Wall clock time and date at job start Tue Mar 31 2020 03:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00026 * 2 1 4 4 H 1.09005 * 110.05761 * 29.95690 * 3 2 1 5 5 C 1.54270 * 110.03030 * 268.54405 * 3 2 1 6 6 C 1.54885 * 104.19309 * 217.10249 * 5 3 2 7 7 C 1.54891 * 102.74820 * 37.94487 * 6 5 3 8 8 H 1.09001 * 110.48537 * 80.86588 * 7 6 5 9 9 C 1.50700 * 110.48700 * 203.37359 * 7 6 5 10 10 O 1.21280 * 119.99867 * 118.54563 * 9 7 6 11 11 N 1.34778 * 120.00310 * 298.54853 * 9 7 6 12 12 C 1.46500 * 119.99924 * 179.97438 * 11 9 7 13 13 H 1.08995 * 115.49634 * 9.61984 * 12 11 9 14 14 C 1.53008 * 117.43834 * 224.23772 * 12 11 9 15 15 H 1.08998 * 120.26459 * 3.83087 * 14 12 11 16 16 C 1.54390 * 118.11726 * 160.80795 * 14 12 11 17 17 N 1.48154 * 104.61423 * 87.19498 * 16 14 12 18 18 C 1.36929 * 127.83525 * 140.41401 * 17 16 14 19 19 H 1.08008 * 119.99386 * 195.58718 * 18 17 16 20 20 C 1.38805 * 120.00524 * 15.58995 * 18 17 16 21 21 N 1.31618 * 120.00038 * 9.01652 * 20 18 17 22 22 Si 1.86805 * 120.00142 * 189.01692 * 20 18 17 23 23 H 1.48493 * 109.47170 * 94.45789 * 22 20 18 24 24 H 1.48506 * 109.46901 * 214.45792 * 22 20 18 25 25 H 1.48495 * 109.47076 * 334.45362 * 22 20 18 26 26 C 1.48149 * 104.32084 * 320.40905 * 17 16 14 27 27 C 1.53001 * 117.43951 * 155.00129 * 12 11 9 28 28 H 1.08997 * 120.26375 * 356.16759 * 27 12 11 29 29 C 1.53867 * 110.03197 * 151.37839 * 3 2 1 30 30 H 1.09003 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47514 * 300.00759 * 1 2 3 32 32 H 1.09011 * 109.46867 * 60.00255 * 1 2 3 33 33 H 1.09004 * 110.48334 * 98.42869 * 5 3 2 34 34 H 1.08992 * 110.48736 * 335.78328 * 5 3 2 35 35 H 1.09000 * 110.75892 * 279.62869 * 6 5 3 36 36 H 1.09010 * 110.91250 * 156.32935 * 6 5 3 37 37 H 0.97004 * 119.99826 * 0.02562 * 11 9 7 38 38 H 1.08994 * 110.41211 * 328.40597 * 16 14 12 39 39 H 1.09002 * 110.50437 * 206.02171 * 16 14 12 40 40 H 0.97002 * 120.00380 * 180.02562 * 21 20 18 41 41 H 1.08996 * 110.40847 * 280.80166 * 26 17 16 42 42 H 1.09001 * 110.50316 * 158.42219 * 26 17 16 43 43 H 1.08997 * 110.03653 * 359.97438 * 29 3 2 44 44 H 1.09004 * 110.03585 * 238.56707 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3519 2.0078 0.5113 5 6 2.2588 1.7732 -1.4489 6 6 3.5954 2.5522 -1.3725 7 6 4.4192 1.7188 -0.3597 8 1 4.8656 0.8541 -0.8508 9 6 5.4862 2.5699 0.2792 10 8 5.4794 2.7520 1.4783 11 7 6.4481 3.1286 -0.4817 12 6 7.4850 3.9564 0.1394 13 1 7.5081 3.9403 1.2290 14 6 7.8469 5.2713 -0.5543 15 1 7.2991 5.5944 -1.4395 16 6 8.5737 6.3540 0.2723 17 7 10.0116 6.0220 0.1411 18 6 11.0625 6.8862 -0.0128 19 1 12.0213 6.5166 -0.3456 20 6 10.8958 8.2372 0.2589 21 7 9.7890 8.6617 0.8308 22 14 12.2423 9.4528 -0.1870 23 1 11.9589 10.0375 -1.5223 24 1 12.2875 10.5357 0.8281 25 1 13.5507 8.7515 -0.2213 26 6 10.0543 4.5429 0.2142 27 6 8.8232 4.0772 -0.5925 28 1 9.0026 3.5107 -1.5063 29 6 3.3839 1.2708 0.6925 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.4538 2.4286 -1.7816 34 1 2.3543 0.9161 -2.1154 35 1 3.4325 3.5631 -0.9990 36 1 4.0881 2.5758 -2.3446 37 1 6.4533 2.9833 -1.4408 38 1 8.2661 6.3051 1.3168 39 1 8.3736 7.3446 -0.1361 40 1 9.6722 9.6058 1.0204 41 1 9.9780 4.2112 1.2496 42 1 10.9708 4.1646 -0.2387 43 1 3.6070 0.2584 1.0290 44 1 3.3922 1.9564 1.5399 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025825006.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:04 Heat of formation + Delta-G solvation = -31.074224 kcal Electronic energy + Delta-G solvation = -23427.554572 eV Core-core repulsion = 19960.313743 eV Total energy + Delta-G solvation = -3467.240830 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.30967 -39.02691 -38.15052 -35.88229 -34.47437 -32.63785 -30.38652 -29.19418 -28.75207 -27.14783 -26.43916 -25.58347 -22.86186 -21.42453 -20.80154 -20.43290 -19.59358 -19.25245 -17.61335 -16.94074 -16.80849 -16.29461 -15.90954 -15.22232 -14.81647 -14.69306 -14.46283 -14.08553 -13.64103 -13.53225 -13.20991 -12.77153 -12.66271 -12.22325 -12.14754 -11.82516 -11.73710 -11.55042 -11.50384 -11.35225 -11.06999 -10.98920 -10.84396 -10.83918 -10.40281 -10.18498 -10.15869 -9.87649 -9.74937 -9.67987 -9.16330 -8.74837 -8.32312 -6.87291 -5.79762 -3.14460 2.64591 3.11783 3.38102 3.43240 3.45617 3.48936 4.16770 4.21034 4.32294 4.45999 4.56700 4.85483 4.96339 5.02612 5.06703 5.12665 5.16015 5.18343 5.27000 5.30865 5.37427 5.39305 5.44205 5.57282 5.58092 5.61147 5.78260 5.83264 5.90232 5.92648 6.05681 6.17385 6.26536 6.51842 6.68391 6.82572 6.88794 6.92800 7.36442 7.53817 7.60038 7.71590 8.20396 8.30430 9.10573 9.73289 10.50358 11.34492 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.045010 B = 0.002512 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.928010 B =11145.225256 C =11280.993774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.083 3.917 4 H 0.067 0.933 5 C -0.145 4.145 6 C -0.113 4.113 7 C -0.111 4.111 8 H 0.104 0.896 9 C 0.521 3.479 10 O -0.537 6.537 11 N -0.696 5.696 12 C 0.099 3.901 13 H 0.131 0.869 14 C -0.182 4.182 15 H 0.102 0.898 16 C 0.184 3.816 17 N -0.593 5.593 18 C -0.227 4.227 19 H 0.077 0.923 20 C -0.006 4.006 21 N -0.915 5.915 22 Si 0.914 3.086 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.155 3.845 27 C -0.184 4.184 28 H 0.103 0.897 29 C -0.109 4.109 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.398 0.602 38 H 0.026 0.974 39 H 0.091 0.909 40 H 0.255 0.745 41 H 0.027 0.973 42 H 0.052 0.948 43 H 0.082 0.918 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.101 -15.700 -6.141 24.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.303 6.303 3 C 0.025 3.975 4 H 0.085 0.915 5 C -0.182 4.182 6 C -0.151 4.151 7 C -0.132 4.132 8 H 0.122 0.878 9 C 0.307 3.693 10 O -0.414 6.414 11 N -0.345 5.345 12 C -0.006 4.006 13 H 0.149 0.851 14 C -0.204 4.204 15 H 0.120 0.880 16 C 0.058 3.942 17 N -0.317 5.317 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.561 5.561 22 Si 0.744 3.256 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.205 1.205 26 C 0.029 3.971 27 C -0.206 4.206 28 H 0.121 0.879 29 C -0.146 4.146 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.232 0.768 38 H 0.044 0.956 39 H 0.109 0.891 40 H 0.065 0.935 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.101 0.899 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.887 -15.465 -5.218 23.486 hybrid contribution 0.421 0.797 -0.923 1.290 sum -16.467 -14.668 -6.141 22.891 Atomic orbital electron populations 1.22773 0.81345 1.02619 0.99933 1.87953 1.19456 1.27898 1.94977 1.22871 0.95000 0.84297 0.95346 0.91533 1.22886 0.97529 1.00408 0.97415 1.22447 0.95033 0.98990 0.98655 1.22106 0.94821 0.98674 0.97647 0.87802 1.20447 0.81912 0.79680 0.87220 1.90699 1.74784 1.61010 1.14871 1.45391 1.27656 1.50720 1.10694 1.21844 0.87618 0.93739 0.97440 0.85110 1.24713 1.01505 0.91168 1.02970 0.88037 1.21063 0.82295 0.95529 0.95278 1.45193 1.02544 0.99294 1.84648 1.19006 0.90393 0.88077 1.38041 0.90498 1.24914 0.97947 0.97612 0.99865 1.69902 1.26266 1.14404 1.45515 0.86080 0.80938 0.80947 0.77660 1.21557 1.21653 1.20479 1.21117 0.93528 0.86532 0.95955 1.24308 0.91384 1.02820 1.02058 0.87888 1.22131 0.91001 1.03634 0.97873 0.89779 0.94022 0.94145 0.91179 0.90164 0.90482 0.90403 0.76799 0.95644 0.89109 0.93528 0.95544 0.92984 0.89925 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.85 101.05 1.10 1.29 16 2 O -0.38 -3.69 10.26 -35.23 -0.36 -4.05 16 3 C 0.08 0.73 3.38 -25.62 -0.09 0.65 16 4 H 0.07 0.55 7.82 -51.93 -0.41 0.14 16 5 C -0.14 -1.08 6.55 -25.07 -0.16 -1.24 16 6 C -0.11 -0.91 6.26 -24.74 -0.15 -1.06 16 7 C -0.11 -1.09 3.25 -90.11 -0.29 -1.38 16 8 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 9 C 0.52 7.14 7.15 -10.98 -0.08 7.06 16 10 O -0.54 -9.64 15.02 5.56 0.08 -9.56 16 11 N -0.70 -9.15 5.50 -53.80 -0.30 -9.45 16 12 C 0.10 1.68 5.98 -67.93 -0.41 1.27 16 13 H 0.13 2.53 7.40 -51.93 -0.38 2.15 16 14 C -0.18 -3.46 7.06 -89.21 -0.63 -4.09 16 15 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 16 C 0.18 4.49 5.70 -2.40 -0.01 4.47 16 17 N -0.59 -15.30 3.38 -168.86 -0.57 -15.87 16 18 C -0.23 -6.34 10.35 -15.07 -0.16 -6.49 16 19 H 0.08 2.07 7.85 -52.48 -0.41 1.66 16 20 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 21 N -0.91 -26.96 10.86 55.49 0.60 -26.35 16 22 Si 0.91 21.95 29.56 -169.99 -5.03 16.93 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 C 0.16 3.28 7.04 -2.41 -0.02 3.27 16 27 C -0.18 -3.24 7.06 -89.22 -0.63 -3.87 16 28 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 29 C -0.11 -1.13 5.97 -25.62 -0.15 -1.28 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.04 0.25 8.10 -51.93 -0.42 -0.17 16 32 H 0.04 0.22 8.14 -51.92 -0.42 -0.20 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 35 H 0.08 0.69 8.05 -51.93 -0.42 0.27 16 36 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.40 4.04 8.81 -40.82 -0.36 3.68 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 2.45 6.50 -51.93 -0.34 2.12 16 40 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.08 0.88 7.95 -51.93 -0.41 0.47 16 44 H 0.09 1.14 6.90 -51.93 -0.36 0.78 16 LS Contribution 355.09 15.07 5.35 5.35 Total: -1.00 -32.58 355.09 -9.29 -41.87 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.29 Total: 2.82 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.78 Total: -1.68 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.26 Total: -51.67 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.28 Total: -13.61 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.58 -9.29 -41.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025825006.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.792 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds