Wall clock time and date at job start Tue Mar 31 2020 03:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.99262 * 2 1 4 4 O 1.43748 * 109.87476 * 238.91696 * 2 1 3 5 5 C 1.44385 * 106.97502 * 214.06250 * 4 2 1 6 6 C 1.55002 * 103.48922 * 40.06149 * 5 4 2 7 7 C 1.54100 * 109.87924 * 121.08726 * 2 1 3 8 8 C 1.53004 * 110.60169 * 2.72081 * 7 2 1 9 9 C 1.50699 * 110.48698 * 240.12632 * 7 2 1 10 10 O 1.21275 * 120.00048 * 3.78180 * 9 7 2 11 11 N 1.34773 * 119.99654 * 183.50022 * 9 7 2 12 12 C 1.46507 * 119.99653 * 180.27565 * 11 9 7 13 13 H 1.09000 * 115.51544 * 350.42002 * 12 11 9 14 14 C 1.52996 * 117.44247 * 205.00066 * 12 11 9 15 15 H 1.09006 * 119.54261 * 4.12234 * 14 12 11 16 16 C 1.54386 * 118.12249 * 160.81089 * 14 12 11 17 17 N 1.48140 * 104.61842 * 87.19246 * 16 14 12 18 18 C 1.36940 * 127.84010 * 140.39529 * 17 16 14 19 19 H 1.08004 * 119.99925 * 195.59987 * 18 17 16 20 20 C 1.38812 * 119.99776 * 15.59708 * 18 17 16 21 21 N 1.31620 * 120.00328 * 9.09568 * 20 18 17 22 22 Si 1.86802 * 119.99960 * 189.09822 * 20 18 17 23 23 H 1.48502 * 109.47394 * 89.99682 * 22 20 18 24 24 H 1.48499 * 109.47328 * 209.99787 * 22 20 18 25 25 H 1.48504 * 109.47067 * 329.99647 * 22 20 18 26 26 C 1.48143 * 104.32666 * 320.41428 * 17 16 14 27 27 C 1.52997 * 117.44076 * 135.76340 * 12 11 9 28 28 H 1.09005 * 119.54400 * 355.88505 * 27 12 11 29 29 H 1.08995 * 109.47201 * 298.91239 * 1 2 3 30 30 H 1.09004 * 109.47089 * 58.91556 * 1 2 3 31 31 H 1.09004 * 109.47112 * 178.91610 * 1 2 3 32 32 H 1.08999 * 110.61810 * 281.56546 * 5 4 2 33 33 H 1.08994 * 110.62113 * 158.55964 * 5 4 2 34 34 H 1.08995 * 110.90647 * 204.78206 * 6 5 4 35 35 H 1.08996 * 110.93372 * 81.18623 * 6 5 4 36 36 H 1.08998 * 109.46559 * 298.08351 * 8 7 2 37 37 H 1.09000 * 109.46871 * 58.07450 * 8 7 2 38 38 H 1.08998 * 109.47243 * 178.07995 * 8 7 2 39 39 H 0.96996 * 120.00675 * 0.28242 * 11 9 7 40 40 H 1.09008 * 110.40916 * 205.97720 * 16 14 12 41 41 H 1.09003 * 110.40643 * 328.40781 * 16 14 12 42 42 H 0.97002 * 120.00003 * 180.02562 * 21 20 18 43 43 H 1.09001 * 110.40739 * 280.80591 * 26 17 16 44 44 H 1.08996 * 110.41227 * 158.36444 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0187 -0.6979 -1.1578 5 6 3.2379 -1.3642 -0.7649 6 6 2.9195 -1.8916 0.6575 7 6 2.0540 -0.7483 1.2410 8 6 0.8917 -1.3191 2.0561 9 6 2.8946 0.1674 2.0931 10 8 3.0143 1.3359 1.7917 11 7 3.5086 -0.3112 3.1933 12 6 4.3209 0.5804 4.0250 13 1 4.5134 1.5679 3.6055 14 6 5.4281 -0.0558 4.8677 15 1 5.6255 -1.1241 4.7777 16 6 6.5629 0.8542 5.3850 17 7 6.0545 1.3934 6.6676 18 6 6.7504 1.5923 7.8301 19 1 6.2193 1.7514 8.7570 20 6 8.1385 1.5893 7.8172 21 7 8.7860 1.5754 6.6713 22 14 9.0875 1.6051 9.4261 23 1 9.3361 0.2092 9.8679 24 1 10.3848 2.3003 9.2288 25 1 8.2961 2.3182 10.4607 26 6 4.6222 1.6684 6.4076 27 6 4.1485 0.4810 5.5419 28 1 3.3925 -0.1874 5.9543 29 1 -0.3633 0.4968 0.8995 30 1 -0.3633 0.5306 -0.8801 31 1 -0.3633 -1.0275 -0.0194 32 1 4.0684 -0.6590 -0.7357 33 1 3.4584 -2.1908 -1.4402 34 1 3.8331 -2.0225 1.2373 35 1 2.3541 -2.8222 0.6103 36 1 0.2614 -0.5034 2.4104 37 1 0.3021 -1.9878 1.4290 38 1 1.2836 -1.8726 2.9094 39 1 3.4129 -1.2458 3.4344 40 1 7.4706 0.2734 5.5499 41 1 6.7517 1.6641 4.6803 42 1 9.7559 1.5729 6.6624 43 1 4.5079 2.6054 5.8626 44 1 4.0655 1.7019 7.3441 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025921747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:56 Heat of formation + Delta-G solvation = -21.240793 kcal Electronic energy + Delta-G solvation = -24234.699942 eV Core-core repulsion = 20767.885522 eV Total energy + Delta-G solvation = -3466.814420 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.06163 -39.17482 -37.97415 -34.67588 -34.18681 -32.67886 -31.67780 -30.20415 -27.92950 -27.18594 -26.08283 -25.46702 -23.03103 -22.38527 -21.08367 -20.46841 -19.36645 -19.17589 -17.64371 -16.88009 -16.43788 -16.09884 -15.61354 -15.41959 -14.73482 -14.61504 -14.34012 -14.15668 -13.68029 -13.32776 -13.15110 -12.85682 -12.79987 -12.47593 -12.24411 -11.97331 -11.73248 -11.59272 -11.55290 -11.44392 -11.18785 -11.03909 -10.98668 -10.85965 -10.43482 -10.24814 -10.17861 -9.94276 -9.77524 -9.64166 -9.23403 -8.76822 -8.39854 -6.90368 -5.82699 -3.17281 2.49883 2.97630 3.36446 3.41683 3.43820 3.59879 4.05768 4.25481 4.37096 4.43442 4.44834 4.65501 4.84121 4.92310 5.08876 5.13165 5.22244 5.27890 5.32603 5.33403 5.35339 5.42400 5.48237 5.52767 5.61845 5.64198 5.70075 5.79240 5.86327 5.91076 6.01500 6.09940 6.17851 6.48587 6.65812 6.66752 6.74753 6.85939 7.30684 7.47871 7.49941 7.68079 8.16940 8.17158 9.07771 9.70459 10.47181 11.31645 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.037996 B = 0.003007 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.736402 B = 9308.878562 C = 9566.550135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.084 3.916 3 H 0.094 0.906 4 O -0.373 6.373 5 C 0.047 3.953 6 C -0.145 4.145 7 C -0.113 4.113 8 C -0.136 4.136 9 C 0.528 3.472 10 O -0.532 6.532 11 N -0.693 5.693 12 C 0.095 3.905 13 H 0.132 0.868 14 C -0.178 4.178 15 H 0.102 0.898 16 C 0.186 3.814 17 N -0.593 5.593 18 C -0.228 4.228 19 H 0.077 0.923 20 C -0.005 4.005 21 N -0.915 5.915 22 Si 0.914 3.086 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.155 3.845 27 C -0.184 4.184 28 H 0.102 0.898 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.398 0.602 40 H 0.092 0.908 41 H 0.026 0.974 42 H 0.255 0.745 43 H 0.028 0.972 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.064 -9.477 -12.110 21.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.026 3.974 3 H 0.112 0.888 4 O -0.292 6.292 5 C -0.030 4.030 6 C -0.183 4.183 7 C -0.117 4.117 8 C -0.193 4.193 9 C 0.314 3.686 10 O -0.409 6.409 11 N -0.341 5.341 12 C -0.011 4.011 13 H 0.149 0.851 14 C -0.200 4.200 15 H 0.120 0.880 16 C 0.060 3.940 17 N -0.316 5.316 18 C -0.356 4.356 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.561 5.561 22 Si 0.744 3.256 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.029 3.971 27 C -0.205 4.205 28 H 0.120 0.880 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.232 0.768 40 H 0.110 0.890 41 H 0.044 0.956 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.817 -8.574 -12.402 21.139 hybrid contribution 0.631 -0.658 1.214 1.518 sum -14.186 -9.231 -11.188 20.288 Atomic orbital electron populations 1.22023 0.93464 1.02650 1.02580 1.22800 0.95167 0.97008 0.82439 0.88785 1.88869 1.39470 1.67835 1.33011 1.23529 0.88178 0.96571 0.94715 1.23299 1.00226 0.97679 0.97108 1.22150 0.96697 0.96012 0.96810 1.21932 0.96555 1.01415 0.99424 1.20151 0.79342 0.88356 0.80773 1.90694 1.61913 1.17459 1.70792 1.45350 1.50035 1.12937 1.25751 1.21883 0.95828 0.95626 0.87715 0.85080 1.24693 0.93239 1.00378 1.01657 0.87998 1.21050 0.93344 0.93495 0.86159 1.45177 1.04097 1.72523 1.09819 1.19008 0.88429 1.43334 0.84871 0.90480 1.24908 0.96491 1.01670 0.97162 1.69895 1.07146 1.55671 1.23379 0.86096 0.79396 0.77620 0.82496 1.21506 1.21620 1.20514 1.21117 0.87368 0.92880 0.95768 1.24371 1.00474 1.03124 0.92575 0.87970 0.90942 0.91867 0.91691 0.91830 0.88603 0.89579 0.89225 0.91262 0.90681 0.91946 0.76754 0.89025 0.95599 0.93501 0.95464 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.41 37.16 0.31 -1.01 16 2 C 0.08 0.94 3.67 -26.16 -0.10 0.85 16 3 H 0.09 1.30 6.45 -51.93 -0.33 0.96 16 4 O -0.37 -4.40 11.19 -35.23 -0.39 -4.79 16 5 C 0.05 0.45 7.72 38.21 0.29 0.74 16 6 C -0.15 -1.20 6.23 -24.72 -0.15 -1.36 16 7 C -0.11 -1.13 0.81 -154.13 -0.13 -1.25 16 8 C -0.14 -1.03 7.19 37.16 0.27 -0.76 16 9 C 0.53 7.15 6.47 -10.99 -0.07 7.08 16 10 O -0.53 -9.40 14.83 5.56 0.08 -9.31 16 11 N -0.69 -8.89 5.20 -53.81 -0.28 -9.17 16 12 C 0.10 1.57 5.97 -67.93 -0.41 1.16 16 13 H 0.13 2.49 7.40 -51.93 -0.38 2.11 16 14 C -0.18 -3.27 7.05 -89.23 -0.63 -3.90 16 15 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 16 C 0.19 4.41 5.70 -2.41 -0.01 4.40 16 17 N -0.59 -15.09 3.38 -168.86 -0.57 -15.67 16 18 C -0.23 -6.32 10.35 -15.06 -0.16 -6.47 16 19 H 0.08 2.06 7.85 -52.48 -0.41 1.65 16 20 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16 21 N -0.91 -26.60 10.87 55.49 0.60 -26.00 16 22 Si 0.91 21.75 29.56 -169.99 -5.03 16.73 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.16 3.26 7.04 -2.41 -0.02 3.25 16 27 C -0.18 -3.21 7.06 -89.22 -0.63 -3.84 16 28 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 29 H 0.07 0.59 6.88 -51.93 -0.36 0.23 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.49 6.67 -51.93 -0.35 0.15 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.69 7.56 -51.93 -0.39 0.30 16 35 H 0.09 0.58 7.87 -51.93 -0.41 0.17 16 36 H 0.07 0.55 6.85 -51.93 -0.36 0.19 16 37 H 0.07 0.47 6.72 -51.93 -0.35 0.12 16 38 H 0.06 0.41 7.69 -51.93 -0.40 0.01 16 39 H 0.40 4.00 8.27 -40.82 -0.34 3.66 16 40 H 0.09 2.42 6.51 -51.92 -0.34 2.08 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 345.58 15.07 5.21 5.21 Total: -1.00 -32.05 345.58 -8.83 -40.87 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.93 Total: 3.50 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -1.52 Total: -1.36 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.25 Total: -50.84 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.31 Total: -14.11 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.05 -8.83 -40.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025921747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.632 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds