Wall clock time and date at job start Tue Mar 31 2020 02:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47111 * 2 1 4 4 H 1.09001 * 109.86803 * 54.55769 * 3 2 1 5 5 C 1.54101 * 109.87984 * 175.71350 * 3 2 1 6 6 C 1.54810 * 104.18642 * 121.46039 * 5 3 2 7 7 C 1.54998 * 102.09455 * 20.87799 * 6 5 3 8 8 H 1.09001 * 110.74868 * 81.54674 * 7 6 5 9 9 C 1.50700 * 110.61833 * 204.47910 * 7 6 5 10 10 O 1.21279 * 120.00013 * 110.52748 * 9 7 6 11 11 N 1.34784 * 119.99570 * 290.52379 * 9 7 6 12 12 C 1.46496 * 119.99274 * 180.02562 * 11 9 7 13 13 H 1.09000 * 115.50008 * 350.37565 * 12 11 9 14 14 C 1.53006 * 117.43912 * 204.99725 * 12 11 9 15 15 H 1.09001 * 119.54091 * 5.71898 * 14 12 11 16 16 C 1.54391 * 118.11998 * 160.80813 * 14 12 11 17 17 N 1.48143 * 104.61751 * 89.21261 * 16 14 12 18 18 C 1.36935 * 127.84007 * 140.41217 * 17 16 14 19 19 H 1.08002 * 120.00005 * 195.59042 * 18 17 16 20 20 C 1.38813 * 119.99942 * 15.59224 * 18 17 16 21 21 N 1.31614 * 120.00177 * 9.01451 * 20 18 17 22 22 Si 1.86801 * 119.99921 * 189.01403 * 20 18 17 23 23 H 1.48503 * 109.47128 * 94.45842 * 22 20 18 24 24 H 1.48497 * 109.47258 * 214.45597 * 22 20 18 25 25 H 1.48500 * 109.47330 * 334.46348 * 22 20 18 26 26 C 1.48148 * 104.32296 * 320.41256 * 17 16 14 27 27 C 1.54289 * 61.50073 * 253.26703 * 14 12 11 28 28 H 1.08994 * 121.81051 * 108.86518 * 27 14 12 29 29 O 1.43741 * 109.88092 * 293.54717 * 3 2 1 30 30 H 1.09004 * 109.46730 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47189 * 299.99364 * 1 2 3 32 32 H 1.08999 * 109.47042 * 60.00177 * 1 2 3 33 33 H 1.09000 * 109.47189 * 240.00636 * 2 1 3 34 34 H 1.08997 * 109.47413 * 120.00190 * 2 1 3 35 35 H 1.09006 * 110.48684 * 240.13215 * 5 3 2 36 36 H 1.09002 * 110.48985 * 2.64801 * 5 3 2 37 37 H 1.09004 * 110.90544 * 262.68302 * 6 5 3 38 38 H 1.09001 * 110.90713 * 139.08108 * 6 5 3 39 39 H 0.96998 * 120.00108 * 0.02562 * 11 9 7 40 40 H 1.08995 * 110.41172 * 330.42520 * 16 14 12 41 41 H 1.09000 * 110.50772 * 208.04658 * 16 14 12 42 42 H 0.96998 * 120.00006 * 179.97438 * 21 20 18 43 43 H 1.09003 * 110.41004 * 158.36796 * 26 17 16 44 44 H 1.09001 * 110.40789 * 280.79917 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6030 1.9899 0.8352 5 6 3.5771 1.4548 0.1083 6 6 4.0409 2.2090 -1.1616 7 6 2.7657 2.9975 -1.5549 8 1 2.6785 3.9099 -0.9649 9 6 2.7732 3.3183 -3.0274 10 8 1.9862 2.7720 -3.7710 11 7 3.6545 4.2125 -3.5177 12 6 3.6614 4.5247 -4.9490 13 1 3.0423 3.8801 -5.5729 14 6 4.9686 5.0441 -5.5511 15 1 5.8677 5.0776 -4.9358 16 6 5.1516 4.9532 -7.0814 17 7 4.5935 6.2235 -7.6008 18 6 5.0811 7.0022 -8.6162 19 1 4.7334 8.0181 -8.7322 20 6 6.0221 6.4858 -9.4963 21 7 6.3148 5.2030 -9.4687 22 14 6.8730 7.6118 -10.7201 23 1 8.1639 8.0758 -10.1512 24 1 7.1261 6.8705 -11.9817 25 1 6.0057 8.7842 -11.0002 26 6 3.3884 6.4602 -6.7723 27 6 3.8059 6.0377 -5.3473 28 1 3.8391 6.8113 -4.5802 29 8 1.6938 2.0834 -1.2392 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.8921 1.9883 1.0052 36 1 3.9674 0.4371 0.1140 37 1 4.3236 1.5093 -1.9481 38 1 4.8627 2.8875 -0.9327 39 1 4.2842 4.6492 -2.9230 40 1 4.5979 4.1035 -7.4807 41 1 6.2083 4.8704 -7.3354 42 1 6.9722 4.8421 -10.0839 43 1 3.1153 7.5153 -6.7912 44 1 2.5592 5.8458 -7.1233 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025807225.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:42 Heat of formation + Delta-G solvation = -48.907548 kcal Electronic energy + Delta-G solvation = -23514.697002 eV Core-core repulsion = 20046.682861 eV Total energy + Delta-G solvation = -3468.014141 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.47076 -40.36703 -39.29039 -36.07733 -34.64303 -34.35283 -33.08715 -32.05695 -29.64721 -28.91228 -27.56772 -25.50462 -23.55259 -22.91594 -22.01039 -21.81104 -21.45862 -20.83418 -18.88963 -18.36488 -17.90233 -17.38952 -16.83154 -16.60929 -16.12851 -15.69991 -15.50212 -14.97655 -14.66646 -14.58299 -14.48148 -14.40462 -13.96121 -13.79945 -13.34850 -13.22810 -12.96818 -12.88767 -12.72068 -12.69323 -12.43608 -12.14050 -12.02855 -11.97218 -11.88853 -11.71705 -11.67230 -11.47358 -11.02051 -10.86152 -10.73961 -10.57924 -9.68562 -8.94148 -7.92838 -5.30171 1.40560 1.46838 1.48322 1.58157 1.69746 2.47270 2.75256 2.96422 3.26816 3.40777 3.55436 3.63431 3.82298 3.88240 3.90488 3.94683 4.10954 4.13066 4.19320 4.32199 4.39234 4.40583 4.50029 4.61898 4.76956 4.80501 4.87453 4.89899 4.92313 4.98015 5.03512 5.07968 5.17746 5.27487 5.28597 5.38648 5.42516 5.43272 5.51540 5.63267 5.91052 6.15284 6.48964 6.98903 7.16843 7.65710 8.44223 9.21184 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.042916 B = 0.002574 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.275873 B =10876.530952 C =10979.718761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.063 3.937 4 H 0.087 0.913 5 C -0.142 4.142 6 C -0.140 4.140 7 C 0.064 3.936 8 H 0.130 0.870 9 C 0.516 3.484 10 O -0.577 6.577 11 N -0.674 5.674 12 C 0.112 3.888 13 H 0.102 0.898 14 C -0.170 4.170 15 H 0.130 0.870 16 C 0.186 3.814 17 N -0.617 5.617 18 C -0.241 4.241 19 H 0.084 0.916 20 C -0.064 4.064 21 N -0.949 5.949 22 Si 0.984 3.016 23 H -0.283 1.283 24 H -0.296 1.296 25 H -0.266 1.266 26 C 0.145 3.855 27 C -0.165 4.165 28 H 0.142 0.858 29 O -0.380 6.380 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.052 0.948 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.122 0.878 39 H 0.421 0.579 40 H -0.008 1.008 41 H 0.061 0.939 42 H 0.250 0.750 43 H 0.065 0.935 44 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.573 -5.450 26.203 27.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C 0.006 3.994 4 H 0.104 0.896 5 C -0.180 4.180 6 C -0.178 4.178 7 C 0.003 3.997 8 H 0.147 0.853 9 C 0.303 3.697 10 O -0.455 6.455 11 N -0.325 5.325 12 C 0.005 3.995 13 H 0.120 0.880 14 C -0.191 4.191 15 H 0.147 0.853 16 C 0.060 3.940 17 N -0.341 5.341 18 C -0.369 4.369 19 H 0.101 0.899 20 C -0.258 4.258 21 N -0.597 5.597 22 Si 0.811 3.189 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.191 1.191 26 C 0.020 3.980 27 C -0.187 4.187 28 H 0.160 0.840 29 O -0.300 6.300 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.140 0.860 39 H 0.259 0.741 40 H 0.010 0.990 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -4.198 -5.869 25.358 26.365 hybrid contribution 0.697 0.389 -1.094 1.354 sum -3.501 -5.480 24.264 25.121 Atomic orbital electron populations 1.21721 0.95824 1.01797 1.01510 1.21771 0.96544 0.94802 1.02934 1.23154 0.95727 0.94283 0.86209 0.89553 1.23032 0.93592 1.02815 0.98544 1.23149 0.96478 0.99762 0.98439 1.23122 0.89426 0.96658 0.90499 0.85304 1.20999 0.79579 0.78134 0.90974 1.90720 1.40863 1.52525 1.61363 1.44993 1.37086 1.43056 1.07404 1.22032 0.99981 0.95080 0.82440 0.88008 1.24342 0.93185 1.04035 0.97490 0.85270 1.20824 0.98602 0.86865 0.87707 1.45493 1.25898 1.24810 1.37892 1.19421 1.19738 0.93979 1.03793 0.89854 1.25796 1.02172 0.97295 1.00500 1.70101 1.36537 1.12489 1.40564 0.84993 0.78517 0.77811 0.77565 1.20969 1.22244 1.19073 1.21277 0.88901 0.98922 0.88904 1.24955 1.03266 0.91830 0.98607 0.84049 1.89026 1.42132 1.57089 1.41730 0.92073 0.91674 0.94688 0.92917 0.88131 0.87361 0.89296 0.91852 0.86014 0.74084 0.98989 0.92061 0.94066 0.91636 0.96762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.82 71.98 0.71 -1.76 16 2 C -0.12 -1.81 5.42 30.59 0.17 -1.65 16 3 C 0.06 0.95 3.41 30.97 0.11 1.05 16 4 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 5 C -0.14 -1.37 6.64 31.58 0.21 -1.16 16 6 C -0.14 -1.81 6.57 31.90 0.21 -1.60 16 7 C 0.06 1.21 3.76 30.53 0.11 1.32 16 8 H 0.13 1.56 8.14 -2.39 -0.02 1.55 16 9 C 0.52 14.58 7.20 87.66 0.63 15.21 16 10 O -0.58 -23.30 16.14 15.18 0.24 -23.06 16 11 N -0.67 -16.37 5.57 -435.68 -2.43 -18.79 16 12 C 0.11 3.72 6.20 46.44 0.29 4.01 16 13 H 0.10 4.16 7.40 -2.39 -0.02 4.14 16 14 C -0.17 -6.15 6.91 -9.88 -0.07 -6.22 16 15 H 0.13 3.98 8.14 -2.39 -0.02 3.96 16 16 C 0.19 9.29 5.70 86.54 0.49 9.79 16 17 N -0.62 -32.34 3.38 -688.15 -2.33 -34.66 16 18 C -0.24 -13.57 10.35 84.03 0.87 -12.70 16 19 H 0.08 4.47 7.84 -2.91 -0.02 4.44 16 20 C -0.06 -3.66 5.40 84.86 0.46 -3.20 16 21 N -0.95 -57.63 10.86 21.65 0.24 -57.39 16 22 Si 0.98 45.51 29.56 68.60 2.03 47.53 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 24 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 C 0.15 6.19 7.06 86.53 0.61 6.80 16 27 C -0.17 -5.56 7.23 -8.44 -0.06 -5.62 16 28 H 0.14 3.80 8.14 -2.39 -0.02 3.78 16 29 O -0.38 -9.31 10.09 -130.77 -1.32 -10.63 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.03 0.77 7.89 -2.39 -0.02 0.75 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 36 H 0.09 0.77 7.70 -2.39 -0.02 0.76 16 37 H 0.06 1.11 8.05 -2.38 -0.02 1.09 16 38 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.42 6.53 8.83 -92.71 -0.82 5.72 16 40 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H 0.06 3.41 6.50 -2.39 -0.02 3.39 16 42 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 43 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -78.20 356.98 1.34 -76.86 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.17 Total: 15.88 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 4.74 Total: 4.27 kcal Atomic # 7 Polarization: -106.33 SS G_CDS: -4.52 Total: -110.85 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -1.07 Total: -33.69 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -78.20 1.34 -76.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025807225.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.950 kcal (2) G-P(sol) polarization free energy of solvation -78.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds