Wall clock time and date at job start Tue Mar 31 2020 03:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.52454 * 2 1 4 4 C 1.53095 * 109.57032 * 120.16340 * 2 1 3 5 5 O 1.42905 * 109.41009 * 177.54234 * 4 2 1 6 6 C 1.42902 * 114.10307 * 298.83672 * 5 4 2 7 7 C 1.53098 * 109.40943 * 61.16071 * 6 5 4 8 8 C 1.53175 * 109.16279 * 302.39308 * 7 6 5 9 9 H 1.09000 * 109.61837 * 176.89427 * 8 7 6 10 10 C 1.50701 * 109.54432 * 297.11451 * 8 7 6 11 11 O 1.21287 * 120.00316 * 119.55772 * 10 8 7 12 12 N 1.34780 * 120.00198 * 299.56106 * 10 8 7 13 13 C 1.46497 * 120.00289 * 180.02562 * 12 10 8 14 14 H 1.09008 * 115.49222 * 9.61725 * 13 12 10 15 15 C 1.52999 * 117.44382 * 224.23721 * 13 12 10 16 16 H 1.08996 * 119.53599 * 4.11651 * 15 13 12 17 17 C 1.54383 * 118.90161 * 161.25113 * 15 13 12 18 18 N 1.48148 * 104.62014 * 87.20866 * 17 15 13 19 19 C 1.36941 * 127.83797 * 140.38887 * 18 17 15 20 20 H 1.07997 * 119.99575 * 195.58554 * 19 18 17 21 21 C 1.38809 * 119.99949 * 15.58999 * 19 18 17 22 22 N 1.31619 * 119.99894 * 9.09313 * 21 19 18 23 23 Si 1.86793 * 120.00003 * 189.09881 * 21 19 18 24 24 H 1.48495 * 109.47399 * 59.99639 * 23 21 19 25 25 H 1.48503 * 109.47451 * 179.97438 * 23 21 19 26 26 H 1.48509 * 109.47184 * 299.99887 * 23 21 19 27 27 C 1.48143 * 104.32411 * 320.41761 * 18 17 15 28 28 C 1.52996 * 117.44569 * 154.99513 * 13 12 10 29 29 H 1.09006 * 119.54001 * 355.88029 * 28 13 12 30 30 H 1.08992 * 109.47449 * 180.12196 * 1 2 3 31 31 H 1.09003 * 109.46766 * 300.12832 * 1 2 3 32 32 H 1.08997 * 109.46994 * 60.11963 * 1 2 3 33 33 H 1.08997 * 109.47911 * 297.52097 * 4 2 1 34 34 H 1.08993 * 109.48503 * 57.55224 * 4 2 1 35 35 H 1.08998 * 109.47960 * 181.14237 * 6 5 4 36 36 H 1.08995 * 109.47895 * 301.17228 * 6 5 4 37 37 H 1.09003 * 109.51824 * 182.49015 * 7 6 5 38 38 H 1.08995 * 109.52156 * 62.30240 * 7 6 5 39 39 H 0.97002 * 119.99532 * 359.97438 * 12 10 8 40 40 H 1.09000 * 110.40794 * 205.99732 * 17 15 13 41 41 H 1.09008 * 110.40985 * 328.42894 * 17 15 13 42 42 H 0.97001 * 119.99905 * 179.97438 * 22 21 19 43 43 H 1.08999 * 110.40697 * 280.79848 * 27 18 17 44 44 H 1.08998 * 110.40813 * 158.36402 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0428 -0.7248 1.2472 5 8 3.4707 -0.7730 1.2150 6 6 4.0057 -1.4796 0.0941 7 6 3.5716 -0.7851 -1.1994 8 6 2.0419 -0.7246 -1.2487 9 1 1.7256 -0.1827 -2.1400 10 6 1.4828 -2.1236 -1.2845 11 8 0.7471 -2.5056 -0.3991 12 7 1.8005 -2.9505 -2.3003 13 6 1.2566 -4.3103 -2.3354 14 1 0.4805 -4.5243 -1.6005 15 6 2.2172 -5.4449 -2.6971 16 1 3.2742 -5.2261 -2.8489 17 6 1.8318 -6.8942 -2.3309 18 7 1.0280 -7.3694 -3.4811 19 6 1.0488 -8.6074 -4.0662 20 1 0.6072 -8.7512 -5.0411 21 6 1.6374 -9.6772 -3.4060 22 7 2.0143 -9.5495 -2.1514 23 14 1.8946 -11.2980 -4.2982 24 1 2.7688 -11.0800 -5.4786 25 1 2.5375 -12.2720 -3.3799 26 1 0.5825 -11.8305 -4.7456 27 6 0.1972 -6.2013 -3.8552 28 6 1.1395 -4.9879 -3.7021 29 1 1.3937 -4.4288 -4.6027 30 1 -0.3634 -1.0276 0.0022 31 1 -0.3633 0.5158 0.8889 32 1 -0.3633 0.5120 -0.8910 33 1 1.7172 -0.1889 2.1387 34 1 1.6451 -1.7394 1.2673 35 1 5.0939 -1.4874 0.1550 36 1 3.6339 -2.5042 0.0991 37 1 3.9417 -1.3476 -2.0567 38 1 3.9772 0.2263 -1.2236 39 1 2.3886 -2.6449 -3.0086 40 1 2.7255 -7.5069 -2.2127 41 1 1.2357 -6.9100 -1.4184 42 1 2.4252 -10.2973 -1.6900 43 1 -0.6541 -6.1088 -3.1808 44 1 -0.1422 -6.2911 -4.8870 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026021180.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:00 Heat of formation + Delta-G solvation = -24.751703 kcal Electronic energy + Delta-G solvation = -24457.135168 eV Core-core repulsion = 20990.168503 eV Total energy + Delta-G solvation = -3466.966664 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.96315 -39.01734 -37.82275 -34.73173 -34.35274 -33.04473 -31.93736 -30.21432 -27.23191 -27.15843 -26.01510 -25.33168 -22.78831 -22.40829 -21.09418 -20.49200 -19.44671 -19.29111 -16.92278 -16.87101 -16.47663 -16.27547 -16.13314 -15.25522 -14.82387 -14.61461 -14.47007 -14.04053 -13.67780 -13.30919 -12.98928 -12.78572 -12.67531 -12.49631 -12.25961 -12.16083 -11.90995 -11.54646 -11.44402 -11.20938 -10.99066 -10.83525 -10.80669 -10.64637 -10.40831 -10.21795 -10.16794 -9.76294 -9.74027 -9.29661 -9.17262 -8.76562 -8.36867 -6.89725 -5.81807 -3.16610 2.53362 3.05085 3.37542 3.41933 3.43279 3.77804 4.23650 4.30091 4.43184 4.45878 4.51702 4.71320 4.90389 5.07042 5.09722 5.25874 5.32577 5.33724 5.35440 5.44404 5.46915 5.52369 5.53808 5.66405 5.72720 5.80143 5.83002 5.86212 5.93499 5.99244 6.10026 6.19217 6.41980 6.49524 6.64693 6.77716 6.84956 7.09538 7.33236 7.50177 7.52000 7.68908 8.18085 8.23382 9.08332 9.71156 10.47860 11.32381 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030544 B = 0.003240 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.476893 B = 8640.026328 C = 8941.674501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.101 4.101 3 H 0.079 0.921 4 C 0.052 3.948 5 O -0.384 6.384 6 C 0.057 3.943 7 C -0.147 4.147 8 C -0.108 4.108 9 H 0.100 0.900 10 C 0.519 3.481 11 O -0.528 6.528 12 N -0.696 5.696 13 C 0.099 3.901 14 H 0.131 0.869 15 C -0.182 4.182 16 H 0.100 0.900 17 C 0.186 3.814 18 N -0.593 5.593 19 C -0.231 4.231 20 H 0.077 0.923 21 C -0.004 4.004 22 N -0.914 5.914 23 Si 0.914 3.086 24 H -0.284 1.284 25 H -0.289 1.289 26 H -0.283 1.283 27 C 0.157 3.843 28 C -0.184 4.184 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.397 0.603 40 H 0.091 0.909 41 H 0.026 0.974 42 H 0.256 0.744 43 H 0.027 0.973 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.259 20.552 1.322 20.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.120 4.120 3 H 0.098 0.902 4 C -0.025 4.025 5 O -0.303 6.303 6 C -0.020 4.020 7 C -0.185 4.185 8 C -0.130 4.130 9 H 0.118 0.882 10 C 0.306 3.694 11 O -0.405 6.405 12 N -0.344 5.344 13 C -0.007 4.007 14 H 0.149 0.851 15 C -0.203 4.203 16 H 0.118 0.882 17 C 0.060 3.940 18 N -0.316 5.316 19 C -0.359 4.359 20 H 0.094 0.906 21 C -0.201 4.201 22 N -0.560 5.560 23 Si 0.744 3.256 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.209 1.209 27 C 0.030 3.970 28 C -0.206 4.206 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.231 0.769 40 H 0.109 0.891 41 H 0.044 0.956 42 H 0.066 0.934 43 H 0.044 0.956 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.907 20.065 2.138 20.268 hybrid contribution 0.408 -0.643 -1.261 1.473 sum 2.315 19.422 0.877 19.579 Atomic orbital electron populations 1.22103 0.93821 1.05126 1.01084 1.21513 0.97203 0.99143 0.94130 0.90246 1.22936 0.80312 1.02155 0.97049 1.87894 1.20956 1.76227 1.45235 1.22581 0.99221 0.95040 0.85192 1.22209 0.93614 1.03065 0.99579 1.21484 0.96534 0.93813 1.01152 0.88205 1.20514 0.80640 0.86805 0.81433 1.90578 1.36576 1.76482 1.36892 1.45449 1.50088 1.13120 1.25748 1.21802 1.00290 0.79493 0.99127 0.85108 1.24721 0.95199 0.96607 1.03787 0.88201 1.21041 0.97114 0.86483 0.89355 1.45178 1.42093 1.08487 1.35855 1.18946 1.34459 0.83474 0.98981 0.90566 1.24902 1.01858 0.97774 0.95591 1.69888 1.45773 1.31334 1.09018 0.86184 0.78010 0.82945 0.78510 1.21083 1.21502 1.20941 1.21097 0.91917 0.85650 0.98335 1.24311 1.03387 1.00588 0.92275 0.88066 0.88839 0.92829 0.93207 0.89241 0.90219 0.88620 0.92798 0.90355 0.89859 0.76872 0.89104 0.95648 0.93432 0.95562 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 8.87 37.16 0.33 -1.35 16 2 C -0.10 -1.00 2.67 -90.48 -0.24 -1.24 16 3 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 4 C 0.05 0.60 5.86 37.21 0.22 0.82 16 5 O -0.38 -4.78 10.76 -35.23 -0.38 -5.16 16 6 C 0.06 0.60 6.62 37.21 0.25 0.84 16 7 C -0.15 -1.22 5.57 -26.59 -0.15 -1.36 16 8 C -0.11 -1.03 2.61 -91.59 -0.24 -1.27 16 9 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 10 C 0.52 6.62 5.52 -10.98 -0.06 6.56 16 11 O -0.53 -8.45 10.93 5.55 0.06 -8.39 16 12 N -0.70 -8.66 5.44 -53.81 -0.29 -8.96 16 13 C 0.10 1.60 6.03 -67.93 -0.41 1.19 16 14 H 0.13 2.42 7.40 -51.92 -0.38 2.04 16 15 C -0.18 -3.37 7.03 -89.22 -0.63 -4.00 16 16 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 17 C 0.19 4.46 5.72 -2.41 -0.01 4.45 16 18 N -0.59 -15.10 3.38 -168.86 -0.57 -15.67 16 19 C -0.23 -6.38 10.35 -15.06 -0.16 -6.54 16 20 H 0.08 2.03 7.84 -52.49 -0.41 1.61 16 21 C 0.00 -0.11 5.40 -17.43 -0.09 -0.20 16 22 N -0.91 -26.69 10.86 55.49 0.60 -26.09 16 23 Si 0.91 21.76 29.56 -169.99 -5.03 16.74 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.16 3.25 7.06 -2.41 -0.02 3.24 16 28 C -0.18 -3.16 7.03 -89.22 -0.63 -3.79 16 29 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.09 1.21 5.28 -51.93 -0.27 0.93 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.12 5.80 -51.93 -0.30 0.82 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.67 7.38 -51.93 -0.38 0.29 16 37 H 0.08 0.54 7.52 -51.93 -0.39 0.15 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.40 3.86 8.24 -40.82 -0.34 3.52 16 40 H 0.09 2.43 6.51 -51.93 -0.34 2.09 16 41 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 340.60 15.07 5.13 5.13 Total: -1.00 -31.23 340.60 -9.34 -40.57 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -7.03 Total: 4.48 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -1.84 Total: -2.65 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: -0.26 Total: -50.72 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.32 Total: -13.55 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.23 -9.34 -40.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026021180.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.814 kcal (2) G-P(sol) polarization free energy of solvation -31.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds