Wall clock time and date at job start Tue Mar 31 2020 03:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00212 * 2 1 4 4 H 1.08997 * 109.86812 * 358.99513 * 3 2 1 5 5 O 1.43740 * 110.00176 * 237.90523 * 3 2 1 6 6 C 1.44377 * 106.97658 * 267.01666 * 5 3 2 7 7 C 1.55217 * 103.56731 * 320.01472 * 6 5 3 8 8 C 1.54100 * 109.87893 * 120.00215 * 3 2 1 9 9 H 1.09001 * 110.48719 * 358.73514 * 8 3 2 10 10 C 1.50700 * 110.48657 * 236.22104 * 8 3 2 11 11 O 1.21276 * 119.99864 * 1.84541 * 10 8 3 12 12 N 1.34779 * 120.00202 * 181.84210 * 10 8 3 13 13 C 1.47026 * 125.64616 * 359.95784 * 12 10 8 14 14 C 1.54316 * 107.27118 * 181.09319 * 13 12 10 15 15 C 1.55161 * 102.94110 * 22.19563 * 14 13 12 16 16 H 1.09002 * 111.03323 * 82.58810 * 15 14 13 17 17 N 1.46502 * 111.00264 * 206.42255 * 15 14 13 18 18 C 1.46500 * 120.00032 * 52.19472 * 17 15 14 19 19 C 1.36937 * 119.99895 * 232.19470 * 17 15 14 20 20 H 1.07997 * 120.00237 * 339.56205 * 19 17 15 21 21 C 1.38815 * 119.99793 * 159.27919 * 19 17 15 22 22 N 1.31615 * 119.99985 * 345.41888 * 21 19 17 23 23 Si 1.86803 * 119.99768 * 165.41406 * 21 19 17 24 24 H 1.48498 * 109.47099 * 94.71272 * 23 21 19 25 25 H 1.48499 * 109.46954 * 214.71175 * 23 21 19 26 26 H 1.48503 * 109.46884 * 334.70972 * 23 21 19 27 27 C 1.47419 * 125.65207 * 180.02562 * 12 10 8 28 28 H 1.08000 * 119.99549 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00422 * 179.97438 * 1 2 3 30 30 H 1.08008 * 119.99873 * 180.02562 * 2 1 3 31 31 H 1.08999 * 110.61764 * 78.44830 * 6 5 3 32 32 H 1.09011 * 110.62002 * 201.27913 * 6 5 3 33 33 H 1.09002 * 110.89659 * 278.74556 * 7 6 5 34 34 H 1.09002 * 111.02277 * 155.07022 * 7 6 5 35 35 H 1.08998 * 109.88228 * 300.51306 * 13 12 10 36 36 H 1.09000 * 109.88239 * 61.52101 * 13 12 10 37 37 H 1.08997 * 110.72173 * 263.82976 * 14 13 12 38 38 H 1.09001 * 110.72132 * 140.55564 * 14 13 12 39 39 H 1.08995 * 109.47182 * 264.86625 * 18 17 15 40 40 H 1.08996 * 109.46834 * 24.87141 * 18 17 15 41 41 H 1.09000 * 109.47156 * 144.86844 * 18 17 15 42 42 H 0.97008 * 119.99788 * 179.97438 * 22 21 19 43 43 H 1.09002 * 110.36399 * 36.99880 * 27 12 10 44 44 H 1.08997 * 110.46127 * 274.72680 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3612 2.1384 -0.0180 5 8 2.9309 1.3720 -1.1443 6 6 4.2194 0.8725 -0.7264 7 6 4.3955 1.4654 0.6972 8 6 2.9531 1.3965 1.2550 9 1 2.8267 0.5108 1.8776 10 6 2.6311 2.6419 2.0401 11 8 1.7476 3.3834 1.6654 12 7 3.3248 2.9315 3.1588 13 6 4.4151 2.1234 3.7242 14 6 4.8859 2.8275 5.0142 15 6 3.6575 3.6900 5.4074 16 1 2.9215 3.0976 5.9511 17 7 4.0659 4.8604 6.1881 18 6 5.1136 5.7500 5.6810 19 6 3.4684 5.1228 7.3920 20 1 2.5035 4.6950 7.6206 21 6 4.1056 5.9341 8.3209 22 7 5.3835 6.2163 8.1812 23 14 3.1491 6.6253 9.7689 24 1 3.3216 5.7363 10.9458 25 1 3.6568 7.9822 10.0950 26 1 1.7087 6.7070 9.4171 27 6 3.1151 4.1103 4.0188 28 1 -0.5399 0.9354 0.0004 29 1 -0.5401 -0.9353 -0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 4.2150 -0.2168 -0.6888 32 1 5.0042 1.2290 -1.3936 33 1 4.7447 2.4968 0.6484 34 1 5.0729 0.8547 1.2942 35 1 4.0516 1.1231 3.9594 36 1 5.2379 2.0606 3.0120 37 1 5.7522 3.4583 4.8150 38 1 5.1096 2.0977 5.7923 39 1 6.0744 5.4587 6.1053 40 1 5.1587 5.6757 4.5945 41 1 4.8871 6.7774 5.9659 42 1 5.8287 6.7835 8.8302 43 1 2.0535 4.3493 4.0827 44 1 3.6733 4.9650 3.6366 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972372756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:10 Heat of formation + Delta-G solvation = -46.315372 kcal Electronic energy + Delta-G solvation = -24399.384902 eV Core-core repulsion = 20931.483167 eV Total energy + Delta-G solvation = -3467.901735 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.74819 -40.08804 -38.72052 -36.61165 -34.68168 -33.89576 -32.98091 -31.24514 -29.72209 -29.18309 -28.07839 -25.81811 -24.26061 -23.86596 -22.74830 -21.01382 -20.87743 -20.17675 -18.96589 -18.35861 -17.55321 -17.51162 -16.93750 -16.56375 -16.36562 -15.72874 -15.51481 -14.99317 -14.90392 -14.67646 -14.41865 -14.32890 -13.99810 -13.78464 -13.55568 -13.14934 -12.94696 -12.84151 -12.80343 -12.55368 -12.44492 -12.39177 -12.22483 -12.14707 -12.10058 -11.91102 -11.83559 -11.43695 -10.96446 -10.68866 -10.65091 -10.38327 -9.71038 -8.83067 -7.85715 -5.31995 1.23061 1.45779 1.48448 1.50665 1.57427 1.86652 2.50332 3.03197 3.25939 3.38539 3.44224 3.53747 3.65472 3.91607 3.94497 4.12805 4.17458 4.20902 4.22250 4.23641 4.33193 4.42908 4.53344 4.66423 4.75181 4.78460 4.83963 4.85297 4.90519 4.98871 5.02104 5.03819 5.20177 5.22436 5.29696 5.41820 5.59731 5.62042 5.70181 5.79462 5.90274 6.28810 6.50414 7.03657 7.12225 7.82793 8.25547 9.17524 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031053 B = 0.003303 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.467376 B = 8475.415566 C = 8915.445907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.181 4.181 3 C 0.110 3.890 4 H 0.084 0.916 5 O -0.390 6.390 6 C 0.042 3.958 7 C -0.139 4.139 8 C -0.123 4.123 9 H 0.139 0.861 10 C 0.529 3.471 11 O -0.590 6.590 12 N -0.608 5.608 13 C 0.106 3.894 14 C -0.141 4.141 15 C 0.166 3.834 16 H 0.074 0.926 17 N -0.602 5.602 18 C 0.179 3.821 19 C -0.269 4.269 20 H 0.071 0.929 21 C -0.047 4.047 22 N -0.933 5.933 23 Si 0.966 3.034 24 H -0.283 1.283 25 H -0.294 1.294 26 H -0.274 1.274 27 C 0.096 3.904 28 H 0.085 0.915 29 H 0.125 0.875 30 H 0.136 0.864 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.127 0.873 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.013 0.987 40 H 0.027 0.973 41 H 0.013 0.987 42 H 0.249 0.751 43 H 0.050 0.950 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.271 -16.670 -15.124 22.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.199 4.199 3 C 0.052 3.948 4 H 0.101 0.899 5 O -0.309 6.309 6 C -0.034 4.034 7 C -0.177 4.177 8 C -0.144 4.144 9 H 0.156 0.844 10 C 0.319 3.681 11 O -0.471 6.471 12 N -0.340 5.340 13 C -0.016 4.016 14 C -0.181 4.181 15 C 0.057 3.943 16 H 0.092 0.908 17 N -0.323 5.323 18 C 0.035 3.965 19 C -0.399 4.399 20 H 0.088 0.912 21 C -0.243 4.243 22 N -0.579 5.579 23 Si 0.794 3.206 24 H -0.210 1.210 25 H -0.220 1.220 26 H -0.199 1.199 27 C -0.030 4.030 28 H 0.104 0.896 29 H 0.143 0.857 30 H 0.154 0.846 31 H 0.106 0.894 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.145 0.855 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.031 0.969 40 H 0.045 0.955 41 H 0.031 0.969 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.712 -16.102 -15.471 22.341 hybrid contribution -0.437 1.107 1.282 1.749 sum -1.149 -14.995 -14.189 20.676 Atomic orbital electron populations 1.24103 0.96027 1.02743 0.97889 1.23333 0.96541 0.98060 1.02003 1.21786 0.92160 0.96863 0.84029 0.89861 1.88949 1.22980 1.85540 1.33476 1.23876 0.85241 0.99784 0.94524 1.23277 0.93698 1.03171 0.97571 1.22660 0.98183 0.96407 0.97131 0.84363 1.20611 0.80300 0.87573 0.79612 1.90660 1.34011 1.53116 1.69295 1.48458 1.36144 1.25171 1.24272 1.22321 0.89259 0.95082 0.94944 1.23057 0.98732 0.99505 0.96790 1.21523 0.95574 0.87895 0.89279 0.90801 1.43986 1.43311 1.25671 1.19379 1.20490 0.90890 0.92500 0.92635 1.19540 0.99780 1.27858 0.92733 0.91152 1.25669 0.96091 1.02145 1.00370 1.70226 1.09243 1.40786 1.37674 0.85281 0.78333 0.77359 0.79590 1.20969 1.22019 1.19881 1.22642 1.00103 0.88323 0.91927 0.89621 0.85704 0.84591 0.89357 0.87386 0.91540 0.85518 0.88512 0.88688 0.91494 0.89465 0.96861 0.95487 0.96856 0.94172 0.93168 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 14.32 67.78 0.97 -2.03 16 2 C -0.18 -3.25 8.88 25.65 0.23 -3.02 16 3 C 0.11 2.55 3.44 30.22 0.10 2.65 16 4 H 0.08 2.55 6.11 -2.39 -0.01 2.53 16 5 O -0.39 -9.20 11.18 -148.98 -1.67 -10.87 16 6 C 0.04 0.59 7.67 72.74 0.56 1.15 16 7 C -0.14 -2.04 5.24 31.97 0.17 -1.87 16 8 C -0.12 -2.45 2.51 -10.55 -0.03 -2.48 16 9 H 0.14 2.00 7.69 -2.39 -0.02 1.98 16 10 C 0.53 15.82 7.09 87.66 0.62 16.44 16 11 O -0.59 -23.21 15.51 -3.02 -0.05 -23.26 16 12 N -0.61 -17.59 3.33 -811.87 -2.70 -20.30 16 13 C 0.11 2.24 6.10 86.73 0.53 2.77 16 14 C -0.14 -4.13 6.50 31.78 0.21 -3.92 16 15 C 0.17 6.33 3.53 46.38 0.16 6.50 16 16 H 0.07 2.86 7.95 -2.39 -0.02 2.84 16 17 N -0.60 -29.12 2.96 -695.07 -2.06 -31.18 16 18 C 0.18 8.63 7.56 127.77 0.97 9.60 16 19 C -0.27 -14.49 9.63 84.03 0.81 -13.68 16 20 H 0.07 3.70 7.86 -2.91 -0.02 3.67 16 21 C -0.05 -2.59 5.07 84.86 0.43 -2.16 16 22 N -0.93 -53.78 10.66 21.65 0.23 -53.55 16 23 Si 0.97 44.53 29.58 68.60 2.03 46.56 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 26 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 27 C 0.10 3.49 6.47 86.85 0.56 4.05 16 28 H 0.09 1.75 7.85 -2.91 -0.02 1.73 16 29 H 0.12 1.56 8.06 -2.91 -0.02 1.54 16 30 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 31 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.07 1.23 7.86 -2.39 -0.02 1.21 16 34 H 0.13 0.97 7.47 -2.39 -0.02 0.95 16 35 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.10 1.51 6.50 -2.39 -0.02 1.49 16 37 H 0.07 2.13 6.99 -2.39 -0.02 2.11 16 38 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.01 0.68 7.39 -2.39 -0.02 0.66 16 40 H 0.03 1.12 6.38 -2.39 -0.02 1.11 16 41 H 0.01 0.69 7.23 -2.39 -0.02 0.67 16 42 H 0.25 13.97 8.31 -92.70 -0.77 13.20 16 43 H 0.05 2.03 8.04 -2.39 -0.02 2.01 16 44 H 0.05 2.11 6.42 -2.39 -0.02 2.09 16 Total: -1.00 -70.79 347.27 3.05 -67.74 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.97 Total: 10.86 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 6.29 Total: 13.99 kcal Atomic # 7 Polarization: -100.49 SS G_CDS: -4.53 Total: -105.02 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -1.71 Total: -34.13 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -70.79 3.05 -67.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972372756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.428 kcal (2) G-P(sol) polarization free energy of solvation -70.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds