Wall clock time and date at job start Tue Mar 31 2020 03:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46846 * 2 1 4 4 C 1.50696 * 109.47430 * 119.99894 * 2 1 3 5 5 O 1.21278 * 120.00209 * 119.99875 * 4 2 1 6 6 N 1.34783 * 119.99714 * 300.00420 * 4 2 1 7 7 C 1.46500 * 119.99740 * 179.97438 * 6 4 2 8 8 H 1.09004 * 115.51720 * 350.41556 * 7 6 4 9 9 C 1.53001 * 117.44432 * 204.99432 * 7 6 4 10 10 H 1.09002 * 119.53925 * 5.72433 * 9 7 6 11 11 C 1.54393 * 118.12322 * 160.81059 * 9 7 6 12 12 N 1.48146 * 104.61618 * 87.19203 * 11 9 7 13 13 C 1.36941 * 127.83206 * 140.41169 * 12 11 9 14 14 H 1.08000 * 119.99308 * 195.57800 * 13 12 11 15 15 C 1.38803 * 120.00247 * 15.57737 * 13 12 11 16 16 N 1.31624 * 120.00202 * 9.09534 * 15 13 12 17 17 Si 1.86800 * 120.00177 * 189.09526 * 15 13 12 18 18 H 1.48495 * 109.47411 * 89.99686 * 17 15 13 19 19 H 1.48499 * 109.47070 * 210.00233 * 17 15 13 20 20 H 1.48506 * 109.46854 * 330.00204 * 17 15 13 21 21 C 1.48146 * 104.32584 * 320.41545 * 12 11 9 22 22 C 1.53005 * 117.44027 * 135.75722 * 7 6 4 23 23 H 1.08993 * 119.54017 * 355.88068 * 22 7 6 24 24 C 1.52997 * 109.47248 * 239.99829 * 2 1 3 25 25 H 1.09001 * 110.27575 * 300.63961 * 24 2 1 26 26 C 1.54946 * 110.30809 * 62.83430 * 24 2 1 27 27 C 1.55310 * 100.94407 * 155.36216 * 26 24 2 28 28 C 1.54380 * 102.24753 * 325.86474 * 27 26 24 29 29 O 1.43232 * 107.59228 * 21.35868 * 28 27 26 30 30 H 1.09006 * 109.47465 * 60.00243 * 1 2 3 31 31 H 1.08998 * 109.47089 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47584 * 300.00244 * 1 2 3 33 33 H 0.96998 * 120.00302 * 359.97438 * 6 4 2 34 34 H 1.09002 * 110.40594 * 205.98201 * 11 9 7 35 35 H 1.09000 * 110.40263 * 328.41155 * 11 9 7 36 36 H 0.96997 * 120.00002 * 179.97438 * 16 15 13 37 37 H 1.08995 * 110.40565 * 158.36516 * 21 12 11 38 38 H 1.08999 * 110.40604 * 280.68438 * 21 12 11 39 39 H 1.09002 * 111.12419 * 273.27945 * 26 24 2 40 40 H 1.09003 * 111.12907 * 37.43894 * 26 24 2 41 41 H 1.09000 * 110.84293 * 207.67654 * 27 26 24 42 42 H 1.08996 * 110.84527 * 84.05758 * 27 26 24 43 43 H 1.09001 * 109.83184 * 261.84098 * 28 27 26 44 44 H 1.09002 * 109.82765 * 140.87175 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 2.1946 -0.9408 3.6507 8 1 2.6744 -1.9035 3.4741 9 6 1.3810 -0.7838 4.9369 10 1 0.4292 -0.2532 4.9094 11 6 1.5896 -1.8213 6.0612 12 7 2.7258 -1.2928 6.8514 13 6 2.8793 -1.3030 8.2121 14 1 3.6223 -0.6715 8.6764 15 6 2.0800 -2.1249 8.9946 16 7 1.3027 -3.0220 8.4258 17 14 2.1075 -1.9581 10.8549 18 1 1.0801 -0.9733 11.2789 19 1 1.8158 -3.2757 11.4745 20 1 3.4488 -1.4924 11.2903 21 6 3.6580 -0.7507 5.8357 22 6 2.7447 -0.0779 4.7882 23 1 2.8218 1.0011 4.6553 24 6 2.0400 -0.7213 -1.2492 25 1 1.6746 -1.7480 -1.2681 26 6 1.5937 0.0343 -2.5263 27 6 2.6824 -0.4232 -3.5350 28 6 3.9299 -0.5515 -2.6347 29 8 3.4759 -0.7022 -1.2847 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.1493 0.5390 2.5436 34 1 0.6963 -1.8942 6.6816 35 1 1.8405 -2.7942 5.6386 36 1 0.7445 -3.5966 8.9727 37 1 4.3253 -0.0158 6.2860 38 1 4.2334 -1.5562 5.3795 39 1 0.6022 -0.2864 -2.8461 40 1 1.6260 1.1134 -2.3759 41 1 2.8370 0.3306 -4.3071 42 1 2.4222 -1.3850 -3.9768 43 1 4.5421 0.3463 -2.7209 44 1 4.5103 -1.4258 -2.9295 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026027304.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:54 Heat of formation + Delta-G solvation = -50.375848 kcal Electronic energy + Delta-G solvation = -23744.757971 eV Core-core repulsion = 20276.680160 eV Total energy + Delta-G solvation = -3468.077811 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.41699 -40.44348 -39.44287 -36.06726 -35.15917 -34.09892 -32.83326 -31.98891 -28.98768 -28.91247 -27.64393 -25.73282 -23.83933 -22.77098 -22.18641 -21.93377 -20.92384 -20.79307 -18.89037 -18.26630 -17.75598 -17.38628 -16.85542 -16.59967 -16.20249 -15.84400 -15.47634 -15.15536 -14.92775 -14.65943 -14.16108 -14.11152 -13.76907 -13.38535 -13.35738 -13.20661 -13.12876 -12.90289 -12.72158 -12.57007 -12.49061 -12.14248 -12.04266 -12.03650 -11.94079 -11.87354 -11.66675 -11.62257 -10.91118 -10.77135 -10.63939 -10.41617 -9.67952 -8.94513 -7.92852 -5.30419 1.46462 1.48718 1.57851 1.61737 1.99162 2.47881 2.83796 2.89761 3.27445 3.54098 3.56702 3.66698 3.81866 3.83020 3.92344 4.01687 4.12712 4.14821 4.17931 4.35626 4.37387 4.49045 4.50986 4.56731 4.80448 4.84991 4.86101 4.89306 4.92784 4.96127 4.97217 5.02671 5.10096 5.26334 5.26974 5.33464 5.40628 5.44331 5.55673 5.62687 6.14849 6.21015 6.58053 6.98611 7.30668 7.65222 8.44104 9.21183 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.044508 B = 0.002694 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.946655 B =10389.517523 C =10626.565874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.124 0.876 4 C 0.513 3.487 5 O -0.576 6.576 6 N -0.684 5.684 7 C 0.115 3.885 8 H 0.097 0.903 9 C -0.175 4.175 10 H 0.130 0.870 11 C 0.188 3.812 12 N -0.616 5.616 13 C -0.242 4.242 14 H 0.083 0.917 15 C -0.064 4.064 16 N -0.949 5.949 17 Si 0.985 3.015 18 H -0.282 1.282 19 H -0.295 1.295 20 H -0.267 1.267 21 C 0.148 3.852 22 C -0.167 4.167 23 H 0.136 0.864 24 C 0.091 3.909 25 H 0.053 0.947 26 C -0.140 4.140 27 C -0.150 4.150 28 C 0.035 3.965 29 O -0.403 6.403 30 H 0.100 0.900 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.417 0.583 34 H 0.061 0.939 35 H -0.008 1.008 36 H 0.251 0.749 37 H 0.064 0.936 38 H 0.014 0.986 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.821 12.154 -24.957 28.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 H 0.142 0.858 4 C 0.301 3.699 5 O -0.454 6.454 6 N -0.335 5.335 7 C 0.008 3.992 8 H 0.115 0.885 9 C -0.196 4.196 10 H 0.148 0.852 11 C 0.062 3.938 12 N -0.340 5.340 13 C -0.371 4.371 14 H 0.101 0.899 15 C -0.257 4.257 16 N -0.597 5.597 17 Si 0.812 3.188 18 H -0.208 1.208 19 H -0.221 1.221 20 H -0.192 1.192 21 C 0.022 3.978 22 C -0.188 4.188 23 H 0.154 0.846 24 C 0.033 3.967 25 H 0.071 0.929 26 C -0.177 4.177 27 C -0.187 4.187 28 C -0.041 4.041 29 O -0.323 6.323 30 H 0.119 0.881 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.255 0.745 34 H 0.080 0.920 35 H 0.010 0.990 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.032 0.968 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.123 0.877 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.247 11.329 -24.645 27.318 hybrid contribution -0.049 -0.395 1.186 1.251 sum -3.295 10.935 -23.459 26.091 Atomic orbital electron populations 1.21819 0.89421 1.03267 1.05262 1.21580 0.99342 1.01255 0.89869 0.85800 1.21362 0.79086 0.84203 0.85246 1.90720 1.39080 1.28497 1.87126 1.45214 1.52979 1.31706 1.03609 1.21317 1.00520 0.96588 0.80792 0.88498 1.24325 0.96274 1.03181 0.95798 0.85182 1.20805 0.92211 0.91271 0.89498 1.45489 1.17949 1.69171 1.01440 1.19417 1.18297 1.18437 0.80929 0.89907 1.25804 1.00353 0.96530 1.03045 1.70108 1.30777 1.23396 1.35390 0.84995 0.78261 0.76524 0.79019 1.20829 1.22139 1.19198 1.21241 0.91999 0.95508 0.89040 1.24263 0.96546 0.99489 0.98519 0.84638 1.22864 0.80849 0.98280 0.94665 0.92897 1.23349 1.00461 1.01659 0.92255 1.23128 0.93644 1.03414 0.98556 1.23323 0.97753 1.01352 0.81664 1.88566 1.21450 1.94733 1.27541 0.88097 0.92816 0.90112 0.74539 0.92027 0.99006 0.94038 0.91786 0.96817 0.87587 0.88448 0.87721 0.90328 0.90631 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.89 71.98 0.64 -0.91 16 2 C -0.10 -1.77 2.50 -11.54 -0.03 -1.80 16 3 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 4 C 0.51 14.70 7.03 87.65 0.62 15.31 16 5 O -0.58 -23.03 14.96 13.03 0.19 -22.84 16 6 N -0.68 -17.86 5.46 -442.52 -2.41 -20.27 16 7 C 0.12 4.03 5.98 44.99 0.27 4.30 16 8 H 0.10 4.13 7.40 -2.38 -0.02 4.11 16 9 C -0.17 -6.62 7.06 -9.89 -0.07 -6.69 16 10 H 0.13 4.22 8.14 -2.39 -0.02 4.20 16 11 C 0.19 9.61 5.70 86.54 0.49 10.10 16 12 N -0.62 -33.03 3.38 -688.14 -2.33 -35.35 16 13 C -0.24 -13.88 10.35 84.03 0.87 -13.01 16 14 H 0.08 4.51 7.85 -2.91 -0.02 4.49 16 15 C -0.06 -3.68 5.40 84.86 0.46 -3.22 16 16 N -0.95 -58.15 10.86 21.65 0.24 -57.92 16 17 Si 0.98 45.96 29.56 68.60 2.03 47.99 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 21 C 0.15 6.52 7.04 86.54 0.61 7.13 16 22 C -0.17 -5.95 7.06 -9.88 -0.07 -6.02 16 23 H 0.14 3.98 8.14 -2.39 -0.02 3.96 16 24 C 0.09 1.82 2.46 31.26 0.08 1.90 16 25 H 0.05 1.27 8.13 -2.39 -0.02 1.25 16 26 C -0.14 -1.44 5.55 32.05 0.18 -1.26 16 27 C -0.15 -1.62 7.02 31.86 0.22 -1.40 16 28 C 0.04 0.64 7.79 72.45 0.56 1.20 16 29 O -0.40 -10.82 10.09 -132.93 -1.34 -12.16 16 30 H 0.10 0.54 7.28 -2.38 -0.02 0.52 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 0.71 7.56 -2.39 -0.02 0.69 16 33 H 0.42 7.53 8.24 -92.71 -0.76 6.77 16 34 H 0.06 3.48 6.51 -2.39 -0.02 3.47 16 35 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 36 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 37 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.11 0.67 8.05 -2.39 -0.02 0.65 16 40 H 0.10 0.71 8.06 -2.39 -0.02 0.69 16 41 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -79.01 352.40 1.43 -77.58 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.22 Total: 17.32 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 4.83 Total: 5.65 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -4.50 Total: -113.54 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -1.15 Total: -34.99 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -79.01 1.43 -77.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026027304.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.201 kcal (2) G-P(sol) polarization free energy of solvation -79.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds