Wall clock time and date at job start Tue Mar 31 2020 03:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.52454 * 2 1 4 4 C 1.53095 * 109.57032 * 120.16340 * 2 1 3 5 5 O 1.42905 * 109.41009 * 177.54234 * 4 2 1 6 6 C 1.42902 * 114.10307 * 298.83672 * 5 4 2 7 7 C 1.53098 * 109.40943 * 61.16071 * 6 5 4 8 8 C 1.53175 * 109.16279 * 302.39308 * 7 6 5 9 9 H 1.09000 * 109.61837 * 176.89427 * 8 7 6 10 10 C 1.50701 * 109.54432 * 297.11451 * 8 7 6 11 11 O 1.21287 * 120.00316 * 119.55772 * 10 8 7 12 12 N 1.34780 * 120.00198 * 299.56106 * 10 8 7 13 13 C 1.46497 * 120.00289 * 180.02562 * 12 10 8 14 14 H 1.09008 * 115.49222 * 9.61725 * 13 12 10 15 15 C 1.52999 * 117.44382 * 224.23721 * 13 12 10 16 16 H 1.08996 * 119.53599 * 4.11651 * 15 13 12 17 17 C 1.54383 * 118.90161 * 161.25113 * 15 13 12 18 18 N 1.48148 * 104.62014 * 87.20866 * 17 15 13 19 19 C 1.36941 * 127.83797 * 140.38887 * 18 17 15 20 20 H 1.07997 * 119.99575 * 195.58554 * 19 18 17 21 21 C 1.38809 * 119.99949 * 15.58999 * 19 18 17 22 22 N 1.31619 * 119.99894 * 9.09313 * 21 19 18 23 23 Si 1.86793 * 120.00003 * 189.09881 * 21 19 18 24 24 H 1.48495 * 109.47399 * 59.99639 * 23 21 19 25 25 H 1.48503 * 109.47451 * 179.97438 * 23 21 19 26 26 H 1.48509 * 109.47184 * 299.99887 * 23 21 19 27 27 C 1.48143 * 104.32411 * 320.41761 * 18 17 15 28 28 C 1.52996 * 117.44569 * 154.99513 * 13 12 10 29 29 H 1.09006 * 119.54001 * 355.88029 * 28 13 12 30 30 H 1.08992 * 109.47449 * 180.12196 * 1 2 3 31 31 H 1.09003 * 109.46766 * 300.12832 * 1 2 3 32 32 H 1.08997 * 109.46994 * 60.11963 * 1 2 3 33 33 H 1.08997 * 109.47911 * 297.52097 * 4 2 1 34 34 H 1.08993 * 109.48503 * 57.55224 * 4 2 1 35 35 H 1.08998 * 109.47960 * 181.14237 * 6 5 4 36 36 H 1.08995 * 109.47895 * 301.17228 * 6 5 4 37 37 H 1.09003 * 109.51824 * 182.49015 * 7 6 5 38 38 H 1.08995 * 109.52156 * 62.30240 * 7 6 5 39 39 H 0.97002 * 119.99532 * 359.97438 * 12 10 8 40 40 H 1.09000 * 110.40794 * 205.99732 * 17 15 13 41 41 H 1.09008 * 110.40985 * 328.42894 * 17 15 13 42 42 H 0.97001 * 119.99905 * 179.97438 * 22 21 19 43 43 H 1.08999 * 110.40697 * 280.79848 * 27 18 17 44 44 H 1.08998 * 110.40813 * 158.36402 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0428 -0.7248 1.2472 5 8 3.4707 -0.7730 1.2150 6 6 4.0057 -1.4796 0.0941 7 6 3.5716 -0.7851 -1.1994 8 6 2.0419 -0.7246 -1.2487 9 1 1.7256 -0.1827 -2.1400 10 6 1.4828 -2.1236 -1.2845 11 8 0.7471 -2.5056 -0.3991 12 7 1.8005 -2.9505 -2.3003 13 6 1.2566 -4.3103 -2.3354 14 1 0.4805 -4.5243 -1.6005 15 6 2.2172 -5.4449 -2.6971 16 1 3.2742 -5.2261 -2.8489 17 6 1.8318 -6.8942 -2.3309 18 7 1.0280 -7.3694 -3.4811 19 6 1.0488 -8.6074 -4.0662 20 1 0.6072 -8.7512 -5.0411 21 6 1.6374 -9.6772 -3.4060 22 7 2.0143 -9.5495 -2.1514 23 14 1.8946 -11.2980 -4.2982 24 1 2.7688 -11.0800 -5.4786 25 1 2.5375 -12.2720 -3.3799 26 1 0.5825 -11.8305 -4.7456 27 6 0.1972 -6.2013 -3.8552 28 6 1.1395 -4.9879 -3.7021 29 1 1.3937 -4.4288 -4.6027 30 1 -0.3634 -1.0276 0.0022 31 1 -0.3633 0.5158 0.8889 32 1 -0.3633 0.5120 -0.8910 33 1 1.7172 -0.1889 2.1387 34 1 1.6451 -1.7394 1.2673 35 1 5.0939 -1.4874 0.1550 36 1 3.6339 -2.5042 0.0991 37 1 3.9417 -1.3476 -2.0567 38 1 3.9772 0.2263 -1.2236 39 1 2.3886 -2.6449 -3.0086 40 1 2.7255 -7.5069 -2.2127 41 1 1.2357 -6.9100 -1.4184 42 1 2.4252 -10.2973 -1.6900 43 1 -0.6541 -6.1088 -3.1808 44 1 -0.1422 -6.2911 -4.8870 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026021180.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:00 Heat of formation + Delta-G solvation = -45.802688 kcal Electronic energy + Delta-G solvation = -24458.048007 eV Core-core repulsion = 20990.168503 eV Total energy + Delta-G solvation = -3467.879504 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.92505 -40.43122 -38.93811 -36.19023 -35.24246 -34.54880 -33.05799 -31.88827 -28.94471 -28.17003 -27.53565 -26.49871 -23.98722 -23.36720 -22.45345 -21.89767 -20.91502 -20.48110 -18.87817 -17.82491 -17.63757 -17.21518 -17.06691 -16.76204 -16.18378 -15.79792 -15.46713 -15.37051 -14.90748 -14.82404 -14.66493 -13.95713 -13.68885 -13.51720 -13.34963 -13.29757 -13.19790 -12.90975 -12.88969 -12.69371 -12.57536 -12.16494 -12.08125 -12.00063 -11.87645 -11.66686 -11.56024 -11.39500 -10.84106 -10.74686 -10.61185 -10.20935 -9.68623 -8.94520 -7.93118 -5.30676 1.46154 1.49421 1.53052 1.56376 1.96049 2.47823 2.82724 2.95005 3.27057 3.48581 3.59469 3.68427 3.73956 3.84273 3.91386 3.96201 4.10750 4.14800 4.30265 4.37720 4.50651 4.51713 4.56402 4.69802 4.75355 4.77627 4.81371 4.87048 4.88554 4.97430 4.99554 5.10820 5.13564 5.23470 5.26137 5.39340 5.42535 5.50078 5.61749 5.66310 6.14617 6.23713 6.53550 6.97998 7.26528 7.65621 8.43834 9.20549 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030544 B = 0.003240 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.476893 B = 8640.026328 C = 8941.674501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.098 4.098 3 H 0.103 0.897 4 C 0.050 3.950 5 O -0.399 6.399 6 C 0.048 3.952 7 C -0.139 4.139 8 C -0.101 4.101 9 H 0.133 0.867 10 C 0.515 3.485 11 O -0.565 6.565 12 N -0.683 5.683 13 C 0.123 3.877 14 H 0.103 0.897 15 C -0.188 4.188 16 H 0.120 0.880 17 C 0.191 3.809 18 N -0.617 5.617 19 C -0.245 4.245 20 H 0.085 0.915 21 C -0.062 4.062 22 N -0.949 5.949 23 Si 0.983 3.017 24 H -0.274 1.274 25 H -0.295 1.295 26 H -0.275 1.275 27 C 0.148 3.852 28 C -0.160 4.160 29 H 0.140 0.860 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.112 0.888 36 H 0.025 0.975 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.417 0.583 40 H 0.056 0.944 41 H -0.009 1.009 42 H 0.250 0.750 43 H 0.017 0.983 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.089 23.320 -0.995 23.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.117 4.117 3 H 0.121 0.879 4 C -0.027 4.027 5 O -0.318 6.318 6 C -0.028 4.028 7 C -0.177 4.177 8 C -0.122 4.122 9 H 0.151 0.849 10 C 0.303 3.697 11 O -0.444 6.444 12 N -0.333 5.333 13 C 0.016 3.984 14 H 0.121 0.879 15 C -0.210 4.210 16 H 0.138 0.862 17 C 0.064 3.936 18 N -0.341 5.341 19 C -0.373 4.373 20 H 0.102 0.898 21 C -0.256 4.256 22 N -0.596 5.596 23 Si 0.810 3.190 24 H -0.200 1.200 25 H -0.221 1.221 26 H -0.200 1.200 27 C 0.023 3.977 28 C -0.181 4.181 29 H 0.157 0.843 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.065 0.935 35 H 0.130 0.870 36 H 0.044 0.956 37 H 0.117 0.883 38 H 0.125 0.875 39 H 0.254 0.746 40 H 0.074 0.926 41 H 0.009 0.991 42 H 0.059 0.941 43 H 0.035 0.965 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.738 22.886 -0.213 23.050 hybrid contribution 0.073 -1.487 -0.441 1.552 sum 2.811 21.399 -0.654 21.593 Atomic orbital electron populations 1.22035 0.94200 1.03376 1.02235 1.21523 0.96824 1.00002 0.93312 0.87888 1.22915 0.80166 1.00784 0.98792 1.87870 1.21151 1.76320 1.46492 1.22749 1.00101 0.93793 0.86208 1.22224 0.92430 1.04399 0.98630 1.21566 0.97274 0.91159 1.02246 0.84891 1.21279 0.79868 0.88047 0.80472 1.90603 1.38179 1.77395 1.38189 1.45251 1.50249 1.11188 1.26582 1.21277 0.98362 0.80922 0.97845 0.87926 1.24376 0.96761 0.94153 1.05690 0.86198 1.20736 0.94945 0.89657 0.88212 1.45492 1.43480 1.09208 1.35953 1.19391 1.33869 0.84687 0.99391 0.89771 1.25787 1.02119 1.01349 0.96330 1.70107 1.46965 1.31940 1.10632 0.85097 0.78110 0.78459 0.77306 1.19956 1.22094 1.20043 1.21258 0.92018 0.85703 0.98752 1.24207 1.00683 0.99367 0.93837 0.84272 0.91926 0.92112 0.91669 0.88456 0.93457 0.86980 0.95646 0.88306 0.87506 0.74589 0.92552 0.99132 0.94116 0.96472 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 8.87 71.98 0.64 -2.38 16 2 C -0.10 -1.70 2.67 -10.70 -0.03 -1.73 16 3 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 4 C 0.05 1.14 5.86 72.01 0.42 1.56 16 5 O -0.40 -9.51 10.76 -148.98 -1.60 -11.11 16 6 C 0.05 0.94 6.62 72.01 0.48 1.41 16 7 C -0.14 -1.76 5.57 30.69 0.17 -1.59 16 8 C -0.10 -1.57 2.61 -11.42 -0.03 -1.60 16 9 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 10 C 0.51 12.30 5.52 87.66 0.48 12.78 16 11 O -0.56 -18.37 10.93 -3.05 -0.03 -18.41 16 12 N -0.68 -15.33 5.44 -442.53 -2.41 -17.73 16 13 C 0.12 3.89 6.03 44.99 0.27 4.16 16 14 H 0.10 3.93 7.40 -2.38 -0.02 3.91 16 15 C -0.19 -6.92 7.03 -9.89 -0.07 -6.99 16 16 H 0.12 3.94 8.14 -2.39 -0.02 3.92 16 17 C 0.19 9.59 5.72 86.53 0.50 10.08 16 18 N -0.62 -32.16 3.38 -688.15 -2.33 -34.48 16 19 C -0.24 -13.76 10.35 84.03 0.87 -12.89 16 20 H 0.08 4.46 7.84 -2.91 -0.02 4.44 16 21 C -0.06 -3.54 5.40 84.86 0.46 -3.09 16 22 N -0.95 -57.81 10.86 21.65 0.24 -57.58 16 23 Si 0.98 45.40 29.56 68.60 2.03 47.42 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 27 C 0.15 6.11 7.06 86.54 0.61 6.72 16 28 C -0.16 -5.17 7.03 -9.89 -0.07 -5.24 16 29 H 0.14 3.53 8.14 -2.38 -0.02 3.51 16 30 H 0.06 1.61 5.28 -2.39 -0.01 1.60 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 33 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.05 1.39 5.80 -2.39 -0.01 1.38 16 35 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.03 0.63 7.38 -2.39 -0.02 0.61 16 37 H 0.10 0.88 7.52 -2.39 -0.02 0.86 16 38 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.42 6.30 8.24 -92.71 -0.76 5.54 16 40 H 0.06 3.19 6.51 -2.39 -0.02 3.17 16 41 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 42 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 43 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -72.48 340.60 0.83 -71.66 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.23 Total: 19.02 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 4.70 Total: 1.21 kcal Atomic # 7 Polarization: -105.29 SS G_CDS: -4.50 Total: -109.79 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -1.64 Total: -29.52 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -72.48 0.83 -71.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026021180.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.855 kcal (2) G-P(sol) polarization free energy of solvation -72.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds