Wall clock time and date at job start Tue Mar 31 2020 02:58:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31001 * 1
3 3 C 1.50705 * 119.99531 * 2 1
4 4 H 1.09001 * 109.89429 * 359.48064 * 3 2 1
5 5 O 1.43239 * 109.83140 * 238.54473 * 3 2 1
6 6 C 1.43640 * 109.97118 * 242.20033 * 5 3 2
7 7 C 1.54935 * 105.13995 * 335.57153 * 6 5 3
8 8 C 1.54380 * 109.82742 * 120.41342 * 3 2 1
9 9 H 1.08998 * 110.84964 * 22.68409 * 8 3 2
10 10 C 1.50697 * 110.85004 * 259.05720 * 8 3 2
11 11 O 1.21282 * 120.00064 * 329.59613 * 10 8 3
12 12 N 1.34777 * 120.00060 * 149.58579 * 10 8 3
13 13 C 1.48217 * 119.96920 * 185.46802 * 12 10 8
14 14 C 1.47609 * 110.03907 * 102.55755 * 13 12 10
15 15 C 1.53793 * 111.84349 * 58.42901 * 14 13 12
16 16 N 1.43462 * 107.96323 * 281.54741 * 15 14 13
17 17 C 1.36937 * 118.93741 * 273.62987 * 16 15 14
18 18 H 1.08003 * 120.00092 * 25.44354 * 17 16 15
19 19 C 1.38813 * 119.99898 * 205.43924 * 17 16 15
20 20 N 1.31618 * 120.00134 * 14.42496 * 19 17 16
21 21 Si 1.86806 * 119.99933 * 194.42542 * 19 17 16
22 22 H 1.48501 * 109.47127 * 0.02562 * 21 19 17
23 23 H 1.48496 * 109.47217 * 119.99570 * 21 19 17
24 24 H 1.48494 * 109.47230 * 240.00092 * 21 19 17
25 25 C 1.48856 * 122.12051 * 93.61081 * 16 15 14
26 26 C 1.43620 * 119.96941 * 5.74793 * 12 10 8
27 27 H 1.07994 * 120.00751 * 359.97438 * 1 2 3
28 28 H 1.08008 * 119.99402 * 180.02562 * 1 2 3
29 29 H 1.08001 * 120.00425 * 180.02562 * 2 1 3
30 30 H 1.09004 * 110.30994 * 94.49371 * 6 5 3
31 31 H 1.09007 * 110.30917 * 216.65525 * 6 5 3
32 32 H 1.09005 * 111.12685 * 278.52838 * 7 6 5
33 33 H 1.09004 * 111.16688 * 154.37786 * 7 6 5
34 34 H 1.09005 * 109.32375 * 222.78424 * 13 12 10
35 35 H 1.08994 * 109.32537 * 342.25281 * 13 12 10
36 36 H 1.09005 * 109.09849 * 297.76244 * 14 13 12
37 37 H 1.08991 * 108.84376 * 178.93730 * 14 13 12
38 38 H 1.09003 * 109.76045 * 161.92722 * 15 14 13
39 39 H 1.09004 * 109.76347 * 41.16545 * 15 14 13
40 40 H 0.97003 * 119.99518 * 180.02562 * 20 19 17
41 41 H 1.09004 * 109.47450 * 200.65802 * 25 16 15
42 42 H 1.08999 * 109.48032 * 80.62940 * 25 16 15
43 43 H 1.09005 * 108.87195 * 31.42128 * 26 12 10
44 44 H 1.09000 * 108.87411 * 149.85645 * 26 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0634 1.3052 0.0000
4 1 1.3612 2.1388 -0.0093
5 8 2.9153 1.3745 -1.1494
6 6 4.2889 1.4577 -0.7377
7 6 4.2478 2.0568 0.6905
8 6 2.9619 1.3912 1.2524
9 1 3.1789 0.3970 1.6432
10 6 2.3274 2.2579 2.3093
11 8 1.6057 3.1776 1.9865
12 7 2.5616 2.0109 3.6134
13 6 1.8437 2.7845 4.6541
14 6 0.7533 1.9711 5.2269
15 6 1.2776 0.6622 5.8409
16 7 1.5243 -0.2608 4.7707
17 6 0.4940 -1.0411 4.3180
18 1 -0.5271 -0.7102 4.4378
19 6 0.7620 -2.2574 3.7051
20 7 1.9587 -2.7960 3.8067
21 14 -0.5757 -3.1298 2.7360
22 1 -1.8210 -2.3216 2.7733
23 1 -0.1371 -3.2975 1.3273
24 1 -0.8323 -4.4634 3.3367
25 6 2.8639 -0.3974 4.1363
26 6 3.5109 1.0024 3.9933
27 1 -0.5401 0.9352 0.0004
28 1 -0.5399 -0.9354 0.0004
29 1 1.8501 -0.9353 -0.0004
30 1 4.7390 0.4651 -0.7189
31 1 4.8456 2.1136 -1.4072
32 1 4.1467 3.1417 0.6587
33 1 5.1257 1.7632 1.2660
34 1 2.5424 3.0622 5.4433
35 1 1.4283 3.6886 4.2091
36 1 0.0360 1.7325 4.4416
37 1 0.2514 2.5507 6.0016
38 1 0.5316 0.2488 6.5197
39 1 2.2036 0.8543 6.3828
40 1 2.1460 -3.6458 3.3780
41 1 2.7548 -0.8498 3.1506
42 1 3.4980 -1.0292 4.7583
43 1 4.2946 0.9531 3.2372
44 1 3.9602 1.2821 4.9463
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000981992955.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:58:52
Heat of formation + Delta-G solvation = -25.984584 kcal
Electronic energy + Delta-G solvation = -26251.599640 eV
Core-core repulsion = 22784.579514 eV
Total energy + Delta-G solvation = -3467.020126 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 294.173 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-40.43941 -38.68943 -36.89662 -34.28113 -33.51040 -33.06646 -31.71997 -30.84776
-28.37580 -27.57724 -25.59036 -23.73311 -23.52785 -22.44121 -21.07888 -19.80336
-19.59851 -18.53405 -17.36455 -16.49244 -16.34400 -15.71292 -15.62819 -15.09130
-14.47354 -14.39276 -13.84696 -13.70962 -13.60146 -13.38701 -13.02892 -12.89084
-12.49955 -12.36335 -12.13001 -11.76822 -11.53646 -11.44819 -11.30971 -11.02516
-10.94275 -10.79473 -10.77537 -10.55465 -10.27595 -10.19783 -9.88913 -9.72749
-9.43110 -9.33008 -8.99025 -8.51260 -8.08680 -6.73174 -5.83137 -3.24638
2.58960 2.94933 3.32393 3.41857 3.43850 3.45749 4.14448 4.47084
4.59996 4.78973 4.87967 5.17916 5.24154 5.27647 5.31550 5.40029
5.54163 5.56441 5.63346 5.67366 5.72799 5.76567 5.78931 5.88889
5.99229 6.04251 6.09175 6.15998 6.26683 6.38946 6.41079 6.49667
6.78597 6.87254 7.00793 7.01903 7.08279 7.18958 7.32018 7.43564
7.77822 7.91646 8.40346 8.59325 9.17285 9.84737 10.29842 11.25034
Molecular weight = 294.17amu
Principal moments of inertia in cm(-1)
A = 0.012523 B = 0.008636 C = 0.006317
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2235.362438 B = 3241.378906 C = 4431.199059
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C -0.164 4.164
3 C 0.128 3.872
4 H 0.099 0.901
5 O -0.373 6.373
6 C 0.053 3.947
7 C -0.142 4.142
8 C -0.139 4.139
9 H 0.116 0.884
10 C 0.537 3.463
11 O -0.556 6.556
12 N -0.581 5.581
13 C 0.128 3.872
14 C -0.169 4.169
15 C 0.163 3.837
16 N -0.589 5.589
17 C -0.248 4.248
18 H 0.064 0.936
19 C 0.008 3.992
20 N -0.908 5.908
21 Si 0.891 3.109
22 H -0.277 1.277
23 H -0.287 1.287
24 H -0.292 1.292
25 C 0.164 3.836
26 C 0.077 3.923
27 H 0.096 0.904
28 H 0.098 0.902
29 H 0.111 0.889
30 H 0.063 0.937
31 H 0.085 0.915
32 H 0.082 0.918
33 H 0.088 0.912
34 H 0.061 0.939
35 H 0.077 0.923
36 H 0.068 0.932
37 H 0.055 0.945
38 H 0.046 0.954
39 H 0.033 0.967
40 H 0.252 0.748
41 H 0.077 0.923
42 H 0.042 0.958
43 H 0.064 0.936
44 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.026 8.138 -2.680 10.475
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.182 4.182
3 C 0.070 3.930
4 H 0.117 0.883
5 O -0.293 6.293
6 C -0.024 4.024
7 C -0.180 4.180
8 C -0.161 4.161
9 H 0.134 0.866
10 C 0.325 3.675
11 O -0.435 6.435
12 N -0.311 5.311
13 C 0.007 3.993
14 C -0.210 4.210
15 C 0.034 3.966
16 N -0.311 5.311
17 C -0.377 4.377
18 H 0.081 0.919
19 C -0.190 4.190
20 N -0.554 5.554
21 Si 0.721 3.279
22 H -0.202 1.202
23 H -0.213 1.213
24 H -0.219 1.219
25 C 0.038 3.962
26 C -0.049 4.049
27 H 0.114 0.886
28 H 0.116 0.884
29 H 0.129 0.871
30 H 0.081 0.919
31 H 0.104 0.896
32 H 0.101 0.899
33 H 0.106 0.894
34 H 0.079 0.921
35 H 0.096 0.904
36 H 0.086 0.914
37 H 0.073 0.927
38 H 0.064 0.936
39 H 0.051 0.949
40 H 0.062 0.938
41 H 0.095 0.905
42 H 0.060 0.940
43 H 0.082 0.918
44 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 5.651 8.461 -3.081 10.631
hybrid contribution -0.591 -0.851 -0.109 1.042
sum 5.060 7.610 -3.190 9.679
Atomic orbital electron populations
1.23782 0.95879 1.01750 0.98527 1.23025 0.96208 0.97728 1.01220
1.21726 0.91762 0.96533 0.82969 0.88322 1.88453 1.15763 1.95093
1.29965 1.23346 0.84395 1.00210 0.94426 1.23236 0.96754 1.01401
0.96594 1.22924 0.96068 1.01474 0.95586 0.86615 1.19926 0.80596
0.83839 0.83146 1.90611 1.39383 1.31964 1.81557 1.47331 1.41966
1.36668 1.05158 1.20676 0.94545 0.94612 0.89488 1.21967 0.98757
0.99472 1.00851 1.20284 0.97416 0.88818 0.90079 1.43614 1.07738
1.43340 1.36373 1.19184 0.87628 0.97423 1.33504 0.91862 1.24898
0.96543 0.96011 1.01546 1.70007 1.20616 1.18294 1.46459 0.86392
0.81896 0.79456 0.80158 1.20207 1.21317 1.21881 1.21937 0.85622
0.89216 0.99415 1.22244 0.91114 0.91707 0.99793 0.88560 0.88394
0.87082 0.91901 0.89636 0.89926 0.89355 0.92103 0.90417 0.91354
0.92668 0.93566 0.94864 0.93779 0.90458 0.94009 0.91775 0.91910
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.96 14.32 29.01 0.42 -2.54 16
2 C -0.16 -3.02 9.02 -36.02 -0.32 -3.35 16
3 C 0.13 2.24 3.46 -27.16 -0.09 2.15 16
4 H 0.10 1.88 6.53 -51.93 -0.34 1.54 16
5 O -0.37 -6.15 11.00 -35.23 -0.39 -6.54 16
6 C 0.05 0.67 7.78 38.18 0.30 0.96 16
7 C -0.14 -1.83 6.45 -24.48 -0.16 -1.98 16
8 C -0.14 -2.30 1.90 -89.82 -0.17 -2.47 16
9 H 0.12 2.03 5.19 -51.93 -0.27 1.76 16
10 C 0.54 10.01 6.78 -10.99 -0.07 9.94 16
11 O -0.56 -11.72 15.17 5.56 0.08 -11.64 16
12 N -0.58 -10.20 2.45 -176.40 -0.43 -10.63 16
13 C 0.13 2.10 5.77 -5.70 -0.03 2.07 16
14 C -0.17 -2.99 5.65 -28.92 -0.16 -3.16 16
15 C 0.16 3.18 5.63 -5.24 -0.03 3.15 16
16 N -0.59 -13.59 2.54 -172.00 -0.44 -14.03 16
17 C -0.25 -6.48 9.27 -15.06 -0.14 -6.62 16
18 H 0.06 1.70 7.87 -52.48 -0.41 1.29 16
19 C 0.01 0.21 4.95 -17.43 -0.09 0.12 16
20 N -0.91 -24.69 10.92 55.49 0.61 -24.08 16
21 Si 0.89 21.34 29.58 -169.99 -5.03 16.32 16
22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
25 C 0.16 3.49 5.03 -1.75 -0.01 3.48 16
26 C 0.08 1.28 4.81 -4.58 -0.02 1.26 16
27 H 0.10 1.66 7.85 -52.49 -0.41 1.25 16
28 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16
29 H 0.11 2.08 8.06 -52.49 -0.42 1.66 16
30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
31 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16
32 H 0.08 1.08 8.03 -51.93 -0.42 0.67 16
33 H 0.09 0.93 7.80 -51.93 -0.40 0.53 16
34 H 0.06 0.85 8.05 -51.93 -0.42 0.43 16
35 H 0.08 1.31 7.08 -51.93 -0.37 0.94 16
36 H 0.07 1.44 7.91 -51.93 -0.41 1.03 16
37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16
38 H 0.05 0.93 8.02 -51.93 -0.42 0.52 16
39 H 0.03 0.60 7.59 -51.93 -0.39 0.20 16
40 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16
41 H 0.08 1.84 5.32 -51.93 -0.28 1.56 16
42 H 0.04 0.96 7.99 -51.93 -0.42 0.54 16
43 H 0.06 0.93 6.25 -51.93 -0.32 0.60 16
44 H 0.06 0.94 7.72 -51.93 -0.40 0.54 16
LS Contribution 341.83 15.07 5.15 5.15
Total: -1.00 -29.84 341.83 -7.96 -37.80
By element:
Atomic # 1 Polarization: 11.57 SS G_CDS: -6.93 Total: 4.64 kcal
Atomic # 6 Polarization: 3.60 SS G_CDS: -0.59 Total: 3.01 kcal
Atomic # 7 Polarization: -48.48 SS G_CDS: -0.26 Total: -48.74 kcal
Atomic # 8 Polarization: -17.88 SS G_CDS: -0.30 Total: -18.18 kcal
Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.32 kcal
Total LS contribution 5.15 Total: 5.15 kcal
Total: -29.84 -7.96 -37.80 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981992955.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.820 kcal
(2) G-P(sol) polarization free energy of solvation -29.843 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.023 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.804 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.985 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds