Wall clock time and date at job start Tue Mar 31 2020 02:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47111 * 2 1 4 4 H 1.09001 * 109.86803 * 54.55769 * 3 2 1 5 5 C 1.54101 * 109.87984 * 175.71350 * 3 2 1 6 6 C 1.54810 * 104.18642 * 121.46039 * 5 3 2 7 7 C 1.54998 * 102.09455 * 20.87799 * 6 5 3 8 8 H 1.09001 * 110.74868 * 81.54674 * 7 6 5 9 9 C 1.50700 * 110.61833 * 204.47910 * 7 6 5 10 10 O 1.21279 * 120.00013 * 110.52748 * 9 7 6 11 11 N 1.34784 * 119.99570 * 290.52379 * 9 7 6 12 12 C 1.46496 * 119.99274 * 180.02562 * 11 9 7 13 13 H 1.09000 * 115.50008 * 350.37565 * 12 11 9 14 14 C 1.53006 * 117.43912 * 204.99725 * 12 11 9 15 15 H 1.09001 * 119.54091 * 5.71898 * 14 12 11 16 16 C 1.54391 * 118.11998 * 160.80813 * 14 12 11 17 17 N 1.48143 * 104.61751 * 89.21261 * 16 14 12 18 18 C 1.36935 * 127.84007 * 140.41217 * 17 16 14 19 19 H 1.08002 * 120.00005 * 195.59042 * 18 17 16 20 20 C 1.38813 * 119.99942 * 15.59224 * 18 17 16 21 21 N 1.31614 * 120.00177 * 9.01451 * 20 18 17 22 22 Si 1.86801 * 119.99921 * 189.01403 * 20 18 17 23 23 H 1.48503 * 109.47128 * 94.45842 * 22 20 18 24 24 H 1.48497 * 109.47258 * 214.45597 * 22 20 18 25 25 H 1.48500 * 109.47330 * 334.46348 * 22 20 18 26 26 C 1.48148 * 104.32296 * 320.41256 * 17 16 14 27 27 C 1.54289 * 61.50073 * 253.26703 * 14 12 11 28 28 H 1.08994 * 121.81051 * 108.86518 * 27 14 12 29 29 O 1.43741 * 109.88092 * 293.54717 * 3 2 1 30 30 H 1.09004 * 109.46730 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47189 * 299.99364 * 1 2 3 32 32 H 1.08999 * 109.47042 * 60.00177 * 1 2 3 33 33 H 1.09000 * 109.47189 * 240.00636 * 2 1 3 34 34 H 1.08997 * 109.47413 * 120.00190 * 2 1 3 35 35 H 1.09006 * 110.48684 * 240.13215 * 5 3 2 36 36 H 1.09002 * 110.48985 * 2.64801 * 5 3 2 37 37 H 1.09004 * 110.90544 * 262.68302 * 6 5 3 38 38 H 1.09001 * 110.90713 * 139.08108 * 6 5 3 39 39 H 0.96998 * 120.00108 * 0.02562 * 11 9 7 40 40 H 1.08995 * 110.41172 * 330.42520 * 16 14 12 41 41 H 1.09000 * 110.50772 * 208.04658 * 16 14 12 42 42 H 0.96998 * 120.00006 * 179.97438 * 21 20 18 43 43 H 1.09003 * 110.41004 * 158.36796 * 26 17 16 44 44 H 1.09001 * 110.40789 * 280.79917 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6030 1.9899 0.8352 5 6 3.5771 1.4548 0.1083 6 6 4.0409 2.2090 -1.1616 7 6 2.7657 2.9975 -1.5549 8 1 2.6785 3.9099 -0.9649 9 6 2.7732 3.3183 -3.0274 10 8 1.9862 2.7720 -3.7710 11 7 3.6545 4.2125 -3.5177 12 6 3.6614 4.5247 -4.9490 13 1 3.0423 3.8801 -5.5729 14 6 4.9686 5.0441 -5.5511 15 1 5.8677 5.0776 -4.9358 16 6 5.1516 4.9532 -7.0814 17 7 4.5935 6.2235 -7.6008 18 6 5.0811 7.0022 -8.6162 19 1 4.7334 8.0181 -8.7322 20 6 6.0221 6.4858 -9.4963 21 7 6.3148 5.2030 -9.4687 22 14 6.8730 7.6118 -10.7201 23 1 8.1639 8.0758 -10.1512 24 1 7.1261 6.8705 -11.9817 25 1 6.0057 8.7842 -11.0002 26 6 3.3884 6.4602 -6.7723 27 6 3.8059 6.0377 -5.3473 28 1 3.8391 6.8113 -4.5802 29 8 1.6938 2.0834 -1.2392 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.8921 1.9883 1.0052 36 1 3.9674 0.4371 0.1140 37 1 4.3236 1.5093 -1.9481 38 1 4.8627 2.8875 -0.9327 39 1 4.2842 4.6492 -2.9230 40 1 4.5979 4.1035 -7.4807 41 1 6.2083 4.8704 -7.3354 42 1 6.9722 4.8421 -10.0839 43 1 3.1153 7.5153 -6.7912 44 1 2.5592 5.8458 -7.1233 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025807225.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:42 Heat of formation + Delta-G solvation = -26.945906 kcal Electronic energy + Delta-G solvation = -23513.744673 eV Core-core repulsion = 20046.682861 eV Total energy + Delta-G solvation = -3467.061812 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.48890 -39.10990 -37.93841 -34.48015 -33.87206 -32.84893 -32.19437 -30.32978 -28.78386 -27.12680 -25.74327 -24.55061 -22.43293 -21.79592 -21.19870 -20.53158 -20.11021 -19.23129 -17.36117 -17.00232 -16.80565 -16.43889 -15.75452 -15.02826 -14.77361 -14.62419 -13.89448 -13.76968 -13.73504 -13.55655 -13.31620 -13.23910 -12.76614 -12.24501 -12.21109 -12.06166 -11.80360 -11.52294 -11.46583 -11.33043 -11.09456 -11.00310 -10.90449 -10.84456 -10.39336 -10.19309 -10.16001 -10.07223 -9.75164 -9.61033 -9.23005 -8.72975 -8.28657 -6.87561 -5.80406 -3.14791 2.53764 2.78007 3.37728 3.43134 3.45517 3.72728 4.12828 4.24072 4.31383 4.46178 4.52325 4.57079 4.76980 4.85678 4.97347 5.02137 5.07732 5.20425 5.34715 5.37002 5.38208 5.39270 5.50777 5.56690 5.60052 5.68925 5.73291 5.82212 5.91918 5.92549 6.10028 6.13198 6.21107 6.50960 6.56245 6.70273 6.81315 6.90739 7.33911 7.52228 7.54631 7.70676 8.19754 8.25857 9.10215 9.72877 10.49959 11.34006 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.042916 B = 0.002574 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.275873 B =10876.530952 C =10979.718761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C 0.072 3.928 4 H 0.071 0.929 5 C -0.151 4.151 6 C -0.144 4.144 7 C 0.061 3.939 8 H 0.094 0.906 9 C 0.520 3.480 10 O -0.517 6.517 11 N -0.694 5.694 12 C 0.095 3.905 13 H 0.134 0.866 14 C -0.175 4.175 15 H 0.100 0.900 16 C 0.184 3.816 17 N -0.593 5.593 18 C -0.227 4.227 19 H 0.077 0.923 20 C -0.006 4.006 21 N -0.915 5.915 22 Si 0.914 3.086 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.154 3.846 27 C -0.185 4.185 28 H 0.104 0.896 29 O -0.340 6.340 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.398 0.602 40 H 0.026 0.974 41 H 0.092 0.908 42 H 0.255 0.745 43 H 0.052 0.948 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.488 -6.838 22.868 24.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C 0.014 3.986 4 H 0.088 0.912 5 C -0.188 4.188 6 C -0.182 4.182 7 C -0.001 4.001 8 H 0.112 0.888 9 C 0.304 3.696 10 O -0.391 6.391 11 N -0.344 5.344 12 C -0.010 4.010 13 H 0.152 0.848 14 C -0.196 4.196 15 H 0.118 0.882 16 C 0.058 3.942 17 N -0.317 5.317 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.561 5.561 22 Si 0.744 3.256 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.205 1.205 26 C 0.028 3.972 27 C -0.206 4.206 28 H 0.122 0.878 29 O -0.258 6.258 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.232 0.768 40 H 0.044 0.956 41 H 0.110 0.890 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.120 -7.285 21.958 23.695 hybrid contribution 1.089 0.884 -0.043 1.403 sum -4.031 -6.401 21.916 23.184 Atomic orbital electron populations 1.21729 0.95174 1.01567 1.02420 1.21715 0.97056 0.94560 1.02595 1.22887 0.93970 0.94418 0.87302 0.91152 1.23016 0.95439 1.02137 0.98234 1.23100 0.96880 0.99743 0.98437 1.22959 0.88368 0.95063 0.93689 0.88800 1.20100 0.80851 0.79346 0.89271 1.90740 1.38424 1.50395 1.59500 1.45253 1.36834 1.43325 1.09016 1.22539 1.02015 0.95938 0.80537 0.84798 1.24666 0.91353 1.02653 1.00942 0.88154 1.21079 1.01193 0.88156 0.83820 1.45181 1.24239 1.24749 1.37503 1.19013 1.19863 0.93392 1.03207 0.90480 1.24911 1.01190 0.95880 0.98349 1.69894 1.35889 1.10680 1.39680 0.86079 0.79583 0.79530 0.80426 1.21565 1.21651 1.20476 1.21132 0.90546 0.98229 0.87334 1.25031 1.04851 0.90853 0.99881 0.87759 1.89044 1.40853 1.56206 1.39743 0.92809 0.92982 0.91668 0.90985 0.90873 0.90289 0.89880 0.89659 0.89283 0.76804 0.95610 0.89029 0.93528 0.92977 0.95446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.82 37.16 0.37 -0.91 16 2 C -0.12 -0.98 5.42 -26.73 -0.14 -1.12 16 3 C 0.07 0.62 3.41 -26.16 -0.09 0.53 16 4 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 5 C -0.15 -1.00 6.64 -25.20 -0.17 -1.17 16 6 C -0.14 -1.15 6.57 -24.72 -0.16 -1.32 16 7 C 0.06 0.65 3.76 -26.83 -0.10 0.55 16 8 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 9 C 0.52 7.58 7.20 -10.98 -0.08 7.50 16 10 O -0.52 -10.11 16.14 -13.48 -0.22 -10.33 16 11 N -0.69 -9.19 5.57 -51.64 -0.29 -9.48 16 12 C 0.10 1.62 6.20 -65.69 -0.41 1.21 16 13 H 0.13 2.61 7.40 -51.93 -0.38 2.23 16 14 C -0.17 -3.25 6.91 -89.21 -0.62 -3.87 16 15 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 16 C 0.18 4.42 5.70 -2.41 -0.01 4.40 16 17 N -0.59 -15.26 3.38 -168.86 -0.57 -15.83 16 18 C -0.23 -6.31 10.35 -15.06 -0.16 -6.47 16 19 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 20 C -0.01 -0.17 5.40 -17.43 -0.09 -0.27 16 21 N -0.92 -26.82 10.86 55.49 0.60 -26.22 16 22 Si 0.91 21.89 29.56 -169.99 -5.03 16.87 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 26 C 0.15 3.29 7.06 -2.41 -0.02 3.27 16 27 C -0.18 -3.28 7.23 -86.98 -0.63 -3.91 16 28 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 29 O -0.34 -4.31 10.09 -54.27 -0.55 -4.86 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.69 7.89 -51.93 -0.41 0.28 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.50 7.70 -51.93 -0.40 0.10 16 37 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.40 3.92 8.83 -40.82 -0.36 3.56 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 2.44 6.50 -51.93 -0.34 2.10 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 356.98 15.07 5.38 5.38 Total: -1.00 -33.52 356.98 -10.33 -43.85 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -7.35 Total: 2.18 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -2.31 Total: -1.57 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.26 Total: -51.52 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.77 Total: -15.19 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.52 -10.33 -43.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025807225.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.904 kcal (2) G-P(sol) polarization free energy of solvation -33.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds