Wall clock time and date at job start Tue Mar 31 2020 03:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00486 * 2 1 4 4 H 1.08999 * 110.43225 * 328.91144 * 3 2 1 5 5 C 1.54894 * 110.48655 * 91.45016 * 3 2 1 6 6 C 1.54893 * 102.74620 * 156.62201 * 5 3 2 7 7 C 1.54265 * 104.19860 * 322.06033 * 6 5 3 8 8 H 1.08996 * 110.03298 * 264.27986 * 7 6 5 9 9 C 1.50693 * 110.03335 * 142.89348 * 7 6 5 10 10 O 1.21283 * 120.00526 * 242.09458 * 9 7 6 11 11 N 1.34782 * 120.00037 * 62.09191 * 9 7 6 12 12 C 1.46495 * 120.00093 * 179.97438 * 11 9 7 13 13 H 1.09004 * 115.49625 * 9.62094 * 12 11 9 14 14 C 1.52996 * 117.44500 * 224.23773 * 12 11 9 15 15 H 1.09003 * 119.54049 * 4.12205 * 14 12 11 16 16 C 1.54790 * 117.94164 * 160.75465 * 14 12 11 17 17 N 1.48150 * 104.41815 * 87.46648 * 16 14 12 18 18 C 1.36933 * 127.83528 * 140.36727 * 17 16 14 19 19 H 1.07998 * 120.00773 * 338.37365 * 18 17 16 20 20 C 1.38819 * 119.99655 * 158.37879 * 18 17 16 21 21 N 1.31615 * 120.00000 * 335.54352 * 20 18 17 22 22 Si 1.86803 * 120.00006 * 155.55040 * 20 18 17 23 23 H 1.48499 * 109.47195 * 89.99634 * 22 20 18 24 24 H 1.48507 * 109.46994 * 329.99965 * 22 20 18 25 25 H 1.48494 * 109.47086 * 210.00046 * 22 20 18 26 26 C 1.48141 * 104.32133 * 320.11100 * 17 16 14 27 27 C 1.53002 * 117.44354 * 154.99762 * 12 11 9 28 28 H 1.09001 * 119.53801 * 354.28485 * 27 12 11 29 29 C 1.53877 * 106.63965 * 23.58479 * 7 6 5 30 30 H 1.09011 * 109.46720 * 60.00076 * 1 2 3 31 31 H 1.09000 * 109.47467 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47256 * 300.00497 * 1 2 3 33 33 H 1.09000 * 110.75433 * 38.31294 * 5 3 2 34 34 H 1.08994 * 110.75493 * 274.93864 * 5 3 2 35 35 H 1.09001 * 110.48539 * 203.38109 * 6 5 3 36 36 H 1.09003 * 110.59561 * 80.79506 * 6 5 3 37 37 H 0.97002 * 119.99655 * 359.97438 * 11 9 7 38 38 H 1.08999 * 110.54193 * 328.72949 * 16 14 12 39 39 H 1.08999 * 110.46666 * 206.16921 * 16 14 12 40 40 H 0.97003 * 120.00000 * 354.38840 * 21 20 18 41 41 H 1.09001 * 110.40844 * 158.63097 * 26 17 16 42 42 H 1.09003 * 110.40914 * 280.93898 * 26 17 16 43 43 H 1.09001 * 110.03273 * 119.30987 * 29 7 6 44 44 H 1.08997 * 110.03234 * 240.73896 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3660 2.0089 -0.5274 5 6 2.2644 1.7857 1.4505 6 6 3.3851 2.8396 1.2702 7 6 4.2882 2.2468 0.1690 8 1 5.1254 1.7136 0.6195 9 6 4.7986 3.3456 -0.7271 10 8 4.5096 3.3511 -1.9050 11 7 5.5762 4.3225 -0.2196 12 6 6.0728 5.3904 -1.0908 13 1 5.6415 5.4183 -2.0915 14 6 7.5413 5.7943 -0.9444 15 1 8.1846 5.2425 -0.2591 16 6 8.2021 6.5629 -2.1143 17 7 7.9044 7.9870 -1.8349 18 6 8.7299 9.0665 -2.0034 19 1 9.8003 8.9275 -2.0385 20 6 8.1908 10.3395 -2.1291 21 7 6.9578 10.4921 -2.5635 22 14 9.2154 11.8361 -1.6818 23 1 9.9592 12.3026 -2.8794 24 1 10.1785 11.4744 -0.6108 25 1 8.3231 12.9207 -1.1996 26 6 6.5088 7.9789 -1.3380 27 6 6.4233 6.7284 -0.4366 28 1 6.2097 6.8817 0.6212 29 6 3.4151 1.2707 -0.6389 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.6065 0.9612 2.0760 34 1 1.3677 2.2430 1.8686 35 1 3.9450 2.9634 2.1971 36 1 2.9666 3.7931 0.9481 37 1 5.8070 4.3184 0.7226 38 1 7.7633 6.2624 -3.0657 39 1 9.2790 6.3940 -2.1212 40 1 6.4539 9.7231 -2.8728 41 1 6.3064 8.8797 -0.7585 42 1 5.8094 7.8983 -2.1702 43 1 3.3606 1.5918 -1.6791 44 1 3.8281 0.2637 -0.5798 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025825005.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:01 Heat of formation + Delta-G solvation = -56.648251 kcal Electronic energy + Delta-G solvation = -23494.775589 eV Core-core repulsion = 20026.425786 eV Total energy + Delta-G solvation = -3468.349803 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.52229 -40.39669 -39.24983 -36.74026 -36.32616 -34.47390 -32.10980 -29.98116 -29.55514 -29.15661 -27.43307 -26.89949 -24.15889 -22.73488 -22.03970 -21.76710 -21.05668 -20.55815 -19.54269 -18.56874 -17.86584 -17.57766 -16.80998 -16.25499 -15.99841 -15.80652 -15.72135 -15.39224 -15.33300 -15.00775 -14.61025 -14.35371 -13.92972 -13.62332 -13.60808 -13.28467 -12.77514 -12.64501 -12.57180 -12.52076 -12.33457 -12.29533 -12.22763 -11.90584 -11.86279 -11.72419 -11.65422 -11.55432 -11.00549 -10.80635 -10.63293 -10.48190 -9.81224 -9.12743 -8.40913 -5.43684 1.47743 1.57128 1.65881 1.83750 1.88949 2.60968 2.72216 2.80517 3.16091 3.40386 3.45729 3.53412 3.65315 3.69685 3.78799 3.98851 4.16841 4.23478 4.26334 4.31397 4.37633 4.43008 4.45968 4.53833 4.60416 4.67283 4.67627 4.76235 4.83137 4.86688 4.95774 4.96795 5.02135 5.07508 5.14349 5.19314 5.24772 5.27768 5.46190 5.60304 6.22757 6.27481 6.47995 6.76930 7.18087 7.60868 8.27926 8.94751 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.041519 B = 0.002550 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.225655 B =10975.963924 C =11091.710312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.079 3.921 4 H 0.060 0.940 5 C -0.136 4.136 6 C -0.110 4.110 7 C -0.098 4.098 8 H 0.134 0.866 9 C 0.518 3.482 10 O -0.584 6.584 11 N -0.679 5.679 12 C 0.118 3.882 13 H 0.102 0.898 14 C -0.163 4.163 15 H 0.140 0.860 16 C 0.146 3.854 17 N -0.622 5.622 18 C -0.340 4.340 19 H 0.064 0.936 20 C -0.081 4.081 21 N -0.947 5.947 22 Si 1.126 2.874 23 H -0.281 1.281 24 H -0.271 1.271 25 H -0.288 1.288 26 C 0.168 3.832 27 C -0.171 4.171 28 H 0.136 0.864 29 C -0.117 4.117 30 H 0.041 0.959 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.109 0.891 36 H 0.064 0.936 37 H 0.420 0.580 38 H 0.014 0.986 39 H 0.060 0.940 40 H 0.252 0.748 41 H 0.039 0.961 42 H 0.003 0.997 43 H 0.067 0.933 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.394 -20.751 13.216 26.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C 0.021 3.979 4 H 0.078 0.922 5 C -0.174 4.174 6 C -0.147 4.147 7 C -0.120 4.120 8 H 0.152 0.848 9 C 0.307 3.693 10 O -0.463 6.463 11 N -0.329 5.329 12 C 0.011 3.989 13 H 0.120 0.880 14 C -0.184 4.184 15 H 0.157 0.843 16 C 0.021 3.979 17 N -0.347 5.347 18 C -0.468 4.468 19 H 0.082 0.918 20 C -0.276 4.276 21 N -0.590 5.590 22 Si 0.948 3.052 23 H -0.208 1.208 24 H -0.196 1.196 25 H -0.214 1.214 26 C 0.042 3.958 27 C -0.192 4.192 28 H 0.154 0.846 29 C -0.155 4.155 30 H 0.059 0.941 31 H 0.116 0.884 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.127 0.873 36 H 0.082 0.918 37 H 0.258 0.742 38 H 0.032 0.968 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.021 0.979 43 H 0.085 0.915 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.405 -19.168 12.517 24.750 hybrid contribution -0.193 -1.138 -0.561 1.283 sum -9.598 -20.306 11.956 25.444 Atomic orbital electron populations 1.22944 0.79868 1.03776 1.00592 1.87862 1.21113 1.28009 1.95131 1.23106 0.94095 0.84131 0.96570 0.92191 1.22946 0.99203 0.99067 0.96150 1.22327 0.96225 0.98105 0.98084 1.21892 1.00769 0.93642 0.95656 0.84845 1.21275 0.76696 0.82823 0.88498 1.90685 1.59172 1.77056 1.19388 1.45150 1.50799 1.24130 1.12840 1.21339 0.94947 0.87445 0.95189 0.88020 1.24325 0.90858 1.01757 1.01418 0.84259 1.21331 0.98391 0.84173 0.94041 1.45581 1.12174 1.02541 1.74394 1.20062 0.89772 0.87226 1.49766 0.91799 1.27427 0.99659 1.02589 0.97973 1.70866 1.13341 1.33031 1.41726 0.82747 0.73551 0.72024 0.76838 1.20792 1.19642 1.21438 1.20937 0.86165 0.95022 0.93633 1.24128 1.04643 0.89748 1.00682 0.84596 1.22156 0.93751 0.99768 0.99827 0.94052 0.88380 0.92885 0.89235 0.90118 0.87288 0.91755 0.74200 0.96792 0.92109 0.93760 0.94226 0.97883 0.91462 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.87 113.37 1.23 1.54 16 2 O -0.40 -7.47 10.41 -148.98 -1.55 -9.02 16 3 C 0.08 1.37 3.32 31.71 0.11 1.47 16 4 H 0.06 1.12 7.86 -2.39 -0.02 1.10 16 5 C -0.14 -1.63 6.62 31.89 0.21 -1.42 16 6 C -0.11 -1.28 6.29 31.67 0.20 -1.08 16 7 C -0.10 -1.56 3.29 -10.82 -0.04 -1.60 16 8 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 9 C 0.52 12.82 7.00 87.65 0.61 13.43 16 10 O -0.58 -20.49 14.77 -3.04 -0.04 -20.53 16 11 N -0.68 -15.27 5.50 -442.54 -2.43 -17.70 16 12 C 0.12 3.73 5.97 44.99 0.27 4.00 16 13 H 0.10 3.92 7.40 -2.38 -0.02 3.90 16 14 C -0.16 -5.38 7.08 -9.75 -0.07 -5.45 16 15 H 0.14 3.75 8.14 -2.39 -0.02 3.73 16 16 C 0.15 6.28 7.06 86.67 0.61 6.89 16 17 N -0.62 -32.63 3.22 -687.36 -2.21 -34.84 16 18 C -0.34 -19.62 10.19 84.04 0.86 -18.76 16 19 H 0.06 3.61 7.94 -2.91 -0.02 3.59 16 20 C -0.08 -4.73 5.12 84.86 0.43 -4.30 16 21 N -0.95 -59.59 12.82 21.65 0.28 -59.32 16 22 Si 1.13 51.28 29.98 68.60 2.06 53.33 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 26 C 0.17 8.11 5.00 86.53 0.43 8.55 16 27 C -0.17 -5.97 7.06 -9.89 -0.07 -6.04 16 28 H 0.14 3.98 8.14 -2.39 -0.02 3.96 16 29 C -0.12 -2.28 6.16 31.36 0.19 -2.09 16 30 H 0.04 0.52 8.10 -2.38 -0.02 0.50 16 31 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.06 0.93 7.85 -2.39 -0.02 0.91 16 37 H 0.42 6.20 8.81 -92.71 -0.82 5.38 16 38 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.25 16.28 6.42 -92.71 -0.59 15.68 16 41 H 0.04 2.10 7.47 -2.39 -0.02 2.08 16 42 H 0.00 0.18 7.66 -2.39 -0.02 0.16 16 43 H 0.07 1.73 6.39 -2.39 -0.02 1.72 16 44 H 0.09 1.57 8.07 -2.39 -0.02 1.55 16 Total: -1.00 -76.40 354.44 1.42 -74.98 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.35 Total: 17.96 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 4.98 Total: -4.86 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -4.37 Total: -111.86 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -1.60 Total: -29.55 kcal Atomic # 14 Polarization: 51.28 SS G_CDS: 2.06 Total: 53.33 kcal Total: -76.40 1.42 -74.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025825005.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.328 kcal (2) G-P(sol) polarization free energy of solvation -76.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds