Wall clock time and date at job start Tue Mar 31 2020 03:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.00263 * 2 1 4 4 C 1.54327 * 109.88612 * 121.10484 * 2 1 3 5 5 C 1.55154 * 102.94290 * 97.22041 * 4 2 1 6 6 H 1.09002 * 111.00378 * 277.42832 * 5 4 2 7 7 N 1.46500 * 111.00420 * 153.61252 * 5 4 2 8 8 C 1.36934 * 119.99978 * 158.17667 * 7 5 4 9 9 H 1.07995 * 120.00129 * 0.02562 * 8 7 5 10 10 C 1.38818 * 119.99952 * 180.02562 * 8 7 5 11 11 N 1.31613 * 119.99801 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99883 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46950 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.46843 * 120.00152 * 12 10 8 15 15 H 1.48496 * 109.47050 * 240.00027 * 12 10 8 16 16 C 1.54915 * 101.58176 * 35.50368 * 5 4 2 17 17 N 1.47029 * 109.87916 * 238.90938 * 2 1 3 18 18 C 1.34773 * 125.64802 * 59.57365 * 17 2 1 19 19 O 1.21288 * 120.00122 * 359.97438 * 18 17 2 20 20 C 1.50701 * 120.00203 * 180.02562 * 18 17 2 21 21 C 1.50696 * 109.47254 * 179.97438 * 20 18 17 22 22 C 1.29988 * 118.74992 * 94.72828 * 21 20 18 23 23 C 1.50228 * 122.86833 * 180.14641 * 22 21 20 24 24 O 1.42901 * 110.19078 * 344.88134 * 23 22 21 25 25 C 1.43303 * 113.01751 * 49.97256 * 24 23 22 26 26 C 1.50394 * 118.74370 * 274.99924 * 21 20 18 27 27 H 1.09002 * 109.46599 * 298.89665 * 1 2 3 28 28 H 1.08996 * 109.47347 * 58.89449 * 1 2 3 29 29 H 1.08997 * 109.47232 * 178.90284 * 1 2 3 30 30 H 1.09004 * 110.71649 * 338.85624 * 4 2 1 31 31 H 1.08997 * 110.87056 * 215.65546 * 4 2 1 32 32 H 0.97001 * 120.00052 * 338.18451 * 7 5 4 33 33 H 0.97006 * 120.00093 * 179.97438 * 11 10 8 34 34 H 1.08995 * 110.36257 * 81.82999 * 16 5 4 35 35 H 1.08997 * 110.36405 * 204.14718 * 16 5 4 36 36 H 1.09000 * 109.46797 * 299.99397 * 20 18 17 37 37 H 1.08997 * 109.47378 * 59.99494 * 20 18 17 38 38 H 1.07995 * 118.55871 * 0.39065 * 22 21 20 39 39 H 1.09006 * 109.49706 * 224.55345 * 23 22 21 40 40 H 1.08997 * 109.05226 * 104.92874 * 23 22 21 41 41 H 1.09003 * 109.68005 * 172.07419 * 25 24 23 42 42 H 1.09004 * 109.70950 * 51.53867 * 25 24 23 43 43 H 1.09003 * 109.44926 * 283.41171 * 26 21 20 44 44 H 1.08998 * 109.45209 * 43.35534 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7497 1.2426 5 6 2.3518 -2.1696 0.6921 6 1 1.4451 -2.7737 0.6601 7 7 3.3931 -2.8318 1.4817 8 6 3.4963 -4.1972 1.4707 9 1 2.8104 -4.7859 0.8798 10 6 4.4827 -4.8247 2.2194 11 7 5.3182 -4.1073 2.9400 12 14 4.6239 -6.6873 2.2039 13 1 3.5734 -7.2560 1.3217 14 1 5.9632 -7.0778 1.6951 15 1 4.4471 -7.2086 3.5831 16 6 2.8567 -1.8497 -0.7371 17 7 2.0299 -0.7140 -1.1841 18 6 1.7754 -0.3841 -2.4658 19 8 1.0787 0.5761 -2.7180 20 6 2.3555 -1.2091 -3.5856 21 6 1.9228 -0.6338 -4.9096 22 6 2.7122 0.2021 -5.5160 23 6 2.3722 0.8330 -6.8363 24 8 1.2889 0.1340 -7.4526 25 6 0.1746 -0.0603 -6.5728 26 6 0.5913 -1.0440 -5.4758 27 1 -0.3632 0.4966 0.8998 28 1 -0.3634 0.5309 -0.8799 29 1 -0.3633 -1.0274 -0.0197 30 1 1.2918 -0.7893 2.0200 31 1 2.9652 -0.2846 1.6209 32 1 4.0094 -2.3030 2.0123 33 1 6.0073 -4.5457 3.4634 34 1 3.9090 -1.5667 -0.7131 35 1 2.7087 -2.7079 -1.3926 36 1 3.4435 -1.1950 -3.5212 37 1 1.9998 -2.2360 -3.5024 38 1 3.6553 0.4508 -5.0523 39 1 3.2433 0.7990 -7.4908 40 1 2.0849 1.8714 -6.6710 41 1 -0.6675 -0.4686 -7.1316 42 1 -0.1096 0.8914 -6.1238 43 1 0.6693 -2.0461 -5.8975 44 1 -0.1567 -1.0412 -4.6830 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989406430.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:28 Heat of formation + Delta-G solvation = -74.655892 kcal Electronic energy + Delta-G solvation = -24016.918287 eV Core-core repulsion = 20547.787615 eV Total energy + Delta-G solvation = -3469.130673 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.39951 -40.26333 -38.76059 -36.02636 -35.63897 -33.32014 -32.91790 -32.04321 -30.11031 -29.75668 -26.73970 -25.91184 -25.37401 -24.67211 -23.03931 -21.58656 -20.02637 -19.28302 -18.99234 -18.10443 -17.47063 -17.18303 -16.93182 -16.52136 -16.30479 -15.93493 -15.65491 -15.17586 -14.73511 -14.60582 -14.54014 -14.34452 -13.96761 -13.84652 -13.65981 -13.35496 -13.24534 -13.06132 -12.98512 -12.86558 -12.80811 -12.27757 -12.22275 -12.12297 -12.02033 -11.71250 -11.52857 -11.45105 -11.07845 -10.85087 -10.62486 -9.81097 -9.67131 -9.04969 -7.94572 -5.24453 1.05486 1.50535 1.51896 1.60731 1.61279 2.06978 2.57579 2.92808 3.37614 3.44772 3.64248 3.72674 3.85327 3.94056 3.98191 4.02993 4.11943 4.25892 4.33757 4.39171 4.43095 4.46730 4.51679 4.51754 4.56181 4.67858 4.71956 4.76408 4.79076 4.89241 4.91631 4.98861 5.02720 5.14540 5.24899 5.33040 5.44947 5.50174 5.55945 5.84611 6.14853 6.26631 6.55328 7.15370 7.34510 8.05755 8.29646 9.28464 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019226 B = 0.003418 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.975192 B = 8189.369768 C = 9063.546083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.138 3.862 3 H 0.069 0.931 4 C -0.126 4.126 5 C 0.167 3.833 6 H 0.065 0.935 7 N -0.724 5.724 8 C -0.241 4.241 9 H 0.081 0.919 10 C -0.070 4.070 11 N -0.967 5.967 12 Si 0.968 3.032 13 H -0.264 1.264 14 H -0.295 1.295 15 H -0.297 1.297 16 C 0.086 3.914 17 N -0.610 5.610 18 C 0.529 3.471 19 O -0.571 6.571 20 C -0.101 4.101 21 C -0.103 4.103 22 C -0.197 4.197 23 C 0.090 3.910 24 O -0.396 6.396 25 C 0.059 3.941 26 C -0.115 4.115 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.377 0.623 33 H 0.251 0.749 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.066 0.934 41 H 0.116 0.884 42 H 0.050 0.950 43 H 0.090 0.910 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.718 8.509 -15.330 19.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.034 3.966 3 H 0.087 0.913 4 C -0.165 4.165 5 C 0.057 3.943 6 H 0.083 0.917 7 N -0.363 5.363 8 C -0.373 4.373 9 H 0.099 0.901 10 C -0.262 4.262 11 N -0.617 5.617 12 Si 0.798 3.202 13 H -0.188 1.188 14 H -0.223 1.223 15 H -0.224 1.224 16 C -0.040 4.040 17 N -0.344 5.344 18 C 0.319 3.681 19 O -0.451 6.451 20 C -0.141 4.141 21 C -0.104 4.104 22 C -0.216 4.216 23 C 0.014 3.986 24 O -0.315 6.315 25 C -0.017 4.017 26 C -0.152 4.152 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.209 0.791 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.084 0.916 41 H 0.134 0.866 42 H 0.068 0.932 43 H 0.109 0.891 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.139 8.772 -15.751 20.213 hybrid contribution 0.832 -0.720 1.012 1.495 sum -8.307 8.053 -14.739 18.737 Atomic orbital electron populations 1.22042 0.93957 1.02157 1.02750 1.21524 0.95170 0.95686 0.84170 0.91292 1.22907 1.02001 0.95092 0.96469 1.21422 0.91384 0.92362 0.89154 0.91720 1.42454 1.36165 1.03574 1.54077 1.19657 1.11393 0.84065 1.22175 0.90146 1.25504 0.98619 1.01879 1.00219 1.69806 1.21592 1.35567 1.34710 0.85153 0.77319 0.80795 0.76957 1.18839 1.22280 1.22439 1.23164 0.94418 0.87741 0.98691 1.48685 1.50204 1.30499 1.04969 1.20590 0.80198 0.84756 0.82564 1.90639 1.40407 1.30310 1.83734 1.20803 1.02778 1.00410 0.90086 1.20579 0.96693 0.98665 0.94416 1.22900 1.00985 0.98925 0.98768 1.21535 0.90497 0.94626 0.91929 1.88069 1.26792 1.78045 1.38553 1.22723 0.89227 0.98239 0.91505 1.21038 0.94622 1.00813 0.98726 0.89992 0.92836 0.92670 0.88957 0.90958 0.79066 0.94024 0.92182 0.90407 0.87435 0.87020 0.86227 0.86170 0.91587 0.86595 0.93197 0.89124 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.05 71.98 0.65 -3.14 16 2 C 0.14 3.81 3.49 45.34 0.16 3.97 16 3 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 4 C -0.13 -3.68 6.13 31.78 0.19 -3.48 16 5 C 0.17 5.84 3.70 46.38 0.17 6.01 16 6 H 0.06 2.29 8.11 -2.39 -0.02 2.27 16 7 N -0.72 -32.95 5.26 -316.37 -1.66 -34.62 16 8 C -0.24 -12.27 9.97 84.04 0.84 -11.43 16 9 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 10 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 11 N -0.97 -56.11 13.06 21.65 0.28 -55.83 16 12 Si 0.97 43.64 29.55 68.60 2.03 45.67 16 13 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 14 H -0.30 -13.44 7.11 99.48 0.71 -12.74 16 15 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 16 C 0.09 2.66 6.39 86.86 0.55 3.21 16 17 N -0.61 -17.62 3.08 -788.05 -2.43 -20.05 16 18 C 0.53 15.31 7.62 87.66 0.67 15.98 16 19 O -0.57 -19.38 14.94 -3.05 -0.05 -19.43 16 20 C -0.10 -2.35 4.77 29.10 0.14 -2.21 16 21 C -0.10 -2.37 4.40 -15.54 -0.07 -2.43 16 22 C -0.20 -4.25 9.54 26.54 0.25 -4.00 16 23 C 0.09 1.70 7.04 71.09 0.50 2.21 16 24 O -0.40 -8.68 10.85 -148.98 -1.62 -10.29 16 25 C 0.06 1.15 6.89 72.02 0.50 1.65 16 26 C -0.11 -2.36 6.09 29.79 0.18 -2.18 16 27 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 1.50 6.77 -2.39 -0.02 1.49 16 29 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 2.47 7.83 -2.39 -0.02 2.45 16 31 H 0.07 2.18 7.99 -2.39 -0.02 2.16 16 32 H 0.38 18.63 7.73 -92.71 -0.72 17.92 16 33 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 34 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.08 2.28 7.48 -2.39 -0.02 2.26 16 36 H 0.11 2.29 7.87 -2.39 -0.02 2.27 16 37 H 0.11 2.31 7.83 -2.39 -0.02 2.29 16 38 H 0.12 2.38 7.84 -2.91 -0.02 2.36 16 39 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 43 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -63.08 355.63 2.03 -61.05 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: 0.26 Total: 32.64 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 5.21 Total: 0.86 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -3.81 Total: -110.49 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -1.66 Total: -29.72 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -63.08 2.03 -61.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989406430.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.607 kcal (2) G-P(sol) polarization free energy of solvation -63.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds