Wall clock time and date at job start Tue Mar 31 2020 03:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00486 * 2 1 4 4 H 1.08999 * 110.43225 * 328.91144 * 3 2 1 5 5 C 1.54894 * 110.48655 * 91.45016 * 3 2 1 6 6 C 1.54893 * 102.74620 * 156.62201 * 5 3 2 7 7 C 1.54265 * 104.19860 * 322.06033 * 6 5 3 8 8 H 1.08996 * 110.03298 * 264.27986 * 7 6 5 9 9 C 1.50693 * 110.03335 * 142.89348 * 7 6 5 10 10 O 1.21283 * 120.00526 * 242.09458 * 9 7 6 11 11 N 1.34782 * 120.00037 * 62.09191 * 9 7 6 12 12 C 1.46495 * 120.00093 * 179.97438 * 11 9 7 13 13 H 1.09004 * 115.49625 * 9.62094 * 12 11 9 14 14 C 1.52996 * 117.44500 * 224.23773 * 12 11 9 15 15 H 1.09003 * 119.54049 * 4.12205 * 14 12 11 16 16 C 1.54790 * 117.94164 * 160.75465 * 14 12 11 17 17 N 1.48150 * 104.41815 * 87.46648 * 16 14 12 18 18 C 1.36933 * 127.83528 * 140.36727 * 17 16 14 19 19 H 1.07998 * 120.00773 * 338.37365 * 18 17 16 20 20 C 1.38819 * 119.99655 * 158.37879 * 18 17 16 21 21 N 1.31615 * 120.00000 * 335.54352 * 20 18 17 22 22 Si 1.86803 * 120.00006 * 155.55040 * 20 18 17 23 23 H 1.48499 * 109.47195 * 89.99634 * 22 20 18 24 24 H 1.48507 * 109.46994 * 329.99965 * 22 20 18 25 25 H 1.48494 * 109.47086 * 210.00046 * 22 20 18 26 26 C 1.48141 * 104.32133 * 320.11100 * 17 16 14 27 27 C 1.53002 * 117.44354 * 154.99762 * 12 11 9 28 28 H 1.09001 * 119.53801 * 354.28485 * 27 12 11 29 29 C 1.53877 * 106.63965 * 23.58479 * 7 6 5 30 30 H 1.09011 * 109.46720 * 60.00076 * 1 2 3 31 31 H 1.09000 * 109.47467 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47256 * 300.00497 * 1 2 3 33 33 H 1.09000 * 110.75433 * 38.31294 * 5 3 2 34 34 H 1.08994 * 110.75493 * 274.93864 * 5 3 2 35 35 H 1.09001 * 110.48539 * 203.38109 * 6 5 3 36 36 H 1.09003 * 110.59561 * 80.79506 * 6 5 3 37 37 H 0.97002 * 119.99655 * 359.97438 * 11 9 7 38 38 H 1.08999 * 110.54193 * 328.72949 * 16 14 12 39 39 H 1.08999 * 110.46666 * 206.16921 * 16 14 12 40 40 H 0.97003 * 120.00000 * 354.38840 * 21 20 18 41 41 H 1.09001 * 110.40844 * 158.63097 * 26 17 16 42 42 H 1.09003 * 110.40914 * 280.93898 * 26 17 16 43 43 H 1.09001 * 110.03273 * 119.30987 * 29 7 6 44 44 H 1.08997 * 110.03234 * 240.73896 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3660 2.0089 -0.5274 5 6 2.2644 1.7857 1.4505 6 6 3.3851 2.8396 1.2702 7 6 4.2882 2.2468 0.1690 8 1 5.1254 1.7136 0.6195 9 6 4.7986 3.3456 -0.7271 10 8 4.5096 3.3511 -1.9050 11 7 5.5762 4.3225 -0.2196 12 6 6.0728 5.3904 -1.0908 13 1 5.6415 5.4183 -2.0915 14 6 7.5413 5.7943 -0.9444 15 1 8.1846 5.2425 -0.2591 16 6 8.2021 6.5629 -2.1143 17 7 7.9044 7.9870 -1.8349 18 6 8.7299 9.0665 -2.0034 19 1 9.8003 8.9275 -2.0385 20 6 8.1908 10.3395 -2.1291 21 7 6.9578 10.4921 -2.5635 22 14 9.2154 11.8361 -1.6818 23 1 9.9592 12.3026 -2.8794 24 1 10.1785 11.4744 -0.6108 25 1 8.3231 12.9207 -1.1996 26 6 6.5088 7.9789 -1.3380 27 6 6.4233 6.7284 -0.4366 28 1 6.2097 6.8817 0.6212 29 6 3.4151 1.2707 -0.6389 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.6065 0.9612 2.0760 34 1 1.3677 2.2430 1.8686 35 1 3.9450 2.9634 2.1971 36 1 2.9666 3.7931 0.9481 37 1 5.8070 4.3184 0.7226 38 1 7.7633 6.2624 -3.0657 39 1 9.2790 6.3940 -2.1212 40 1 6.4539 9.7231 -2.8728 41 1 6.3064 8.8797 -0.7585 42 1 5.8094 7.8983 -2.1702 43 1 3.3606 1.5918 -1.6791 44 1 3.8281 0.2637 -0.5798 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025825005.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:02 Heat of formation + Delta-G solvation = -33.987407 kcal Electronic energy + Delta-G solvation = -23493.792941 eV Core-core repulsion = 20026.425786 eV Total energy + Delta-G solvation = -3467.367155 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.44253 -39.10696 -38.23594 -35.96103 -34.70032 -32.83601 -30.33663 -29.23025 -28.77482 -27.39772 -26.40745 -25.37246 -22.84725 -21.41442 -21.04104 -20.49729 -19.59168 -19.43606 -17.68499 -17.47490 -16.95304 -16.40916 -16.04941 -15.25624 -14.88548 -14.60674 -14.15864 -13.92825 -13.77999 -13.62548 -13.57403 -13.16491 -12.84438 -12.39950 -12.09555 -11.95456 -11.86132 -11.69093 -11.53732 -11.50392 -11.12016 -10.85151 -10.81408 -10.69198 -10.58977 -10.28918 -10.07143 -9.89324 -9.77428 -9.65796 -9.26185 -8.62127 -8.42277 -7.01866 -6.15865 -3.21736 2.54040 3.00609 3.44442 3.48127 3.52302 3.67533 4.11966 4.17501 4.23727 4.46169 4.55131 4.83557 4.93716 4.99987 5.00726 5.05186 5.07933 5.12214 5.20178 5.25467 5.27237 5.30131 5.39051 5.41113 5.54685 5.57755 5.69362 5.76502 5.76785 5.85892 5.90201 6.02651 6.13878 6.35864 6.58529 6.66586 6.73295 6.91291 6.93615 6.95716 7.48669 7.72120 8.19540 8.42138 8.94505 9.75437 10.38345 11.20080 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.041519 B = 0.002550 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.225655 B =10975.963924 C =11091.710312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.082 3.918 4 H 0.069 0.931 5 C -0.144 4.144 6 C -0.115 4.115 7 C -0.110 4.110 8 H 0.103 0.897 9 C 0.520 3.480 10 O -0.536 6.536 11 N -0.696 5.696 12 C 0.097 3.903 13 H 0.131 0.869 14 C -0.178 4.178 15 H 0.105 0.895 16 C 0.154 3.846 17 N -0.596 5.596 18 C -0.331 4.331 19 H 0.065 0.935 20 C -0.026 4.026 21 N -0.918 5.918 22 Si 1.072 2.928 23 H -0.293 1.293 24 H -0.292 1.292 25 H -0.285 1.285 26 C 0.166 3.834 27 C -0.177 4.177 28 H 0.106 0.894 29 C -0.114 4.114 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.399 0.601 38 H 0.027 0.973 39 H 0.054 0.946 40 H 0.269 0.731 41 H 0.068 0.932 42 H 0.028 0.972 43 H 0.097 0.903 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.998 -19.283 10.214 24.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C 0.025 3.975 4 H 0.087 0.913 5 C -0.182 4.182 6 C -0.152 4.152 7 C -0.132 4.132 8 H 0.121 0.879 9 C 0.306 3.694 10 O -0.412 6.412 11 N -0.344 5.344 12 C -0.009 4.009 13 H 0.149 0.851 14 C -0.199 4.199 15 H 0.123 0.877 16 C 0.028 3.972 17 N -0.321 5.321 18 C -0.458 4.458 19 H 0.083 0.917 20 C -0.228 4.228 21 N -0.558 5.558 22 Si 0.901 3.099 23 H -0.221 1.221 24 H -0.219 1.219 25 H -0.211 1.211 26 C 0.040 3.960 27 C -0.198 4.198 28 H 0.124 0.876 29 C -0.152 4.152 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.233 0.767 38 H 0.045 0.955 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.046 0.954 43 H 0.116 0.884 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.014 -17.646 9.475 22.393 hybrid contribution 0.051 -1.493 0.492 1.573 sum -9.964 -19.140 9.967 23.768 Atomic orbital electron populations 1.22775 0.81191 1.02642 1.00022 1.87902 1.19584 1.27718 1.94943 1.23087 0.94884 0.84313 0.95251 0.91252 1.22991 0.98721 0.98897 0.97611 1.22288 0.96381 0.98854 0.97721 1.21857 0.99775 0.95296 0.96225 0.87887 1.20513 0.77714 0.82469 0.88669 1.90685 1.57622 1.75971 1.16942 1.45359 1.51250 1.25507 1.12316 1.21833 0.95859 0.87318 0.95861 0.85121 1.24453 0.90372 1.02174 1.02948 0.87698 1.21202 0.97583 0.85622 0.92782 1.45277 1.11687 1.01418 1.73699 1.19745 0.89265 0.86042 1.50792 0.91708 1.25903 0.99270 0.99345 0.98279 1.70736 1.12105 1.33832 1.39140 0.83447 0.74660 0.75559 0.76245 1.22058 1.21862 1.21088 1.21114 0.87531 0.93516 0.93881 1.24377 1.03428 0.91655 1.00354 0.87594 1.22185 0.92524 0.99347 1.01164 0.93952 0.89719 0.94112 0.90139 0.91174 0.90312 0.90656 0.76673 0.95537 0.92754 0.91979 0.91345 0.95431 0.88446 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.87 101.05 1.10 1.31 16 2 O -0.38 -3.79 10.41 -35.23 -0.37 -4.16 16 3 C 0.08 0.77 3.32 -25.01 -0.08 0.68 16 4 H 0.07 0.65 7.86 -51.93 -0.41 0.24 16 5 C -0.14 -1.09 6.62 -24.73 -0.16 -1.25 16 6 C -0.11 -0.87 6.29 -25.07 -0.16 -1.03 16 7 C -0.11 -1.02 3.29 -90.66 -0.30 -1.32 16 8 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 9 C 0.52 6.85 7.00 -10.99 -0.08 6.77 16 10 O -0.54 -9.30 14.77 5.55 0.08 -9.22 16 11 N -0.70 -8.78 5.50 -53.81 -0.30 -9.08 16 12 C 0.10 1.59 5.97 -67.93 -0.41 1.19 16 13 H 0.13 2.46 7.40 -51.93 -0.38 2.07 16 14 C -0.18 -3.13 7.08 -89.01 -0.63 -3.76 16 15 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 16 C 0.15 3.31 7.06 -2.19 -0.02 3.30 16 17 N -0.60 -15.33 3.22 -168.61 -0.54 -15.88 16 18 C -0.33 -9.40 10.19 -15.06 -0.15 -9.55 16 19 H 0.07 1.83 7.94 -52.49 -0.42 1.41 16 20 C -0.03 -0.75 5.12 -17.43 -0.09 -0.84 16 21 N -0.92 -27.90 12.82 55.49 0.71 -27.19 16 22 Si 1.07 25.32 29.98 -169.99 -5.10 20.23 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 26 C 0.17 3.87 5.00 -2.41 -0.01 3.85 16 27 C -0.18 -3.20 7.06 -89.22 -0.63 -3.83 16 28 H 0.11 1.72 8.14 -51.93 -0.42 1.29 16 29 C -0.11 -1.17 6.16 -25.56 -0.16 -1.33 16 30 H 0.04 0.28 8.10 -51.92 -0.42 -0.14 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.65 7.85 -51.93 -0.41 0.24 16 37 H 0.40 3.86 8.81 -40.82 -0.36 3.50 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.27 8.23 6.42 -40.82 -0.26 7.97 16 41 H 0.07 1.74 7.47 -51.93 -0.39 1.35 16 42 H 0.03 0.67 7.66 -51.93 -0.40 0.28 16 43 H 0.10 1.22 6.39 -51.93 -0.33 0.88 16 44 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 LS Contribution 354.44 15.07 5.34 5.34 Total: -1.00 -33.44 354.44 -9.16 -42.61 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -7.22 Total: 3.16 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -1.77 Total: -5.81 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.13 Total: -52.14 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.28 Total: -13.38 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.10 Total: 20.23 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.44 -9.16 -42.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025825005.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.618 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds