Wall clock time and date at job start Tue Mar 31 2020 02:58:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31001 * 1
3 3 C 1.50705 * 119.99531 * 2 1
4 4 H 1.09001 * 109.89429 * 359.48064 * 3 2 1
5 5 O 1.43239 * 109.83140 * 238.54473 * 3 2 1
6 6 C 1.43640 * 109.97118 * 242.20033 * 5 3 2
7 7 C 1.54935 * 105.13995 * 335.57153 * 6 5 3
8 8 C 1.54380 * 109.82742 * 120.41342 * 3 2 1
9 9 H 1.08998 * 110.84964 * 22.68409 * 8 3 2
10 10 C 1.50697 * 110.85004 * 259.05720 * 8 3 2
11 11 O 1.21282 * 120.00064 * 329.59613 * 10 8 3
12 12 N 1.34777 * 120.00060 * 149.58579 * 10 8 3
13 13 C 1.48217 * 119.96920 * 185.46802 * 12 10 8
14 14 C 1.47609 * 110.03907 * 102.55755 * 13 12 10
15 15 C 1.53793 * 111.84349 * 58.42901 * 14 13 12
16 16 N 1.43462 * 107.96323 * 281.54741 * 15 14 13
17 17 C 1.36937 * 118.93741 * 273.62987 * 16 15 14
18 18 H 1.08003 * 120.00092 * 25.44354 * 17 16 15
19 19 C 1.38813 * 119.99898 * 205.43924 * 17 16 15
20 20 N 1.31618 * 120.00134 * 14.42496 * 19 17 16
21 21 Si 1.86806 * 119.99933 * 194.42542 * 19 17 16
22 22 H 1.48501 * 109.47127 * 0.02562 * 21 19 17
23 23 H 1.48496 * 109.47217 * 119.99570 * 21 19 17
24 24 H 1.48494 * 109.47230 * 240.00092 * 21 19 17
25 25 C 1.48856 * 122.12051 * 93.61081 * 16 15 14
26 26 C 1.43620 * 119.96941 * 5.74793 * 12 10 8
27 27 H 1.07994 * 120.00751 * 359.97438 * 1 2 3
28 28 H 1.08008 * 119.99402 * 180.02562 * 1 2 3
29 29 H 1.08001 * 120.00425 * 180.02562 * 2 1 3
30 30 H 1.09004 * 110.30994 * 94.49371 * 6 5 3
31 31 H 1.09007 * 110.30917 * 216.65525 * 6 5 3
32 32 H 1.09005 * 111.12685 * 278.52838 * 7 6 5
33 33 H 1.09004 * 111.16688 * 154.37786 * 7 6 5
34 34 H 1.09005 * 109.32375 * 222.78424 * 13 12 10
35 35 H 1.08994 * 109.32537 * 342.25281 * 13 12 10
36 36 H 1.09005 * 109.09849 * 297.76244 * 14 13 12
37 37 H 1.08991 * 108.84376 * 178.93730 * 14 13 12
38 38 H 1.09003 * 109.76045 * 161.92722 * 15 14 13
39 39 H 1.09004 * 109.76347 * 41.16545 * 15 14 13
40 40 H 0.97003 * 119.99518 * 180.02562 * 20 19 17
41 41 H 1.09004 * 109.47450 * 200.65802 * 25 16 15
42 42 H 1.08999 * 109.48032 * 80.62940 * 25 16 15
43 43 H 1.09005 * 108.87195 * 31.42128 * 26 12 10
44 44 H 1.09000 * 108.87411 * 149.85645 * 26 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0634 1.3052 0.0000
4 1 1.3612 2.1388 -0.0093
5 8 2.9153 1.3745 -1.1494
6 6 4.2889 1.4577 -0.7377
7 6 4.2478 2.0568 0.6905
8 6 2.9619 1.3912 1.2524
9 1 3.1789 0.3970 1.6432
10 6 2.3274 2.2579 2.3093
11 8 1.6057 3.1776 1.9865
12 7 2.5616 2.0109 3.6134
13 6 1.8437 2.7845 4.6541
14 6 0.7533 1.9711 5.2269
15 6 1.2776 0.6622 5.8409
16 7 1.5243 -0.2608 4.7707
17 6 0.4940 -1.0411 4.3180
18 1 -0.5271 -0.7102 4.4378
19 6 0.7620 -2.2574 3.7051
20 7 1.9587 -2.7960 3.8067
21 14 -0.5757 -3.1298 2.7360
22 1 -1.8210 -2.3216 2.7733
23 1 -0.1371 -3.2975 1.3273
24 1 -0.8323 -4.4634 3.3367
25 6 2.8639 -0.3974 4.1363
26 6 3.5109 1.0024 3.9933
27 1 -0.5401 0.9352 0.0004
28 1 -0.5399 -0.9354 0.0004
29 1 1.8501 -0.9353 -0.0004
30 1 4.7390 0.4651 -0.7189
31 1 4.8456 2.1136 -1.4072
32 1 4.1467 3.1417 0.6587
33 1 5.1257 1.7632 1.2660
34 1 2.5424 3.0622 5.4433
35 1 1.4283 3.6886 4.2091
36 1 0.0360 1.7325 4.4416
37 1 0.2514 2.5507 6.0016
38 1 0.5316 0.2488 6.5197
39 1 2.2036 0.8543 6.3828
40 1 2.1460 -3.6458 3.3780
41 1 2.7548 -0.8498 3.1506
42 1 3.4980 -1.0292 4.7583
43 1 4.2946 0.9531 3.2372
44 1 3.9602 1.2821 4.9463
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000981992955.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:58:51
Heat of formation + Delta-G solvation = -43.673232 kcal
Electronic energy + Delta-G solvation = -26252.366677 eV
Core-core repulsion = 22784.579514 eV
Total energy + Delta-G solvation = -3467.787164 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 294.173 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-41.79684 -40.02267 -38.46909 -35.94966 -34.91039 -34.54735 -33.13984 -32.54215
-29.63603 -29.18536 -27.20223 -25.47337 -24.96650 -23.59064 -22.42625 -21.47288
-21.02571 -19.92735 -18.92865 -18.12037 -17.73089 -17.20479 -16.91925 -16.61119
-16.11349 -15.85818 -15.53113 -15.17803 -15.00406 -14.82408 -14.45181 -14.30624
-13.94309 -13.85975 -13.59129 -13.14991 -13.14635 -12.88330 -12.85363 -12.53911
-12.47974 -12.34968 -12.21897 -12.07943 -11.96843 -11.68982 -11.65416 -11.42135
-10.82544 -10.69025 -10.49146 -10.38075 -9.54613 -8.61635 -7.84304 -5.25974
1.13466 1.37682 1.43195 1.49788 1.52600 2.11777 2.50316 2.93841
3.29903 3.41591 3.49723 3.60052 3.74944 3.95490 4.05044 4.14961
4.20179 4.22048 4.25498 4.33893 4.42023 4.51517 4.59273 4.66780
4.69174 4.78181 4.80180 4.88316 4.92711 4.94360 5.04437 5.06767
5.24905 5.30719 5.48727 5.54034 5.63482 5.67244 5.74908 5.81167
5.94404 6.41866 6.50647 7.17086 7.21614 7.98333 8.35507 9.20047
Molecular weight = 294.17amu
Principal moments of inertia in cm(-1)
A = 0.012523 B = 0.008636 C = 0.006317
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2235.362438 B = 3241.378906 C = 4431.199059
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.170 4.170
3 C 0.133 3.867
4 H 0.079 0.921
5 O -0.389 6.389
6 C 0.046 3.954
7 C -0.130 4.130
8 C -0.138 4.138
9 H 0.106 0.894
10 C 0.531 3.469
11 O -0.586 6.586
12 N -0.582 5.582
13 C 0.125 3.875
14 C -0.154 4.154
15 C 0.158 3.842
16 N -0.603 5.603
17 C -0.250 4.250
18 H 0.048 0.952
19 C -0.029 4.029
20 N -0.925 5.925
21 Si 0.932 3.068
22 H -0.278 1.278
23 H -0.285 1.285
24 H -0.295 1.295
25 C 0.171 3.829
26 C 0.087 3.913
27 H 0.102 0.898
28 H 0.097 0.903
29 H 0.105 0.895
30 H 0.075 0.925
31 H 0.114 0.886
32 H 0.082 0.918
33 H 0.119 0.881
34 H 0.099 0.901
35 H 0.073 0.927
36 H 0.025 0.975
37 H 0.085 0.915
38 H 0.034 0.966
39 H 0.059 0.941
40 H 0.248 0.752
41 H 0.047 0.953
42 H 0.023 0.977
43 H 0.091 0.909
44 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.860 9.475 -2.225 12.510
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.188 4.188
3 C 0.075 3.925
4 H 0.097 0.903
5 O -0.309 6.309
6 C -0.030 4.030
7 C -0.168 4.168
8 C -0.160 4.160
9 H 0.124 0.876
10 C 0.320 3.680
11 O -0.467 6.467
12 N -0.311 5.311
13 C 0.004 3.996
14 C -0.195 4.195
15 C 0.031 3.969
16 N -0.325 5.325
17 C -0.381 4.381
18 H 0.066 0.934
19 C -0.225 4.225
20 N -0.572 5.572
21 Si 0.762 3.238
22 H -0.203 1.203
23 H -0.211 1.211
24 H -0.222 1.222
25 C 0.045 3.955
26 C -0.038 4.038
27 H 0.120 0.880
28 H 0.115 0.885
29 H 0.123 0.877
30 H 0.093 0.907
31 H 0.132 0.868
32 H 0.101 0.899
33 H 0.137 0.863
34 H 0.117 0.883
35 H 0.091 0.909
36 H 0.044 0.956
37 H 0.103 0.897
38 H 0.053 0.947
39 H 0.078 0.922
40 H 0.058 0.942
41 H 0.065 0.935
42 H 0.041 0.959
43 H 0.109 0.891
44 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges 7.496 9.814 -2.606 12.622
hybrid contribution -1.190 -1.256 -0.209 1.743
sum 6.306 8.559 -2.815 10.998
Atomic orbital electron populations
1.23869 0.96065 1.01997 0.98885 1.23165 0.96441 0.98218 1.01022
1.21510 0.91992 0.94921 0.84077 0.90273 1.88429 1.17614 1.95127
1.29717 1.23662 0.82663 1.01700 0.94949 1.23278 0.95756 1.01082
0.96692 1.22880 0.97628 1.00900 0.94569 0.87597 1.20296 0.80182
0.83615 0.83889 1.90594 1.40666 1.33395 1.82086 1.47462 1.41963
1.36537 1.05147 1.20813 0.94917 0.93834 0.90041 1.21771 0.98477
0.99031 1.00254 1.20438 0.98387 0.88721 0.89351 1.43836 1.07652
1.43502 1.37541 1.19254 0.88005 0.97706 1.33117 0.93440 1.25306
0.97871 0.96708 1.02651 1.70104 1.21460 1.18346 1.47259 0.85750
0.80397 0.78375 0.79311 1.20287 1.21115 1.22240 1.21755 0.84710
0.91886 0.97140 1.22118 0.90812 0.88571 1.02315 0.88001 0.88514
0.87657 0.90706 0.86779 0.89899 0.86261 0.88283 0.90899 0.95587
0.89674 0.94713 0.92246 0.94238 0.93488 0.95882 0.89064 0.89023
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -6.41 14.32 67.78 0.97 -5.43 16
2 C -0.17 -6.41 9.02 25.65 0.23 -6.18 16
3 C 0.13 4.66 3.46 30.32 0.10 4.76 16
4 H 0.08 3.08 6.53 -2.39 -0.02 3.07 16
5 O -0.39 -12.40 11.00 -148.98 -1.64 -14.04 16
6 C 0.05 1.03 7.78 72.64 0.56 1.60 16
7 C -0.13 -2.97 6.45 32.05 0.21 -2.76 16
8 C -0.14 -4.41 1.90 -10.28 -0.02 -4.43 16
9 H 0.11 3.62 5.19 -2.39 -0.01 3.60 16
10 C 0.53 19.18 6.78 87.66 0.59 19.77 16
11 O -0.59 -24.47 15.17 -3.04 -0.05 -24.52 16
12 N -0.58 -19.11 2.45 -830.41 -2.03 -21.14 16
13 C 0.12 3.74 5.77 84.36 0.49 4.23 16
14 C -0.15 -5.20 5.65 29.18 0.16 -5.03 16
15 C 0.16 5.95 5.63 87.21 0.49 6.44 16
16 N -0.60 -27.62 2.54 -698.08 -1.77 -29.39 16
17 C -0.25 -13.28 9.27 84.03 0.78 -12.50 16
18 H 0.05 2.63 7.87 -2.91 -0.02 2.60 16
19 C -0.03 -1.58 4.95 84.86 0.42 -1.16 16
20 N -0.92 -50.92 10.92 21.65 0.24 -50.68 16
21 Si 0.93 44.58 29.58 68.60 2.03 46.61 16
22 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16
23 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16
24 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16
25 C 0.17 7.12 5.03 86.56 0.44 7.55 16
26 C 0.09 2.63 4.81 87.55 0.42 3.05 16
27 H 0.10 3.63 7.85 -2.91 -0.02 3.61 16
28 H 0.10 3.57 8.06 -2.91 -0.02 3.55 16
29 H 0.11 4.04 8.06 -2.91 -0.02 4.02 16
30 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16
31 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16
32 H 0.08 1.92 8.03 -2.38 -0.02 1.91 16
33 H 0.12 1.98 7.80 -2.38 -0.02 1.96 16
34 H 0.10 2.27 8.05 -2.38 -0.02 2.25 16
35 H 0.07 2.30 7.08 -2.39 -0.02 2.29 16
36 H 0.03 1.08 7.91 -2.38 -0.02 1.06 16
37 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16
38 H 0.03 1.37 8.02 -2.39 -0.02 1.35 16
39 H 0.06 1.93 7.59 -2.38 -0.02 1.91 16
40 H 0.25 13.42 8.31 -92.71 -0.77 12.65 16
41 H 0.05 2.24 5.32 -2.38 -0.01 2.23 16
42 H 0.02 1.05 7.99 -2.39 -0.02 1.03 16
43 H 0.09 2.30 6.25 -2.38 -0.01 2.29 16
44 H 0.09 2.32 7.72 -2.39 -0.02 2.30 16
Total: -1.00 -66.10 341.83 3.60 -62.50
By element:
Atomic # 1 Polarization: 19.78 SS G_CDS: 0.98 Total: 20.75 kcal
Atomic # 6 Polarization: 4.06 SS G_CDS: 5.85 Total: 9.91 kcal
Atomic # 7 Polarization: -97.65 SS G_CDS: -3.57 Total: -101.22 kcal
Atomic # 8 Polarization: -36.87 SS G_CDS: -1.68 Total: -38.56 kcal
Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal
Total: -66.10 3.60 -62.50 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981992955.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.827 kcal
(2) G-P(sol) polarization free energy of solvation -66.105 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.278 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.500 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.673 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds