Wall clock time and date at job start Tue Mar 31 2020 03:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.99262 * 2 1 4 4 O 1.43748 * 109.87476 * 238.91696 * 2 1 3 5 5 C 1.44385 * 106.97502 * 214.06250 * 4 2 1 6 6 C 1.55002 * 103.48922 * 40.06149 * 5 4 2 7 7 C 1.54100 * 109.87924 * 121.08726 * 2 1 3 8 8 C 1.53004 * 110.60169 * 2.72081 * 7 2 1 9 9 C 1.50699 * 110.48698 * 240.12632 * 7 2 1 10 10 O 1.21275 * 120.00048 * 3.78180 * 9 7 2 11 11 N 1.34773 * 119.99654 * 183.50022 * 9 7 2 12 12 C 1.46507 * 119.99653 * 180.27565 * 11 9 7 13 13 H 1.09000 * 115.51544 * 350.42002 * 12 11 9 14 14 C 1.52996 * 117.44247 * 205.00066 * 12 11 9 15 15 H 1.09006 * 119.54261 * 4.12234 * 14 12 11 16 16 C 1.54386 * 118.12249 * 160.81089 * 14 12 11 17 17 N 1.48140 * 104.61842 * 87.19246 * 16 14 12 18 18 C 1.36940 * 127.84010 * 140.39529 * 17 16 14 19 19 H 1.08004 * 119.99925 * 195.59987 * 18 17 16 20 20 C 1.38812 * 119.99776 * 15.59708 * 18 17 16 21 21 N 1.31620 * 120.00328 * 9.09568 * 20 18 17 22 22 Si 1.86802 * 119.99960 * 189.09822 * 20 18 17 23 23 H 1.48502 * 109.47394 * 89.99682 * 22 20 18 24 24 H 1.48499 * 109.47328 * 209.99787 * 22 20 18 25 25 H 1.48504 * 109.47067 * 329.99647 * 22 20 18 26 26 C 1.48143 * 104.32666 * 320.41428 * 17 16 14 27 27 C 1.52997 * 117.44076 * 135.76340 * 12 11 9 28 28 H 1.09005 * 119.54400 * 355.88505 * 27 12 11 29 29 H 1.08995 * 109.47201 * 298.91239 * 1 2 3 30 30 H 1.09004 * 109.47089 * 58.91556 * 1 2 3 31 31 H 1.09004 * 109.47112 * 178.91610 * 1 2 3 32 32 H 1.08999 * 110.61810 * 281.56546 * 5 4 2 33 33 H 1.08994 * 110.62113 * 158.55964 * 5 4 2 34 34 H 1.08995 * 110.90647 * 204.78206 * 6 5 4 35 35 H 1.08996 * 110.93372 * 81.18623 * 6 5 4 36 36 H 1.08998 * 109.46559 * 298.08351 * 8 7 2 37 37 H 1.09000 * 109.46871 * 58.07450 * 8 7 2 38 38 H 1.08998 * 109.47243 * 178.07995 * 8 7 2 39 39 H 0.96996 * 120.00675 * 0.28242 * 11 9 7 40 40 H 1.09008 * 110.40916 * 205.97720 * 16 14 12 41 41 H 1.09003 * 110.40643 * 328.40781 * 16 14 12 42 42 H 0.97002 * 120.00003 * 180.02562 * 21 20 18 43 43 H 1.09001 * 110.40739 * 280.80591 * 26 17 16 44 44 H 1.08996 * 110.41227 * 158.36444 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0187 -0.6979 -1.1578 5 6 3.2379 -1.3642 -0.7649 6 6 2.9195 -1.8916 0.6575 7 6 2.0540 -0.7483 1.2410 8 6 0.8917 -1.3191 2.0561 9 6 2.8946 0.1674 2.0931 10 8 3.0143 1.3359 1.7917 11 7 3.5086 -0.3112 3.1933 12 6 4.3209 0.5804 4.0250 13 1 4.5134 1.5679 3.6055 14 6 5.4281 -0.0558 4.8677 15 1 5.6255 -1.1241 4.7777 16 6 6.5629 0.8542 5.3850 17 7 6.0545 1.3934 6.6676 18 6 6.7504 1.5923 7.8301 19 1 6.2193 1.7514 8.7570 20 6 8.1385 1.5893 7.8172 21 7 8.7860 1.5754 6.6713 22 14 9.0875 1.6051 9.4261 23 1 9.3361 0.2092 9.8679 24 1 10.3848 2.3003 9.2288 25 1 8.2961 2.3182 10.4607 26 6 4.6222 1.6684 6.4076 27 6 4.1485 0.4810 5.5419 28 1 3.3925 -0.1874 5.9543 29 1 -0.3633 0.4968 0.8995 30 1 -0.3633 0.5306 -0.8801 31 1 -0.3633 -1.0275 -0.0194 32 1 4.0684 -0.6590 -0.7357 33 1 3.4584 -2.1908 -1.4402 34 1 3.8331 -2.0225 1.2373 35 1 2.3541 -2.8222 0.6103 36 1 0.2614 -0.5034 2.4104 37 1 0.3021 -1.9878 1.4290 38 1 1.2836 -1.8726 2.9094 39 1 3.4129 -1.2458 3.4344 40 1 7.4706 0.2734 5.5499 41 1 6.7517 1.6641 4.6803 42 1 9.7559 1.5729 6.6624 43 1 4.5079 2.6054 5.8626 44 1 4.0655 1.7019 7.3441 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025921747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:55 Heat of formation + Delta-G solvation = -43.107621 kcal Electronic energy + Delta-G solvation = -24235.648159 eV Core-core repulsion = 20767.885522 eV Total energy + Delta-G solvation = -3467.762637 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.02363 -40.54565 -39.20571 -36.16572 -35.20807 -34.20347 -32.60907 -31.87003 -28.94970 -28.64165 -27.67182 -26.54312 -24.19152 -23.41803 -22.41352 -22.00258 -20.91399 -20.20269 -18.90603 -18.54979 -17.68309 -16.94675 -16.77101 -16.63388 -16.28773 -15.67455 -15.56134 -15.18972 -14.94396 -14.85305 -14.66232 -13.90620 -13.81213 -13.56775 -13.38062 -13.30310 -13.09484 -12.91465 -12.72623 -12.57805 -12.45902 -12.19519 -12.10904 -12.04039 -11.90678 -11.88930 -11.73952 -11.69475 -11.00308 -10.84456 -10.70780 -10.58520 -9.76854 -8.94802 -7.93430 -5.30760 1.41546 1.46688 1.48385 1.57591 1.84484 2.47332 2.80415 2.82444 3.26365 3.32995 3.49634 3.62165 3.66189 3.80379 3.87973 3.89959 4.10929 4.12789 4.24800 4.36010 4.40587 4.47933 4.56953 4.62645 4.68209 4.74938 4.81489 4.84373 4.87762 4.96437 4.99952 5.01928 5.11110 5.16225 5.25738 5.37509 5.38942 5.42675 5.50770 5.62122 5.87833 6.14599 6.43482 6.98349 7.12247 7.65201 8.43420 9.20427 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.037996 B = 0.003007 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.736402 B = 9308.878562 C = 9566.550135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.077 3.923 3 H 0.057 0.943 4 O -0.388 6.388 5 C 0.037 3.963 6 C -0.137 4.137 7 C -0.104 4.104 8 C -0.135 4.135 9 C 0.526 3.474 10 O -0.580 6.580 11 N -0.676 5.676 12 C 0.115 3.885 13 H 0.101 0.899 14 C -0.176 4.176 15 H 0.130 0.870 16 C 0.189 3.811 17 N -0.617 5.617 18 C -0.243 4.243 19 H 0.084 0.916 20 C -0.062 4.062 21 N -0.948 5.948 22 Si 0.983 3.017 23 H -0.282 1.282 24 H -0.296 1.296 25 H -0.267 1.267 26 C 0.147 3.853 27 C -0.165 4.165 28 H 0.139 0.861 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.120 0.880 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.418 0.582 40 H 0.060 0.940 41 H -0.007 1.007 42 H 0.250 0.750 43 H 0.016 0.984 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.212 -12.283 -11.505 24.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.019 3.981 3 H 0.075 0.925 4 O -0.307 6.307 5 C -0.039 4.039 6 C -0.175 4.175 7 C -0.107 4.107 8 C -0.192 4.192 9 C 0.314 3.686 10 O -0.459 6.459 11 N -0.325 5.325 12 C 0.008 3.992 13 H 0.119 0.881 14 C -0.197 4.197 15 H 0.148 0.852 16 C 0.063 3.937 17 N -0.341 5.341 18 C -0.371 4.371 19 H 0.101 0.899 20 C -0.256 4.256 21 N -0.596 5.596 22 Si 0.810 3.190 23 H -0.209 1.209 24 H -0.222 1.222 25 H -0.192 1.192 26 C 0.022 3.978 27 C -0.186 4.186 28 H 0.156 0.844 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.138 0.862 34 H 0.110 0.890 35 H 0.139 0.861 36 H 0.083 0.917 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.256 0.744 40 H 0.079 0.921 41 H 0.011 0.989 42 H 0.059 0.941 43 H 0.033 0.967 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.010 -11.418 -11.796 23.641 hybrid contribution 1.298 0.322 0.939 1.634 sum -15.713 -11.096 -10.857 22.088 Atomic orbital electron populations 1.22011 0.91481 1.03964 1.02755 1.22791 0.96745 0.95433 0.83138 0.92520 1.88857 1.40203 1.68004 1.33663 1.23717 0.86917 0.96750 0.96565 1.23359 1.00528 0.97934 0.95667 1.22138 0.97253 0.95548 0.95810 1.22002 0.95511 1.01710 0.99970 1.20900 0.78893 0.88250 0.80604 1.90690 1.63476 1.19921 1.71848 1.45116 1.49023 1.13353 1.25034 1.21373 0.95166 0.94903 0.87763 0.88112 1.24361 0.91535 1.00579 1.03220 0.85242 1.20780 0.94428 0.93005 0.85524 1.45484 1.05864 1.73102 1.09616 1.19417 0.89078 1.42659 0.85989 0.89870 1.25778 0.97457 1.01919 1.00431 1.70101 1.06908 1.57058 1.25510 0.85021 0.77522 0.77669 0.78747 1.20881 1.22223 1.19185 1.21256 0.85507 0.94012 0.97057 1.24274 1.00298 1.01551 0.92451 0.84375 0.90352 0.92242 0.89662 0.93893 0.86154 0.89031 0.86131 0.91666 0.88483 0.90196 0.74389 0.92143 0.98906 0.94068 0.96659 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 8.41 71.98 0.61 -1.69 16 2 C 0.08 1.67 3.67 30.97 0.11 1.79 16 3 H 0.06 1.65 6.45 -2.39 -0.02 1.63 16 4 O -0.39 -8.75 11.19 -148.98 -1.67 -10.42 16 5 C 0.04 0.64 7.72 72.67 0.56 1.21 16 6 C -0.14 -1.82 6.23 31.90 0.20 -1.62 16 7 C -0.10 -1.83 0.81 -51.94 -0.04 -1.88 16 8 C -0.13 -1.48 7.19 71.98 0.52 -0.97 16 9 C 0.53 13.64 6.47 87.66 0.57 14.21 16 10 O -0.58 -21.02 14.83 -3.01 -0.04 -21.07 16 11 N -0.68 -15.76 5.20 -442.54 -2.30 -18.06 16 12 C 0.12 3.69 5.97 44.99 0.27 3.96 16 13 H 0.10 3.96 7.40 -2.39 -0.02 3.95 16 14 C -0.18 -6.29 7.05 -9.89 -0.07 -6.36 16 15 H 0.13 3.95 8.14 -2.38 -0.02 3.93 16 16 C 0.19 9.30 5.70 86.53 0.49 9.80 16 17 N -0.62 -31.96 3.38 -688.15 -2.33 -34.29 16 18 C -0.24 -13.59 10.35 84.03 0.87 -12.72 16 19 H 0.08 4.42 7.85 -2.91 -0.02 4.40 16 20 C -0.06 -3.52 5.40 84.86 0.46 -3.06 16 21 N -0.95 -57.10 10.87 21.65 0.24 -56.86 16 22 Si 0.98 45.17 29.56 68.60 2.03 47.20 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 C 0.15 6.16 7.04 86.54 0.61 6.76 16 27 C -0.16 -5.41 7.06 -9.89 -0.07 -5.48 16 28 H 0.14 3.64 8.14 -2.38 -0.02 3.62 16 29 H 0.08 1.13 6.88 -2.39 -0.02 1.12 16 30 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.08 1.00 6.67 -2.38 -0.02 0.99 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.09 1.15 7.56 -2.39 -0.02 1.13 16 35 H 0.12 0.93 7.87 -2.39 -0.02 0.92 16 36 H 0.06 0.80 6.85 -2.39 -0.02 0.79 16 37 H 0.10 0.70 6.72 -2.39 -0.02 0.68 16 38 H 0.08 0.63 7.69 -2.39 -0.02 0.62 16 39 H 0.42 6.64 8.27 -92.71 -0.77 5.88 16 40 H 0.06 3.33 6.51 -2.38 -0.02 3.32 16 41 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 42 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 43 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -73.79 345.58 1.24 -72.55 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.24 Total: 16.99 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 5.08 Total: 3.95 kcal Atomic # 7 Polarization: -104.82 SS G_CDS: -4.39 Total: -109.21 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -1.71 Total: -31.49 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -73.79 1.24 -72.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025921747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.444 kcal (2) G-P(sol) polarization free energy of solvation -73.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds