Wall clock time and date at job start Tue Mar 31 2020 03:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00102 * 2 1 4 4 H 1.09000 * 110.01745 * 28.60770 * 3 2 1 5 5 C 1.54266 * 110.07305 * 267.19176 * 3 2 1 6 6 C 1.54890 * 104.19506 * 264.30144 * 5 3 2 7 7 C 1.54890 * 102.75088 * 322.05865 * 6 5 3 8 8 C 1.53878 * 110.03234 * 149.99977 * 3 2 1 9 9 H 1.09001 * 110.02949 * 0.04927 * 8 3 2 10 10 C 1.50701 * 110.02864 * 238.66564 * 8 3 2 11 11 O 1.21277 * 120.00369 * 0.69458 * 10 8 3 12 12 N 1.34782 * 119.99842 * 180.69076 * 10 8 3 13 13 C 1.46498 * 120.00090 * 180.02562 * 12 10 8 14 14 H 1.08997 * 115.51313 * 350.41265 * 13 12 10 15 15 C 1.53003 * 117.44161 * 205.00028 * 13 12 10 16 16 H 1.09003 * 119.53597 * 4.12058 * 15 13 12 17 17 C 1.54383 * 118.12289 * 159.20853 * 15 13 12 18 18 N 1.48147 * 104.61403 * 87.19092 * 17 15 13 19 19 C 1.36943 * 127.83795 * 140.41368 * 18 17 15 20 20 H 1.07997 * 119.99871 * 344.39219 * 19 18 17 21 21 C 1.38814 * 120.00110 * 164.38913 * 19 18 17 22 22 N 1.31622 * 119.99583 * 350.81663 * 21 19 18 23 23 Si 1.86793 * 120.00040 * 170.81748 * 21 19 18 24 24 H 1.48501 * 109.47511 * 94.81056 * 23 21 19 25 25 H 1.48504 * 109.47177 * 214.81419 * 23 21 19 26 26 H 1.48502 * 109.47268 * 334.81113 * 23 21 19 27 27 C 1.48149 * 104.32566 * 320.41597 * 18 17 15 28 28 C 1.52994 * 117.44151 * 135.76327 * 13 12 10 29 29 H 1.08996 * 119.54238 * 355.87478 * 28 13 12 30 30 H 1.09004 * 109.47221 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47612 * 299.99716 * 1 2 3 32 32 H 1.09003 * 109.47140 * 60.00031 * 1 2 3 33 33 H 1.09000 * 110.48279 * 22.97949 * 5 3 2 34 34 H 1.08996 * 110.48657 * 145.62170 * 5 3 2 35 35 H 1.08998 * 110.75296 * 80.37212 * 6 5 3 36 36 H 1.09002 * 110.75333 * 203.55652 * 6 5 3 37 37 H 1.09001 * 110.48196 * 279.26662 * 7 6 5 38 38 H 1.08994 * 110.48716 * 156.61811 * 7 6 5 39 39 H 0.97000 * 119.99543 * 359.97438 * 12 10 8 40 40 H 1.09001 * 110.40978 * 205.97563 * 17 15 13 41 41 H 1.09001 * 110.40909 * 328.29222 * 17 15 13 42 42 H 0.97005 * 119.99362 * 180.02562 * 22 21 19 43 43 H 1.08999 * 110.40624 * 158.37363 * 27 18 17 44 44 H 1.08998 * 110.40572 * 280.68234 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3406 2.0120 0.4904 5 6 2.2904 1.7602 -1.4472 6 6 3.7774 1.3941 -1.6792 7 6 4.4265 1.7167 -0.3104 8 6 3.3684 1.2777 0.7228 9 1 3.5845 0.2683 1.0729 10 6 3.3533 2.2352 1.8865 11 8 2.3527 2.8745 2.1329 12 7 4.4520 2.3809 2.6535 13 6 4.4373 3.3112 3.7851 14 1 3.5665 3.9641 3.8448 15 6 5.7798 3.8824 4.2458 16 1 6.6856 3.6418 3.6892 17 6 5.7711 5.1889 5.0683 18 7 5.6080 4.7455 6.4724 19 6 6.2194 5.2502 7.5891 20 1 7.0874 5.8849 7.4892 21 6 5.7234 4.9459 8.8494 22 7 4.5682 4.3268 8.9700 23 14 6.6954 5.4152 10.3739 24 1 6.2137 6.7236 10.8849 25 1 6.5090 4.3766 11.4189 26 1 8.1364 5.5182 10.0300 27 6 4.6336 3.6324 6.3946 28 6 5.0476 2.8287 5.1025 29 1 5.4079 1.8033 5.1842 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6513 1.2216 -2.1468 34 1 2.1427 2.8357 -1.5444 35 1 3.8821 0.3355 -1.9165 36 1 4.2081 2.0099 -2.4688 37 1 4.6237 2.7852 -0.2240 38 1 5.3461 1.1463 -0.1804 39 1 5.2522 1.8692 2.4567 40 1 6.7138 5.7220 4.9450 41 1 4.9356 5.8214 4.7681 42 1 4.2214 4.1145 9.8508 43 1 4.7181 2.9912 7.2720 44 1 3.6191 4.0209 6.3051 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025821716.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:59 Heat of formation + Delta-G solvation = -50.425928 kcal Electronic energy + Delta-G solvation = -23749.701259 eV Core-core repulsion = 20281.621277 eV Total energy + Delta-G solvation = -3468.079982 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.53576 -40.25148 -39.03528 -36.68019 -36.11435 -34.34517 -32.25379 -30.24667 -29.16085 -28.79306 -27.58739 -27.13649 -24.08020 -22.63896 -22.00968 -21.63638 -20.92389 -20.61534 -18.87291 -18.68530 -17.84486 -17.18307 -16.77177 -16.60215 -16.21369 -15.95971 -15.55226 -15.32092 -14.98229 -14.73126 -14.65265 -14.32873 -13.80518 -13.42814 -13.33253 -13.23582 -12.91732 -12.74425 -12.68128 -12.53781 -12.31923 -12.08435 -12.04350 -11.98510 -11.89622 -11.70835 -11.66961 -11.57633 -10.93603 -10.81334 -10.71933 -10.55208 -9.73472 -8.94244 -7.93087 -5.30503 1.46496 1.47065 1.48315 1.58230 1.86292 2.47457 2.82435 2.86956 3.27323 3.37320 3.52943 3.60674 3.83534 3.86172 3.93060 4.08197 4.14218 4.34760 4.35567 4.38422 4.42697 4.43552 4.48140 4.56398 4.73025 4.75609 4.81020 4.84889 4.90731 4.93017 4.97987 5.01088 5.18128 5.19861 5.26411 5.38780 5.41519 5.44133 5.52478 5.61963 6.14767 6.23017 6.47849 6.98206 7.16823 7.65663 8.44145 9.20866 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.034949 B = 0.002831 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.975354 B = 9889.844867 C =10382.281034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.083 3.917 4 H 0.063 0.937 5 C -0.143 4.143 6 C -0.113 4.113 7 C -0.109 4.109 8 C -0.106 4.106 9 H 0.124 0.876 10 C 0.522 3.478 11 O -0.584 6.584 12 N -0.678 5.678 13 C 0.112 3.888 14 H 0.102 0.898 15 C -0.157 4.157 16 H 0.142 0.858 17 C 0.147 3.853 18 N -0.617 5.617 19 C -0.241 4.241 20 H 0.085 0.915 21 C -0.065 4.065 22 N -0.950 5.950 23 Si 0.983 3.017 24 H -0.287 1.287 25 H -0.293 1.293 26 H -0.264 1.264 27 C 0.190 3.810 28 C -0.187 4.187 29 H 0.128 0.872 30 H 0.102 0.898 31 H 0.032 0.968 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.419 0.581 40 H 0.067 0.933 41 H 0.018 0.982 42 H 0.250 0.750 43 H 0.055 0.945 44 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.207 -9.503 -23.656 25.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C 0.024 3.976 4 H 0.081 0.919 5 C -0.181 4.181 6 C -0.150 4.150 7 C -0.147 4.147 8 C -0.127 4.127 9 H 0.142 0.858 10 C 0.310 3.690 11 O -0.464 6.464 12 N -0.328 5.328 13 C 0.005 3.995 14 H 0.120 0.880 15 C -0.178 4.178 16 H 0.160 0.840 17 C 0.022 3.978 18 N -0.340 5.340 19 C -0.370 4.370 20 H 0.103 0.897 21 C -0.258 4.258 22 N -0.597 5.597 23 Si 0.811 3.189 24 H -0.213 1.213 25 H -0.219 1.219 26 H -0.189 1.189 27 C 0.064 3.936 28 C -0.208 4.208 29 H 0.145 0.855 30 H 0.121 0.879 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.123 0.877 39 H 0.257 0.743 40 H 0.086 0.914 41 H 0.036 0.964 42 H 0.059 0.941 43 H 0.073 0.927 44 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges -0.786 -9.186 -23.231 24.994 hybrid contribution -0.059 0.370 1.381 1.431 sum -0.846 -8.817 -21.850 23.577 Atomic orbital electron populations 1.22927 0.80032 1.03756 1.00264 1.87826 1.20893 1.27775 1.95142 1.22760 0.93758 0.84787 0.96261 0.91899 1.22848 0.98870 1.01318 0.95023 1.22449 0.93467 1.02530 0.96584 1.22404 0.97199 1.02109 0.92972 1.22010 0.97461 0.99801 0.93417 0.85846 1.21039 0.82063 0.82526 0.83384 1.90672 1.34169 1.49199 1.72385 1.45137 1.16020 1.43079 1.28525 1.21414 0.97028 0.94996 0.86081 0.88037 1.24175 0.96083 0.96032 1.01515 0.84049 1.21292 0.99078 0.93499 0.83940 1.45424 1.50331 1.36077 1.02217 1.19428 1.07186 1.26369 0.83995 0.89694 1.25811 0.97511 1.01672 1.00827 1.70118 1.19769 1.47209 1.22621 0.85002 0.78490 0.76901 0.78523 1.21345 1.21947 1.18866 1.21348 0.89827 0.88691 0.93780 1.25122 1.05514 0.98864 0.91319 0.85459 0.87935 0.94956 0.92868 0.90134 0.90860 0.90198 0.89532 0.91189 0.87731 0.74307 0.91430 0.96391 0.94114 0.92669 0.98627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.85 113.37 1.23 1.69 16 2 O -0.40 -8.63 10.25 -148.98 -1.53 -10.16 16 3 C 0.08 1.77 2.98 31.32 0.09 1.86 16 4 H 0.06 1.71 6.05 -2.39 -0.01 1.69 16 5 C -0.14 -2.26 6.57 31.67 0.21 -2.05 16 6 C -0.11 -1.33 6.91 31.89 0.22 -1.11 16 7 C -0.11 -1.40 6.29 31.67 0.20 -1.20 16 8 C -0.11 -2.04 3.11 -10.81 -0.03 -2.07 16 9 H 0.12 2.13 7.95 -2.39 -0.02 2.12 16 10 C 0.52 14.16 7.00 87.66 0.61 14.77 16 11 O -0.58 -21.56 14.78 -3.02 -0.04 -21.60 16 12 N -0.68 -16.64 5.50 -442.54 -2.43 -19.08 16 13 C 0.11 3.69 5.92 44.99 0.27 3.96 16 14 H 0.10 4.06 7.40 -2.39 -0.02 4.04 16 15 C -0.16 -5.17 6.98 -9.89 -0.07 -5.24 16 16 H 0.14 3.62 8.14 -2.39 -0.02 3.60 16 17 C 0.15 6.11 7.04 86.53 0.61 6.72 16 18 N -0.62 -32.26 3.38 -681.42 -2.30 -34.56 16 19 C -0.24 -13.58 10.35 84.03 0.87 -12.71 16 20 H 0.09 4.51 7.85 -2.91 -0.02 4.49 16 21 C -0.06 -3.70 5.40 84.86 0.46 -3.25 16 22 N -0.95 -58.09 10.87 21.65 0.24 -57.85 16 23 Si 0.98 45.60 29.56 68.60 2.03 47.63 16 24 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 26 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 27 C 0.19 9.65 5.76 87.72 0.51 10.15 16 28 C -0.19 -6.99 7.34 -8.70 -0.06 -7.05 16 29 H 0.13 4.22 8.14 -2.39 -0.02 4.20 16 30 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.03 0.63 8.10 -2.39 -0.02 0.61 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 33 H 0.08 1.15 8.07 -2.39 -0.02 1.14 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 1.00 7.85 -2.39 -0.02 0.98 16 38 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.42 7.07 8.81 -92.71 -0.82 6.25 16 40 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 43 H 0.05 3.14 6.52 -2.39 -0.02 3.13 16 44 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 Total: -1.00 -73.51 354.63 1.23 -72.28 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.17 Total: 18.88 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: 5.11 Total: 4.46 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -4.50 Total: -111.49 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -1.57 Total: -31.76 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -73.51 1.23 -72.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025821716.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.850 kcal (2) G-P(sol) polarization free energy of solvation -73.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds