Wall clock time and date at job start Tue Mar 31 2020 03:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46846 * 2 1 4 4 C 1.50696 * 109.47430 * 119.99894 * 2 1 3 5 5 O 1.21278 * 120.00209 * 119.99875 * 4 2 1 6 6 N 1.34783 * 119.99714 * 300.00420 * 4 2 1 7 7 C 1.46500 * 119.99740 * 179.97438 * 6 4 2 8 8 H 1.09004 * 115.51720 * 350.41556 * 7 6 4 9 9 C 1.53001 * 117.44432 * 204.99432 * 7 6 4 10 10 H 1.09002 * 119.53925 * 5.72433 * 9 7 6 11 11 C 1.54393 * 118.12322 * 160.81059 * 9 7 6 12 12 N 1.48146 * 104.61618 * 87.19203 * 11 9 7 13 13 C 1.36941 * 127.83206 * 140.41169 * 12 11 9 14 14 H 1.08000 * 119.99308 * 195.57800 * 13 12 11 15 15 C 1.38803 * 120.00247 * 15.57737 * 13 12 11 16 16 N 1.31624 * 120.00202 * 9.09534 * 15 13 12 17 17 Si 1.86800 * 120.00177 * 189.09526 * 15 13 12 18 18 H 1.48495 * 109.47411 * 89.99686 * 17 15 13 19 19 H 1.48499 * 109.47070 * 210.00233 * 17 15 13 20 20 H 1.48506 * 109.46854 * 330.00204 * 17 15 13 21 21 C 1.48146 * 104.32584 * 320.41545 * 12 11 9 22 22 C 1.53005 * 117.44027 * 135.75722 * 7 6 4 23 23 H 1.08993 * 119.54017 * 355.88068 * 22 7 6 24 24 C 1.52997 * 109.47248 * 239.99829 * 2 1 3 25 25 H 1.09001 * 110.27575 * 300.63961 * 24 2 1 26 26 C 1.54946 * 110.30809 * 62.83430 * 24 2 1 27 27 C 1.55310 * 100.94407 * 155.36216 * 26 24 2 28 28 C 1.54380 * 102.24753 * 325.86474 * 27 26 24 29 29 O 1.43232 * 107.59228 * 21.35868 * 28 27 26 30 30 H 1.09006 * 109.47465 * 60.00243 * 1 2 3 31 31 H 1.08998 * 109.47089 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47584 * 300.00244 * 1 2 3 33 33 H 0.96998 * 120.00302 * 359.97438 * 6 4 2 34 34 H 1.09002 * 110.40594 * 205.98201 * 11 9 7 35 35 H 1.09000 * 110.40263 * 328.41155 * 11 9 7 36 36 H 0.96997 * 120.00002 * 179.97438 * 16 15 13 37 37 H 1.08995 * 110.40565 * 158.36516 * 21 12 11 38 38 H 1.08999 * 110.40604 * 280.68438 * 21 12 11 39 39 H 1.09002 * 111.12419 * 273.27945 * 26 24 2 40 40 H 1.09003 * 111.12907 * 37.43894 * 26 24 2 41 41 H 1.09000 * 110.84293 * 207.67654 * 27 26 24 42 42 H 1.08996 * 110.84527 * 84.05758 * 27 26 24 43 43 H 1.09001 * 109.83184 * 261.84098 * 28 27 26 44 44 H 1.09002 * 109.82765 * 140.87175 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 2.1946 -0.9408 3.6507 8 1 2.6744 -1.9035 3.4741 9 6 1.3810 -0.7838 4.9369 10 1 0.4292 -0.2532 4.9094 11 6 1.5896 -1.8213 6.0612 12 7 2.7258 -1.2928 6.8514 13 6 2.8793 -1.3030 8.2121 14 1 3.6223 -0.6715 8.6764 15 6 2.0800 -2.1249 8.9946 16 7 1.3027 -3.0220 8.4258 17 14 2.1075 -1.9581 10.8549 18 1 1.0801 -0.9733 11.2789 19 1 1.8158 -3.2757 11.4745 20 1 3.4488 -1.4924 11.2903 21 6 3.6580 -0.7507 5.8357 22 6 2.7447 -0.0779 4.7882 23 1 2.8218 1.0011 4.6553 24 6 2.0400 -0.7213 -1.2492 25 1 1.6746 -1.7480 -1.2681 26 6 1.5937 0.0343 -2.5263 27 6 2.6824 -0.4232 -3.5350 28 6 3.9299 -0.5515 -2.6347 29 8 3.4759 -0.7022 -1.2847 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.1493 0.5390 2.5436 34 1 0.6963 -1.8942 6.6816 35 1 1.8405 -2.7942 5.6386 36 1 0.7445 -3.5966 8.9727 37 1 4.3253 -0.0158 6.2860 38 1 4.2334 -1.5562 5.3795 39 1 0.6022 -0.2864 -2.8461 40 1 1.6260 1.1134 -2.3759 41 1 2.8370 0.3306 -4.3071 42 1 2.4222 -1.3850 -3.9768 43 1 4.5421 0.3463 -2.7209 44 1 4.5103 -1.4258 -2.9295 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026027304.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:54 Heat of formation + Delta-G solvation = -27.647033 kcal Electronic energy + Delta-G solvation = -23743.772376 eV Core-core repulsion = 20276.680160 eV Total energy + Delta-G solvation = -3467.092215 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.34694 -39.22057 -38.10422 -34.43872 -34.16307 -32.47598 -32.13012 -30.17266 -28.25752 -27.10814 -25.78585 -24.81085 -22.57586 -21.84107 -21.11353 -20.37153 -19.68761 -19.24681 -17.33347 -16.87203 -16.52125 -16.49192 -15.78453 -15.33929 -14.78422 -14.58322 -14.10959 -13.62922 -13.52135 -13.43392 -13.23049 -12.72249 -12.66584 -12.50703 -12.14133 -11.93705 -11.89077 -11.51692 -11.48740 -11.34382 -11.26100 -11.07793 -10.95978 -10.81739 -10.34408 -10.15656 -10.10259 -9.71766 -9.60375 -9.54651 -9.13206 -8.70081 -8.24380 -6.84085 -5.77453 -3.11648 2.78046 3.17703 3.39989 3.44934 3.47137 3.59224 4.15696 4.35498 4.37041 4.48996 4.58727 4.64839 4.77273 4.89417 4.98054 5.10485 5.22450 5.23651 5.36074 5.37494 5.41494 5.43747 5.45281 5.54323 5.58040 5.61018 5.70629 5.78057 5.88071 5.93501 5.95720 6.21052 6.31909 6.57892 6.74485 6.88942 6.94296 6.95154 7.38364 7.55702 7.68980 7.73820 8.22988 8.43203 9.13297 9.75919 10.53458 11.36986 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.044508 B = 0.002694 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.946655 B =10389.517523 C =10626.565874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 H 0.101 0.899 4 C 0.519 3.481 5 O -0.522 6.522 6 N -0.700 5.700 7 C 0.098 3.902 8 H 0.130 0.870 9 C -0.181 4.181 10 H 0.102 0.898 11 C 0.185 3.815 12 N -0.593 5.593 13 C -0.226 4.226 14 H 0.077 0.923 15 C -0.007 4.007 16 N -0.916 5.916 17 Si 0.914 3.086 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.156 3.844 22 C -0.183 4.183 23 H 0.101 0.899 24 C 0.102 3.898 25 H 0.077 0.923 26 C -0.152 4.152 27 C -0.156 4.156 28 C 0.047 3.953 29 O -0.361 6.361 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.396 0.604 34 H 0.091 0.909 35 H 0.025 0.975 36 H 0.254 0.746 37 H 0.051 0.949 38 H 0.028 0.972 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.784 9.021 -23.449 25.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 H 0.119 0.881 4 C 0.305 3.695 5 O -0.396 6.396 6 N -0.350 5.350 7 C -0.008 4.008 8 H 0.148 0.852 9 C -0.202 4.202 10 H 0.120 0.880 11 C 0.059 3.941 12 N -0.317 5.317 13 C -0.354 4.354 14 H 0.095 0.905 15 C -0.204 4.204 16 N -0.562 5.562 17 Si 0.744 3.256 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.205 1.205 21 C 0.029 3.971 22 C -0.205 4.205 23 H 0.119 0.881 24 C 0.044 3.956 25 H 0.095 0.905 26 C -0.190 4.190 27 C -0.194 4.194 28 C -0.030 4.030 29 O -0.280 6.280 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.230 0.770 34 H 0.109 0.891 35 H 0.043 0.957 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.201 8.141 -23.104 24.595 hybrid contribution -0.467 0.664 0.768 1.118 sum -2.668 8.805 -22.336 24.157 Atomic orbital electron populations 1.21768 0.92008 1.03338 1.03052 1.21512 0.97471 1.01193 0.93017 0.88064 1.20354 0.80264 0.84835 0.84062 1.90735 1.36628 1.25910 1.86376 1.45396 1.53068 1.31466 1.05022 1.21812 1.01706 0.97462 0.79789 0.85233 1.24635 0.94569 1.04509 0.96470 0.88021 1.21060 0.93748 0.90893 0.88394 1.45182 1.16450 1.68889 1.01168 1.19007 1.18304 1.18505 0.79584 0.90521 1.24905 1.00443 0.96704 0.98305 1.69902 1.29900 1.22467 1.33912 0.86097 0.77754 0.76915 0.84858 1.21547 1.21658 1.20539 1.21115 0.91671 0.95512 0.88820 1.24349 0.98614 0.98087 0.99436 0.88060 1.22710 0.81770 0.98640 0.92442 0.90492 1.23355 0.99620 1.01220 0.94773 1.23123 0.95224 1.02445 0.98594 1.23122 0.96261 1.01213 0.82366 1.88605 1.19664 1.94557 1.25186 0.91216 0.91578 0.91377 0.77018 0.89098 0.95670 0.93554 0.93066 0.95450 0.89701 0.90176 0.90097 0.90492 0.91571 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.89 37.15 0.33 -0.71 16 2 C -0.11 -1.11 2.50 -91.78 -0.23 -1.34 16 3 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 4 C 0.52 7.64 7.03 -10.98 -0.08 7.56 16 5 O -0.52 -10.09 14.96 -11.23 -0.17 -10.26 16 6 N -0.70 -9.78 5.46 -53.80 -0.29 -10.08 16 7 C 0.10 1.74 5.98 -67.93 -0.41 1.33 16 8 H 0.13 2.63 7.40 -51.93 -0.38 2.25 16 9 C -0.18 -3.47 7.06 -89.22 -0.63 -4.10 16 10 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 11 C 0.19 4.54 5.70 -2.41 -0.01 4.53 16 12 N -0.59 -15.55 3.38 -168.86 -0.57 -16.12 16 13 C -0.23 -6.38 10.35 -15.06 -0.16 -6.53 16 14 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 15 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 16 N -0.92 -27.11 10.86 55.49 0.60 -26.50 16 17 Si 0.91 22.12 29.56 -169.99 -5.03 17.09 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.16 3.41 7.04 -2.40 -0.02 3.39 16 22 C -0.18 -3.40 7.06 -89.21 -0.63 -4.03 16 23 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 24 C 0.10 1.08 2.46 -25.71 -0.06 1.02 16 25 H 0.08 0.90 8.13 -51.93 -0.42 0.48 16 26 C -0.15 -1.04 5.55 -24.48 -0.14 -1.17 16 27 C -0.16 -1.04 7.02 -24.78 -0.17 -1.21 16 28 C 0.05 0.44 7.79 37.88 0.30 0.74 16 29 O -0.36 -4.85 10.09 -52.02 -0.52 -5.38 16 30 H 0.07 0.36 7.28 -51.93 -0.38 -0.02 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.44 7.56 -51.93 -0.39 0.05 16 33 H 0.40 4.30 8.24 -40.82 -0.34 3.96 16 34 H 0.09 2.46 6.51 -51.93 -0.34 2.12 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.45 8.05 -51.93 -0.42 0.03 16 40 H 0.08 0.48 8.06 -51.93 -0.42 0.06 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 352.40 15.07 5.31 5.31 Total: -1.00 -34.09 352.40 -9.95 -44.05 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -7.29 Total: 2.70 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -2.00 Total: -0.81 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.26 Total: -52.69 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.69 Total: -15.64 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.09 -9.95 -44.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026027304.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.400 kcal (2) G-P(sol) polarization free energy of solvation -34.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds