Wall clock time and date at job start Tue Mar 31 2020 03:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00212 * 2 1 4 4 H 1.08997 * 109.86812 * 358.99513 * 3 2 1 5 5 O 1.43740 * 110.00176 * 237.90523 * 3 2 1 6 6 C 1.44377 * 106.97658 * 267.01666 * 5 3 2 7 7 C 1.55217 * 103.56731 * 320.01472 * 6 5 3 8 8 C 1.54100 * 109.87893 * 120.00215 * 3 2 1 9 9 H 1.09001 * 110.48719 * 358.73514 * 8 3 2 10 10 C 1.50700 * 110.48657 * 236.22104 * 8 3 2 11 11 O 1.21276 * 119.99864 * 1.84541 * 10 8 3 12 12 N 1.34779 * 120.00202 * 181.84210 * 10 8 3 13 13 C 1.47026 * 125.64616 * 359.95784 * 12 10 8 14 14 C 1.54316 * 107.27118 * 181.09319 * 13 12 10 15 15 C 1.55161 * 102.94110 * 22.19563 * 14 13 12 16 16 H 1.09002 * 111.03323 * 82.58810 * 15 14 13 17 17 N 1.46502 * 111.00264 * 206.42255 * 15 14 13 18 18 C 1.46500 * 120.00032 * 52.19472 * 17 15 14 19 19 C 1.36937 * 119.99895 * 232.19470 * 17 15 14 20 20 H 1.07997 * 120.00237 * 339.56205 * 19 17 15 21 21 C 1.38815 * 119.99793 * 159.27919 * 19 17 15 22 22 N 1.31615 * 119.99985 * 345.41888 * 21 19 17 23 23 Si 1.86803 * 119.99768 * 165.41406 * 21 19 17 24 24 H 1.48498 * 109.47099 * 94.71272 * 23 21 19 25 25 H 1.48499 * 109.46954 * 214.71175 * 23 21 19 26 26 H 1.48503 * 109.46884 * 334.70972 * 23 21 19 27 27 C 1.47419 * 125.65207 * 180.02562 * 12 10 8 28 28 H 1.08000 * 119.99549 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00422 * 179.97438 * 1 2 3 30 30 H 1.08008 * 119.99873 * 180.02562 * 2 1 3 31 31 H 1.08999 * 110.61764 * 78.44830 * 6 5 3 32 32 H 1.09011 * 110.62002 * 201.27913 * 6 5 3 33 33 H 1.09002 * 110.89659 * 278.74556 * 7 6 5 34 34 H 1.09002 * 111.02277 * 155.07022 * 7 6 5 35 35 H 1.08998 * 109.88228 * 300.51306 * 13 12 10 36 36 H 1.09000 * 109.88239 * 61.52101 * 13 12 10 37 37 H 1.08997 * 110.72173 * 263.82976 * 14 13 12 38 38 H 1.09001 * 110.72132 * 140.55564 * 14 13 12 39 39 H 1.08995 * 109.47182 * 264.86625 * 18 17 15 40 40 H 1.08996 * 109.46834 * 24.87141 * 18 17 15 41 41 H 1.09000 * 109.47156 * 144.86844 * 18 17 15 42 42 H 0.97008 * 119.99788 * 179.97438 * 22 21 19 43 43 H 1.09002 * 110.36399 * 36.99880 * 27 12 10 44 44 H 1.08997 * 110.46127 * 274.72680 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3612 2.1384 -0.0180 5 8 2.9309 1.3720 -1.1443 6 6 4.2194 0.8725 -0.7264 7 6 4.3955 1.4654 0.6972 8 6 2.9531 1.3965 1.2550 9 1 2.8267 0.5108 1.8776 10 6 2.6311 2.6419 2.0401 11 8 1.7476 3.3834 1.6654 12 7 3.3248 2.9315 3.1588 13 6 4.4151 2.1234 3.7242 14 6 4.8859 2.8275 5.0142 15 6 3.6575 3.6900 5.4074 16 1 2.9215 3.0976 5.9511 17 7 4.0659 4.8604 6.1881 18 6 5.1136 5.7500 5.6810 19 6 3.4684 5.1228 7.3920 20 1 2.5035 4.6950 7.6206 21 6 4.1056 5.9341 8.3209 22 7 5.3835 6.2163 8.1812 23 14 3.1491 6.6253 9.7689 24 1 3.3216 5.7363 10.9458 25 1 3.6568 7.9822 10.0950 26 1 1.7087 6.7070 9.4171 27 6 3.1151 4.1103 4.0188 28 1 -0.5399 0.9354 0.0004 29 1 -0.5401 -0.9353 -0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 4.2150 -0.2168 -0.6888 32 1 5.0042 1.2290 -1.3936 33 1 4.7447 2.4968 0.6484 34 1 5.0729 0.8547 1.2942 35 1 4.0516 1.1231 3.9594 36 1 5.2379 2.0606 3.0120 37 1 5.7522 3.4583 4.8150 38 1 5.1096 2.0977 5.7923 39 1 6.0744 5.4587 6.1053 40 1 5.1587 5.6757 4.5945 41 1 4.8871 6.7774 5.9659 42 1 5.8287 6.7835 8.8302 43 1 2.0535 4.3493 4.0827 44 1 3.6733 4.9650 3.6366 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972372756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:11 Heat of formation + Delta-G solvation = -26.466093 kcal Electronic energy + Delta-G solvation = -24398.524173 eV Core-core repulsion = 20931.483167 eV Total energy + Delta-G solvation = -3467.041006 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.68722 -38.96522 -37.33377 -34.90563 -33.91750 -32.69939 -31.43522 -29.80643 -28.81047 -27.85587 -26.10121 -24.46930 -23.10623 -22.55967 -21.79598 -20.12032 -19.36979 -19.04677 -17.32796 -17.06733 -16.63282 -16.09314 -15.92830 -15.42001 -14.87807 -14.39767 -14.19367 -13.96629 -13.52240 -13.43364 -13.12705 -12.92181 -12.55252 -12.45741 -12.30714 -12.11443 -11.83071 -11.66591 -11.50868 -11.32653 -11.15257 -10.98349 -10.80172 -10.54738 -10.53088 -10.29631 -9.97111 -9.90925 -9.87531 -9.78196 -9.52856 -8.63401 -8.40942 -6.87756 -5.80561 -3.25488 1.97559 2.68730 3.07444 3.34554 3.42108 3.44725 3.81782 4.25191 4.36681 4.43659 4.45609 4.84468 4.90877 4.93365 4.96499 4.98111 5.20476 5.24527 5.31639 5.42548 5.45598 5.47814 5.55354 5.61269 5.71179 5.72719 5.84899 5.87550 5.96269 6.24643 6.32615 6.34520 6.47886 6.52587 6.58097 6.67138 6.71663 6.81713 7.31172 7.63843 7.70809 7.74761 8.24424 8.30525 9.14577 9.77312 10.24610 11.24356 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031053 B = 0.003303 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.467376 B = 8475.415566 C = 8915.445907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.178 4.178 3 C 0.112 3.888 4 H 0.121 0.879 5 O -0.363 6.363 6 C 0.045 3.955 7 C -0.144 4.144 8 C -0.132 4.132 9 H 0.109 0.891 10 C 0.535 3.465 11 O -0.543 6.543 12 N -0.609 5.609 13 C 0.100 3.900 14 C -0.151 4.151 15 C 0.174 3.826 16 H 0.078 0.922 17 N -0.585 5.585 18 C 0.160 3.840 19 C -0.261 4.261 20 H 0.071 0.929 21 C 0.004 3.996 22 N -0.905 5.905 23 Si 0.906 3.094 24 H -0.288 1.288 25 H -0.289 1.289 26 H -0.279 1.279 27 C 0.084 3.916 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.033 0.967 40 H 0.001 0.999 41 H 0.044 0.956 42 H 0.253 0.747 43 H 0.072 0.928 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.933 -13.620 -14.459 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.196 4.196 3 C 0.054 3.946 4 H 0.139 0.861 5 O -0.281 6.281 6 C -0.031 4.031 7 C -0.182 4.182 8 C -0.154 4.154 9 H 0.127 0.873 10 C 0.322 3.678 11 O -0.421 6.421 12 N -0.342 5.342 13 C -0.023 4.023 14 C -0.191 4.191 15 C 0.063 3.937 16 H 0.096 0.904 17 N -0.306 5.306 18 C 0.016 3.984 19 C -0.390 4.390 20 H 0.089 0.911 21 C -0.194 4.194 22 N -0.550 5.550 23 Si 0.735 3.265 24 H -0.215 1.215 25 H -0.215 1.215 26 H -0.204 1.204 27 C -0.040 4.040 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.128 0.872 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.051 0.949 40 H 0.019 0.981 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.378 -13.002 -14.785 19.737 hybrid contribution -0.180 0.150 1.162 1.186 sum -1.558 -12.852 -13.623 18.793 Atomic orbital electron populations 1.23933 0.95827 1.02295 0.98335 1.23273 0.96473 0.98265 1.01631 1.21899 0.92260 0.96864 0.83543 0.86126 1.88978 1.21320 1.84824 1.33005 1.23614 0.86590 0.98268 0.94666 1.23217 0.94829 1.03322 0.96826 1.22626 0.96858 0.98101 0.97804 0.87255 1.19792 0.81314 0.86725 0.79929 1.90674 1.31948 1.51244 1.68210 1.48415 1.35388 1.25876 1.24513 1.22150 0.89217 0.94760 0.96197 1.23219 1.01180 0.99993 0.94752 1.21391 0.93901 0.88748 0.89669 0.90389 1.43838 1.43353 1.23819 1.19556 1.20810 0.91873 0.94288 0.91430 1.19238 0.99656 1.28208 0.91920 0.91144 1.24970 0.95262 1.01399 0.97792 1.70088 1.08060 1.39987 1.36822 0.86229 0.79455 0.78450 0.82340 1.21461 1.21529 1.20391 1.23049 1.01863 0.87300 0.91800 0.88025 0.88095 0.87247 0.91989 0.88634 0.89815 0.89107 0.91917 0.91846 0.90431 0.90439 0.94915 0.98082 0.93701 0.93666 0.90935 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 14.32 29.02 0.42 -1.18 16 2 C -0.18 -1.81 8.88 -36.03 -0.32 -2.13 16 3 C 0.11 1.37 3.44 -27.31 -0.09 1.28 16 4 H 0.12 1.77 6.11 -51.93 -0.32 1.45 16 5 O -0.36 -4.56 11.18 -35.23 -0.39 -4.95 16 6 C 0.05 0.40 7.67 38.33 0.29 0.70 16 7 C -0.14 -1.34 5.24 -24.61 -0.13 -1.46 16 8 C -0.13 -1.51 2.51 -90.25 -0.23 -1.74 16 9 H 0.11 1.06 7.69 -51.93 -0.40 0.66 16 10 C 0.53 8.27 7.09 -10.98 -0.08 8.19 16 11 O -0.54 -10.38 15.51 5.56 0.09 -10.29 16 12 N -0.61 -9.32 3.33 -170.54 -0.57 -9.89 16 13 C 0.10 1.26 6.10 -3.07 -0.02 1.24 16 14 C -0.15 -2.39 6.50 -24.90 -0.16 -2.55 16 15 C 0.17 3.35 3.53 -65.79 -0.23 3.12 16 16 H 0.08 1.52 7.95 -51.93 -0.41 1.11 16 17 N -0.59 -13.98 2.96 -171.05 -0.51 -14.49 16 18 C 0.16 3.77 7.56 59.85 0.45 4.22 16 19 C -0.26 -6.94 9.63 -15.06 -0.14 -7.08 16 20 H 0.07 1.83 7.86 -52.49 -0.41 1.42 16 21 C 0.00 0.12 5.07 -17.43 -0.09 0.03 16 22 N -0.91 -25.55 10.66 55.49 0.59 -24.96 16 23 Si 0.91 21.39 29.58 -169.99 -5.03 16.37 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.08 1.53 6.47 -2.55 -0.02 1.51 16 28 H 0.10 1.02 7.85 -52.49 -0.41 0.60 16 29 H 0.10 0.76 8.06 -52.49 -0.42 0.34 16 30 H 0.11 0.93 8.06 -52.48 -0.42 0.50 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.08 0.89 7.86 -51.93 -0.41 0.48 16 34 H 0.09 0.63 7.47 -51.93 -0.39 0.24 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.67 6.50 -51.93 -0.34 0.33 16 37 H 0.08 1.30 6.99 -51.93 -0.36 0.94 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.03 0.82 7.39 -51.93 -0.38 0.44 16 40 H 0.00 0.02 6.38 -51.93 -0.33 -0.32 16 41 H 0.04 1.15 7.23 -51.93 -0.38 0.78 16 42 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.07 1.41 8.04 -51.93 -0.42 1.00 16 44 H 0.07 1.32 6.42 -51.93 -0.33 0.98 16 LS Contribution 347.27 15.07 5.23 5.23 Total: -1.00 -31.00 347.27 -7.90 -38.89 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.96 Total: -0.07 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -0.35 Total: 4.15 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -0.48 Total: -49.34 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.31 Total: -15.24 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.00 -7.90 -38.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972372756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.428 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds