Wall clock time and date at job start Tue Mar 31 2020 03:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00026 * 2 1 4 4 H 1.09005 * 110.05761 * 29.95690 * 3 2 1 5 5 C 1.54270 * 110.03030 * 268.54405 * 3 2 1 6 6 C 1.54885 * 104.19309 * 217.10249 * 5 3 2 7 7 C 1.54891 * 102.74820 * 37.94487 * 6 5 3 8 8 H 1.09001 * 110.48537 * 80.86588 * 7 6 5 9 9 C 1.50700 * 110.48700 * 203.37359 * 7 6 5 10 10 O 1.21280 * 119.99867 * 118.54563 * 9 7 6 11 11 N 1.34778 * 120.00310 * 298.54853 * 9 7 6 12 12 C 1.46500 * 119.99924 * 179.97438 * 11 9 7 13 13 H 1.08995 * 115.49634 * 9.61984 * 12 11 9 14 14 C 1.53008 * 117.43834 * 224.23772 * 12 11 9 15 15 H 1.08998 * 120.26459 * 3.83087 * 14 12 11 16 16 C 1.54390 * 118.11726 * 160.80795 * 14 12 11 17 17 N 1.48154 * 104.61423 * 87.19498 * 16 14 12 18 18 C 1.36929 * 127.83525 * 140.41401 * 17 16 14 19 19 H 1.08008 * 119.99386 * 195.58718 * 18 17 16 20 20 C 1.38805 * 120.00524 * 15.58995 * 18 17 16 21 21 N 1.31618 * 120.00038 * 9.01652 * 20 18 17 22 22 Si 1.86805 * 120.00142 * 189.01692 * 20 18 17 23 23 H 1.48493 * 109.47170 * 94.45789 * 22 20 18 24 24 H 1.48506 * 109.46901 * 214.45792 * 22 20 18 25 25 H 1.48495 * 109.47076 * 334.45362 * 22 20 18 26 26 C 1.48149 * 104.32084 * 320.40905 * 17 16 14 27 27 C 1.53001 * 117.43951 * 155.00129 * 12 11 9 28 28 H 1.08997 * 120.26375 * 356.16759 * 27 12 11 29 29 C 1.53867 * 110.03197 * 151.37839 * 3 2 1 30 30 H 1.09003 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47514 * 300.00759 * 1 2 3 32 32 H 1.09011 * 109.46867 * 60.00255 * 1 2 3 33 33 H 1.09004 * 110.48334 * 98.42869 * 5 3 2 34 34 H 1.08992 * 110.48736 * 335.78328 * 5 3 2 35 35 H 1.09000 * 110.75892 * 279.62869 * 6 5 3 36 36 H 1.09010 * 110.91250 * 156.32935 * 6 5 3 37 37 H 0.97004 * 119.99826 * 0.02562 * 11 9 7 38 38 H 1.08994 * 110.41211 * 328.40597 * 16 14 12 39 39 H 1.09002 * 110.50437 * 206.02171 * 16 14 12 40 40 H 0.97002 * 120.00380 * 180.02562 * 21 20 18 41 41 H 1.08996 * 110.40847 * 280.80166 * 26 17 16 42 42 H 1.09001 * 110.50316 * 158.42219 * 26 17 16 43 43 H 1.08997 * 110.03653 * 359.97438 * 29 3 2 44 44 H 1.09004 * 110.03585 * 238.56707 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3519 2.0078 0.5113 5 6 2.2588 1.7732 -1.4489 6 6 3.5954 2.5522 -1.3725 7 6 4.4192 1.7188 -0.3597 8 1 4.8656 0.8541 -0.8508 9 6 5.4862 2.5699 0.2792 10 8 5.4794 2.7520 1.4783 11 7 6.4481 3.1286 -0.4817 12 6 7.4850 3.9564 0.1394 13 1 7.5081 3.9403 1.2290 14 6 7.8469 5.2713 -0.5543 15 1 7.2991 5.5944 -1.4395 16 6 8.5737 6.3540 0.2723 17 7 10.0116 6.0220 0.1411 18 6 11.0625 6.8862 -0.0128 19 1 12.0213 6.5166 -0.3456 20 6 10.8958 8.2372 0.2589 21 7 9.7890 8.6617 0.8308 22 14 12.2423 9.4528 -0.1870 23 1 11.9589 10.0375 -1.5223 24 1 12.2875 10.5357 0.8281 25 1 13.5507 8.7515 -0.2213 26 6 10.0543 4.5429 0.2142 27 6 8.8232 4.0772 -0.5925 28 1 9.0026 3.5107 -1.5063 29 6 3.3839 1.2708 0.6925 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.4538 2.4286 -1.7816 34 1 2.3543 0.9161 -2.1154 35 1 3.4325 3.5631 -0.9990 36 1 4.0881 2.5758 -2.3446 37 1 6.4533 2.9833 -1.4408 38 1 8.2661 6.3051 1.3168 39 1 8.3736 7.3446 -0.1361 40 1 9.6722 9.6058 1.0204 41 1 9.9780 4.2112 1.2496 42 1 10.9708 4.1646 -0.2387 43 1 3.6070 0.2584 1.0290 44 1 3.3922 1.9564 1.5399 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025825006.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:03 Heat of formation + Delta-G solvation = -52.943715 kcal Electronic energy + Delta-G solvation = -23428.502905 eV Core-core repulsion = 19960.313743 eV Total energy + Delta-G solvation = -3468.189162 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.40780 -40.25964 -39.24637 -36.64974 -36.08792 -34.32555 -32.17332 -29.95800 -29.52417 -28.93043 -27.59671 -26.91767 -24.15396 -22.75975 -21.97377 -21.55418 -20.90491 -20.59144 -18.88282 -18.51064 -17.70659 -17.54648 -16.75782 -16.69426 -16.03403 -15.68890 -15.60160 -15.34847 -14.90857 -14.72682 -14.64330 -14.30118 -13.77839 -13.44059 -13.29182 -13.22543 -12.92015 -12.86252 -12.72854 -12.44777 -12.28718 -12.16724 -12.12150 -12.02844 -11.88898 -11.73463 -11.66135 -11.51270 -10.92541 -10.80734 -10.67945 -10.48504 -9.71213 -8.94107 -7.92584 -5.30160 1.46456 1.48248 1.53650 1.57918 1.96734 2.47939 2.83810 2.87846 3.27372 3.41579 3.52040 3.59444 3.75543 3.85146 3.94098 4.12516 4.23055 4.30365 4.37602 4.41106 4.45955 4.48673 4.53118 4.56848 4.62295 4.74265 4.83205 4.89961 4.90892 4.96186 4.98404 5.04147 5.11091 5.24646 5.27811 5.30714 5.41897 5.45015 5.55772 5.63260 6.15359 6.32457 6.54218 6.98704 7.24113 7.66009 8.44436 9.21361 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.045010 B = 0.002512 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.928010 B =11145.225256 C =11280.993774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.404 6.404 3 C 0.082 3.918 4 H 0.068 0.932 5 C -0.136 4.136 6 C -0.109 4.109 7 C -0.100 4.100 8 H 0.130 0.870 9 C 0.520 3.480 10 O -0.586 6.586 11 N -0.680 5.680 12 C 0.119 3.881 13 H 0.102 0.898 14 C -0.186 4.186 15 H 0.124 0.876 16 C 0.188 3.812 17 N -0.618 5.618 18 C -0.240 4.240 19 H 0.085 0.915 20 C -0.066 4.066 21 N -0.950 5.950 22 Si 0.984 3.016 23 H -0.284 1.284 24 H -0.296 1.296 25 H -0.265 1.265 26 C 0.147 3.853 27 C -0.159 4.159 28 H 0.142 0.858 29 C -0.111 4.111 30 H 0.095 0.905 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.419 0.581 38 H -0.009 1.009 39 H 0.057 0.943 40 H 0.250 0.750 41 H 0.017 0.983 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.520 -17.371 -8.928 26.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C 0.025 3.975 4 H 0.086 0.914 5 C -0.174 4.174 6 C -0.147 4.147 7 C -0.122 4.122 8 H 0.148 0.852 9 C 0.308 3.692 10 O -0.465 6.465 11 N -0.330 5.330 12 C 0.012 3.988 13 H 0.120 0.880 14 C -0.207 4.207 15 H 0.142 0.858 16 C 0.062 3.938 17 N -0.342 5.342 18 C -0.368 4.368 19 H 0.103 0.897 20 C -0.259 4.259 21 N -0.598 5.598 22 Si 0.811 3.189 23 H -0.211 1.211 24 H -0.223 1.223 25 H -0.189 1.189 26 C 0.021 3.979 27 C -0.180 4.180 28 H 0.160 0.840 29 C -0.149 4.149 30 H 0.114 0.886 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.122 0.878 37 H 0.257 0.743 38 H 0.009 0.991 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.035 0.965 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.315 -17.187 -8.051 25.691 hybrid contribution 0.515 1.249 0.057 1.353 sum -16.800 -15.937 -7.994 24.498 Atomic orbital electron populations 1.22948 0.79901 1.03689 1.00691 1.87913 1.21097 1.28172 1.95156 1.22857 0.93989 0.84335 0.96368 0.91396 1.22840 0.97566 1.00742 0.96228 1.22482 0.95154 0.97987 0.99057 1.22128 0.93427 0.98937 0.97660 0.85237 1.21208 0.82117 0.79209 0.86648 1.90694 1.75857 1.62693 1.17267 1.45181 1.26431 1.49634 1.11709 1.21353 0.88540 0.92789 0.96153 0.88050 1.24390 1.02912 0.90262 1.03159 0.85812 1.20778 0.82950 0.95986 0.94070 1.45510 1.02636 1.01209 1.84809 1.19427 0.91306 0.88815 1.37294 0.89745 1.25812 1.00347 0.99487 1.00277 1.70114 1.28334 1.14265 1.47059 0.84989 0.78682 0.78203 0.76999 1.21062 1.22271 1.18935 1.21283 0.96099 0.84212 0.96309 1.24223 0.89559 1.01740 1.02497 0.83991 1.22095 0.92641 1.02555 0.97654 0.88644 0.93754 0.92896 0.89805 0.89396 0.91617 0.87789 0.74318 0.99097 0.92426 0.94118 0.96504 0.91475 0.90557 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.85 113.37 1.23 1.50 16 2 O -0.40 -7.10 10.26 -148.98 -1.53 -8.62 16 3 C 0.08 1.33 3.38 31.32 0.11 1.44 16 4 H 0.07 1.05 7.82 -2.38 -0.02 1.03 16 5 C -0.14 -1.61 6.55 31.67 0.21 -1.40 16 6 C -0.11 -1.39 6.26 31.88 0.20 -1.19 16 7 C -0.10 -1.74 3.25 -10.47 -0.03 -1.77 16 8 H 0.13 1.65 8.14 -2.39 -0.02 1.64 16 9 C 0.52 13.57 7.15 87.66 0.63 14.19 16 10 O -0.59 -21.39 15.02 -3.03 -0.05 -21.43 16 11 N -0.68 -16.18 5.50 -442.52 -2.44 -18.62 16 12 C 0.12 3.90 5.98 44.99 0.27 4.17 16 13 H 0.10 4.03 7.40 -2.39 -0.02 4.02 16 14 C -0.19 -6.91 7.06 -9.88 -0.07 -6.98 16 15 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 16 C 0.19 9.53 5.70 86.53 0.49 10.02 16 17 N -0.62 -32.37 3.38 -688.14 -2.33 -34.69 16 18 C -0.24 -13.52 10.35 84.03 0.87 -12.65 16 19 H 0.08 4.50 7.85 -2.91 -0.02 4.48 16 20 C -0.07 -3.77 5.40 84.86 0.46 -3.31 16 21 N -0.95 -58.11 10.86 21.65 0.24 -57.88 16 22 Si 0.98 45.65 29.56 68.60 2.03 47.67 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 25 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 26 C 0.15 6.11 7.04 86.53 0.61 6.72 16 27 C -0.16 -5.25 7.06 -9.89 -0.07 -5.32 16 28 H 0.14 3.67 8.14 -2.39 -0.02 3.65 16 29 C -0.11 -2.25 5.97 31.31 0.19 -2.06 16 30 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.04 0.47 8.10 -2.39 -0.02 0.45 16 32 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.09 0.95 8.08 -2.39 -0.02 0.93 16 35 H 0.07 1.02 8.05 -2.39 -0.02 1.00 16 36 H 0.10 0.83 8.14 -2.38 -0.02 0.82 16 37 H 0.42 6.70 8.81 -92.71 -0.82 5.88 16 38 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 39 H 0.06 3.27 6.50 -2.39 -0.02 3.25 16 40 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 41 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.08 1.60 7.95 -2.39 -0.02 1.58 16 44 H 0.07 1.72 6.90 -2.39 -0.02 1.71 16 Total: -1.00 -74.26 355.09 1.18 -73.08 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.17 Total: 17.13 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 5.08 Total: 3.36 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -4.53 Total: -111.18 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -1.57 Total: -30.06 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -74.26 1.18 -73.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025825006.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.137 kcal (2) G-P(sol) polarization free energy of solvation -74.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds