.4332 3.8066 5.5653 40 1 3.5161 6.6326 4.6650 41 1 3.9536 6.0819 6.3418 42 1 5.1571 8.6172 7.5467 43 1 6.2231 4.2259 3.9437 44 1 5.1510 5.2939 2.9370 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970448360.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:20 Heat of formation + Delta-G solvation = -34.004891 kcal Electronic energy + Delta-G solvation = -24036.071622 eV Core-core repulsion = 20568.703709 eV Total energy + Delta-G solvation = -3467.367913 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.64275 -40.26734 -39.22031 -36.21042 -34.65765 -34.22679 -33.47667 -31.49094 -29.48771 -29.28099 -26.63336 -25.82324 -24.76125 -23.39973 -22.49089 -21.34677 -20.85121 -20.51445 -18.81257 -18.37450 -17.53867 -17.14976 -16.98597 -16.79006 -16.09023 -15.83850 -15.71727 -15.28131 -14.84662 -14.70484 -14.63264 -14.08778 -13.94308 -13.45093 -13.26206 -13.16483 -13.09247 -12.99485 -12.82265 -12.66314 -12.44791 -12.35327 -12.20158 -12.04696 -11.86196 -11.79708 -11.58634 -11.25382 -10.82320 -10.81211 -10.66838 -10.35289 -10.05184 -8.93878 -7.92142 -5.24618 1.25383 1.45341 1.46793 1.56371 1.61607 2.12265 2.46888 3.08276 3.29205 3.37351 3.47016 3.56512 3.69565 3.79907 3.96977 4.16172 4.22459 4.25087 4.25985 4.31326 4.46280 4.55842 4.56890 4.76575 4.78935 4.85113 4.85493 4.85952 4.91146 4.95678 5.05680 5.09263 5.10806 5.24117 5.29688 5.52143 5.55274 5.62112 5.64833 5.81869 5.92853 5.93362 6.59665 6.90883 7.27410 7.60068 8.55901 9.25310 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029606 B = 0.003127 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.516252 B = 8951.844552 C = 9616.800722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.181 4.181 3 C 0.108 3.892 4 H 0.085 0.915 5 O -0.393 6.393 6 C 0.040 3.960 7 C -0.140 4.140 8 C -0.128 4.128 9 H 0.143 0.857 10 C 0.520 3.480 11 O -0.584 6.584 12 N -0.702 5.702 13 C 0.161 3.839 14 H 0.056 0.944 15 C -0.151 4.151 16 C -0.107 4.107 17 C 0.168 3.832 18 N -0.644 5.644 19 C -0.238 4.238 20 H 0.084 0.916 21 C -0.067 4.067 22 N -0.953 5.953 23 Si 0.979 3.021 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.265 1.265 27 C 0.129 3.871 28 H 0.124 0.876 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.126 0.874 35 H 0.416 0.584 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.008 0.992 41 H 0.046 0.954 42 H 0.249 0.751 43 H 0.066 0.934 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.475 -21.807 -10.303 24.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.199 4.199 3 C 0.050 3.950 4 H 0.103 0.897 5 O -0.312 6.312 6 C -0.036 4.036 7 C -0.178 4.178 8 C -0.149 4.149 9 H 0.161 0.839 10 C 0.307 3.693 11 O -0.465 6.465 12 N -0.353 5.353 13 C 0.056 3.944 14 H 0.074 0.926 15 C -0.210 4.210 16 C -0.127 4.127 17 C 0.042 3.958 18 N -0.370 5.370 19 C -0.366 4.366 20 H 0.101 0.899 21 C -0.260 4.260 22 N -0.602 5.602 23 Si 0.807 3.193 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.189 1.189 27 C 0.004 3.996 28 H 0.142 0.858 29 H 0.105 0.895 30 H 0.152 0.848 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.084 0.916 34 H 0.145 0.855 35 H 0.253 0.747 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.126 0.874 40 H 0.026 0.974 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.084 0.916 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -4.949 -20.962 -10.597 24.004 hybrid contribution 0.718 1.126 0.688 1.502 sum -4.231 -19.836 -9.909 22.573 Atomic orbital electron populations 1.24093 0.95996 1.02721 0.97939 1.23332 0.96538 0.98074 1.01968 1.21822 0.92233 0.96789 0.84188 0.89718 1.88955 1.22988 1.85522 1.33765 1.23825 0.85233 0.99699 0.94845 1.23205 0.93980 1.03202 0.97435 1.22716 0.97679 0.97189 0.97323 0.83929 1.20786 0.80501 0.87365 0.80664 1.90679 1.34553 1.51324 1.69902 1.45862 1.40366 1.25453 1.23576 1.20736 0.94441 0.86969 0.92287 0.92594 1.22037 0.96963 1.02807 0.99155 1.23423 0.93639 0.97392 0.98199 1.22159 0.84448 0.90997 0.98170 1.46489 1.05248 1.40874 1.44391 1.19451 0.89198 1.14594 1.13370 0.89872 1.25650 0.99497 1.00838 1.00032 1.70018 1.21799 1.37990 1.30382 0.85064 0.78987 0.78151 0.77130 1.21782 1.21838 1.18948 1.22660 0.95726 0.89267 0.91967 0.85839 0.89517 0.84817 0.89468 0.87862 0.91552 0.85550 0.74687 0.91990 0.93117 0.90437 0.87364 0.97448 0.93574 0.94227 0.91621 0.95371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 14.32 67.79 0.97 -1.76 16 2 C -0.18 -2.98 8.88 25.65 0.23 -2.75 16 3 C 0.11 2.34 3.44 30.22 0.10 2.44 16 4 H 0.09 2.44 6.11 -2.39 -0.01 2.42 16 5 O -0.39 -9.18 11.18 -148.98 -1.67 -10.85 16 6 C 0.04 0.57 7.66 72.67 0.56 1.13 16 7 C -0.14 -1.92 6.69 31.90 0.21 -1.70 16 8 C -0.13 -2.20 3.06 -10.55 -0.03 -2.23 16 9 H 0.14 1.54 7.69 -2.39 -0.02 1.52 16 10 C 0.52 13.12 6.98 87.66 0.61 13.73 16 11 O -0.58 -20.49 14.92 -3.04 -0.05 -20.54 16 12 N -0.70 -15.76 4.94 -442.54 -2.18 -17.94 16 13 C 0.16 4.74 2.29 44.99 0.10 4.85 16 14 H 0.06 2.04 7.48 -2.39 -0.02 2.02 16 15 C -0.15 -4.03 9.46 71.98 0.68 -3.35 16 16 C -0.11 -3.62 3.35 -10.14 -0.03 -3.65 16 17 C 0.17 7.95 6.92 86.44 0.60 8.55 16 18 N -0.64 -32.98 3.70 -716.18 -2.65 -35.63 16 19 C -0.24 -13.41 10.69 84.03 0.90 -12.51 16 20 H 0.08 4.47 7.84 -2.91 -0.02 4.44 16 21 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 22 N -0.95 -57.92 11.42 21.65 0.25 -57.67 16 23 Si 0.98 45.75 29.56 68.60 2.03 47.77 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 26 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 27 C 0.13 4.94 8.38 86.48 0.72 5.66 16 28 H 0.12 1.37 8.06 -2.91 -0.02 1.35 16 29 H 0.09 1.62 7.85 -2.91 -0.02 1.60 16 30 H 0.13 1.54 8.06 -2.91 -0.02 1.51 16 31 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.20 7.86 -2.39 -0.02 1.18 16 34 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.42 6.54 8.60 -92.71 -0.80 5.74 16 36 H 0.06 1.77 7.99 -2.38 -0.02 1.75 16 37 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 39 H 0.11 3.32 8.14 -2.38 -0.02 3.30 16 40 H 0.01 0.39 8.03 -2.38 -0.02 0.37 16 41 H 0.05 2.42 7.17 -2.39 -0.02 2.40 16 42 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 43 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 44 H 0.03 1.12 8.10 -2.39 -0.02 1.10 16 Total: -1.00 -75.71 360.79 2.00 -73.71 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.18 Total: 16.12 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 6.09 Total: 5.01 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -4.59 Total: -111.24 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -1.71 Total: -31.38 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -75.71 2.00 -73.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970448360.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.706 kcal (2) G-P(sol) polarization free energy of solvation -75.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds