Wall clock time and date at job start Tue Mar 31 2020 03:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.00263 * 2 1 4 4 C 1.54327 * 109.88612 * 121.10484 * 2 1 3 5 5 C 1.55154 * 102.94290 * 97.22041 * 4 2 1 6 6 H 1.09002 * 111.00378 * 277.42832 * 5 4 2 7 7 N 1.46500 * 111.00420 * 153.61252 * 5 4 2 8 8 C 1.36934 * 119.99978 * 158.17667 * 7 5 4 9 9 H 1.07995 * 120.00129 * 0.02562 * 8 7 5 10 10 C 1.38818 * 119.99952 * 180.02562 * 8 7 5 11 11 N 1.31613 * 119.99801 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99883 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46950 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.46843 * 120.00152 * 12 10 8 15 15 H 1.48496 * 109.47050 * 240.00027 * 12 10 8 16 16 C 1.54915 * 101.58176 * 35.50368 * 5 4 2 17 17 N 1.47029 * 109.87916 * 238.90938 * 2 1 3 18 18 C 1.34773 * 125.64802 * 59.57365 * 17 2 1 19 19 O 1.21288 * 120.00122 * 359.97438 * 18 17 2 20 20 C 1.50701 * 120.00203 * 180.02562 * 18 17 2 21 21 C 1.50696 * 109.47254 * 179.97438 * 20 18 17 22 22 C 1.29988 * 118.74992 * 94.72828 * 21 20 18 23 23 C 1.50228 * 122.86833 * 180.14641 * 22 21 20 24 24 O 1.42901 * 110.19078 * 344.88134 * 23 22 21 25 25 C 1.43303 * 113.01751 * 49.97256 * 24 23 22 26 26 C 1.50394 * 118.74370 * 274.99924 * 21 20 18 27 27 H 1.09002 * 109.46599 * 298.89665 * 1 2 3 28 28 H 1.08996 * 109.47347 * 58.89449 * 1 2 3 29 29 H 1.08997 * 109.47232 * 178.90284 * 1 2 3 30 30 H 1.09004 * 110.71649 * 338.85624 * 4 2 1 31 31 H 1.08997 * 110.87056 * 215.65546 * 4 2 1 32 32 H 0.97001 * 120.00052 * 338.18451 * 7 5 4 33 33 H 0.97006 * 120.00093 * 179.97438 * 11 10 8 34 34 H 1.08995 * 110.36257 * 81.82999 * 16 5 4 35 35 H 1.08997 * 110.36405 * 204.14718 * 16 5 4 36 36 H 1.09000 * 109.46797 * 299.99397 * 20 18 17 37 37 H 1.08997 * 109.47378 * 59.99494 * 20 18 17 38 38 H 1.07995 * 118.55871 * 0.39065 * 22 21 20 39 39 H 1.09006 * 109.49706 * 224.55345 * 23 22 21 40 40 H 1.08997 * 109.05226 * 104.92874 * 23 22 21 41 41 H 1.09003 * 109.68005 * 172.07419 * 25 24 23 42 42 H 1.09004 * 109.70950 * 51.53867 * 25 24 23 43 43 H 1.09003 * 109.44926 * 283.41171 * 26 21 20 44 44 H 1.08998 * 109.45209 * 43.35534 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7497 1.2426 5 6 2.3518 -2.1696 0.6921 6 1 1.4451 -2.7737 0.6601 7 7 3.3931 -2.8318 1.4817 8 6 3.4963 -4.1972 1.4707 9 1 2.8104 -4.7859 0.8798 10 6 4.4827 -4.8247 2.2194 11 7 5.3182 -4.1073 2.9400 12 14 4.6239 -6.6873 2.2039 13 1 3.5734 -7.2560 1.3217 14 1 5.9632 -7.0778 1.6951 15 1 4.4471 -7.2086 3.5831 16 6 2.8567 -1.8497 -0.7371 17 7 2.0299 -0.7140 -1.1841 18 6 1.7754 -0.3841 -2.4658 19 8 1.0787 0.5761 -2.7180 20 6 2.3555 -1.2091 -3.5856 21 6 1.9228 -0.6338 -4.9096 22 6 2.7122 0.2021 -5.5160 23 6 2.3722 0.8330 -6.8363 24 8 1.2889 0.1340 -7.4526 25 6 0.1746 -0.0603 -6.5728 26 6 0.5913 -1.0440 -5.4758 27 1 -0.3632 0.4966 0.8998 28 1 -0.3634 0.5309 -0.8799 29 1 -0.3633 -1.0274 -0.0197 30 1 1.2918 -0.7893 2.0200 31 1 2.9652 -0.2846 1.6209 32 1 4.0094 -2.3030 2.0123 33 1 6.0073 -4.5457 3.4634 34 1 3.9090 -1.5667 -0.7131 35 1 2.7087 -2.7079 -1.3926 36 1 3.4435 -1.1950 -3.5212 37 1 1.9998 -2.2360 -3.5024 38 1 3.6553 0.4508 -5.0523 39 1 3.2433 0.7990 -7.4908 40 1 2.0849 1.8714 -6.6710 41 1 -0.6675 -0.4686 -7.1316 42 1 -0.1096 0.8914 -6.1238 43 1 0.6693 -2.0461 -5.8975 44 1 -0.1567 -1.0412 -4.6830 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989406430.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:28 Heat of formation + Delta-G solvation = -56.398153 kcal Electronic energy + Delta-G solvation = -24016.126572 eV Core-core repulsion = 20547.787615 eV Total energy + Delta-G solvation = -3468.338958 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.23522 -39.31716 -37.47443 -34.77574 -34.20080 -31.91979 -31.35804 -31.22860 -28.97006 -28.31083 -25.49611 -24.66088 -23.98264 -23.69580 -21.76607 -20.19307 -18.80709 -18.12228 -17.40350 -16.87217 -16.56771 -16.25828 -15.59003 -15.36199 -14.99450 -14.78893 -14.27829 -13.70975 -13.52575 -13.35345 -13.14341 -13.09784 -12.94765 -12.69682 -12.51402 -12.42156 -12.14816 -11.86632 -11.78443 -11.35518 -11.23759 -11.02868 -10.82545 -10.70330 -10.68011 -10.29432 -10.03781 -9.85195 -9.80696 -9.68476 -9.09257 -8.90205 -8.38496 -7.15383 -5.91118 -3.22292 1.96808 2.80460 3.26034 3.35174 3.41612 3.43404 3.71781 4.45951 4.53753 4.57490 4.70886 4.83923 5.07282 5.09316 5.12170 5.18582 5.23274 5.28032 5.37353 5.38552 5.43155 5.51819 5.55424 5.58120 5.62358 5.70012 5.79453 5.80882 5.81893 6.06056 6.08041 6.17255 6.24523 6.35098 6.40154 6.48523 6.62187 6.71663 6.79714 6.96706 7.57965 7.78798 8.26014 8.36221 9.38443 9.91816 10.26622 11.30834 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019226 B = 0.003418 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.975192 B = 8189.369768 C = 9063.546083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 H 0.068 0.932 4 C -0.138 4.138 5 C 0.174 3.826 6 H 0.066 0.934 7 N -0.712 5.712 8 C -0.250 4.250 9 H 0.073 0.927 10 C -0.008 4.008 11 N -0.929 5.929 12 Si 0.908 3.092 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.290 1.290 16 C 0.071 3.929 17 N -0.610 5.610 18 C 0.530 3.470 19 O -0.547 6.547 20 C -0.106 4.106 21 C -0.083 4.083 22 C -0.196 4.196 23 C 0.095 3.905 24 O -0.382 6.382 25 C 0.061 3.939 26 C -0.116 4.116 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.387 0.613 33 H 0.257 0.743 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.101 0.899 40 H 0.061 0.939 41 H 0.095 0.905 42 H 0.057 0.943 43 H 0.081 0.919 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.865 8.713 -14.144 18.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 H 0.086 0.914 4 C -0.176 4.176 5 C 0.062 3.938 6 H 0.084 0.916 7 N -0.352 5.352 8 C -0.381 4.381 9 H 0.091 0.909 10 C -0.205 4.205 11 N -0.576 5.576 12 Si 0.739 3.261 13 H -0.204 1.204 14 H -0.217 1.217 15 H -0.217 1.217 16 C -0.055 4.055 17 N -0.344 5.344 18 C 0.319 3.681 19 O -0.426 6.426 20 C -0.146 4.146 21 C -0.084 4.084 22 C -0.214 4.214 23 C 0.018 3.982 24 O -0.301 6.301 25 C -0.016 4.016 26 C -0.153 4.153 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.222 0.778 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.133 0.867 39 H 0.118 0.882 40 H 0.079 0.921 41 H 0.114 0.886 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.241 8.965 -14.525 18.954 hybrid contribution 0.622 -0.882 0.683 1.277 sum -7.619 8.083 -13.842 17.747 Atomic orbital electron populations 1.22121 0.95075 1.02238 1.02355 1.21476 0.94342 0.95868 0.84767 0.91373 1.23004 1.01724 0.97044 0.95874 1.21269 0.92765 0.91250 0.88550 0.91637 1.42335 1.35264 1.04275 1.53347 1.19287 1.12388 0.82653 1.23733 0.90898 1.24777 0.98123 0.98063 0.99496 1.69666 1.20581 1.34215 1.33125 0.86116 0.77465 0.85216 0.77345 1.20431 1.21725 1.21738 1.23522 0.94988 0.87077 0.99889 1.48668 1.50342 1.30834 1.04554 1.20123 0.80756 0.84930 0.82317 1.90649 1.39309 1.29150 1.83484 1.20791 1.02440 1.00375 0.90963 1.20415 0.95843 0.97804 0.94297 1.22659 1.00914 0.99565 0.98312 1.21365 0.90056 0.94664 0.92092 1.88087 1.26250 1.77840 1.37911 1.22625 0.88924 0.98561 0.91466 1.21033 0.95354 1.00145 0.98764 0.92018 0.91540 0.92492 0.90169 0.90593 0.77840 0.93334 0.91213 0.91294 0.88303 0.88173 0.86745 0.88153 0.92108 0.88639 0.92490 0.90061 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.05 37.16 0.34 -1.81 16 2 C 0.14 2.02 3.49 -66.95 -0.23 1.79 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.14 -2.10 6.13 -24.90 -0.15 -2.25 16 5 C 0.17 3.14 3.70 -65.78 -0.24 2.90 16 6 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 7 N -0.71 -16.38 5.26 -51.35 -0.27 -16.65 16 8 C -0.25 -6.45 9.97 -15.06 -0.15 -6.60 16 9 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 10 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 11 N -0.93 -26.64 13.06 55.49 0.72 -25.91 16 12 Si 0.91 21.29 29.55 -169.99 -5.02 16.27 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 C 0.07 1.15 6.39 -2.53 -0.02 1.14 16 17 N -0.61 -9.23 3.08 -163.01 -0.50 -9.74 16 18 C 0.53 8.01 7.62 -10.99 -0.08 7.93 16 19 O -0.55 -9.55 14.94 5.55 0.08 -9.47 16 20 C -0.11 -1.31 4.77 -29.04 -0.14 -1.45 16 21 C -0.08 -1.01 4.40 -100.93 -0.44 -1.46 16 22 C -0.20 -2.26 9.54 -35.97 -0.34 -2.60 16 23 C 0.09 0.97 7.04 35.78 0.25 1.22 16 24 O -0.38 -4.50 10.85 -35.23 -0.38 -4.88 16 25 C 0.06 0.63 6.89 37.22 0.26 0.89 16 26 C -0.12 -1.27 6.09 -27.97 -0.17 -1.44 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.98 6.77 -51.93 -0.35 0.63 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.15 7.83 -51.93 -0.41 0.74 16 31 H 0.08 1.18 7.99 -51.93 -0.42 0.76 16 32 H 0.39 9.52 7.73 -40.82 -0.32 9.20 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.07 7.48 -51.93 -0.39 0.68 16 36 H 0.10 1.14 7.87 -51.93 -0.41 0.73 16 37 H 0.10 1.13 7.83 -51.93 -0.41 0.73 16 38 H 0.11 1.22 7.84 -52.49 -0.41 0.81 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 355.63 15.07 5.36 5.36 Total: -1.00 -30.09 355.63 -8.54 -38.63 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -7.30 Total: 8.45 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -1.23 Total: -2.05 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -0.05 Total: -52.30 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.30 Total: -14.35 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.09 -8.54 -38.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989406430.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.771 kcal (2) G-P(sol) polarization free energy of solvation -30.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds