Wall clock time and date at job start Tue Mar 31 2020 03:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.48461 * 2 1 4 4 C 1.53096 * 109.48036 * 120.03258 * 2 1 3 5 5 C 1.53181 * 109.16619 * 177.58747 * 4 2 1 6 6 H 1.08998 * 109.54268 * 183.06335 * 5 4 2 7 7 C 1.50706 * 109.53920 * 62.88559 * 5 4 2 8 8 O 1.21277 * 119.99888 * 0.02562 * 7 5 4 9 9 N 1.34770 * 119.99525 * 179.97438 * 7 5 4 10 10 C 1.46509 * 119.99496 * 180.02562 * 9 7 5 11 11 H 1.08994 * 115.51580 * 350.42221 * 10 9 7 12 12 C 1.52999 * 117.44021 * 204.99997 * 10 9 7 13 13 H 1.08998 * 119.54091 * 5.72008 * 12 10 9 14 14 C 1.54392 * 118.12145 * 160.81072 * 12 10 9 15 15 N 1.48145 * 104.61429 * 87.19347 * 14 12 10 16 16 C 1.36942 * 127.83935 * 140.41866 * 15 14 12 17 17 H 1.08004 * 119.99185 * 344.38712 * 16 15 14 18 18 C 1.38802 * 120.00464 * 164.38541 * 16 15 14 19 19 N 1.31624 * 120.00102 * 350.81411 * 18 16 15 20 20 Si 1.86796 * 120.00380 * 170.81521 * 18 16 15 21 21 H 1.48496 * 109.47432 * 94.81000 * 20 18 16 22 22 H 1.48501 * 109.47413 * 214.81359 * 20 18 16 23 23 H 1.48503 * 109.46947 * 334.81212 * 20 18 16 24 24 C 1.48151 * 104.32724 * 320.41278 * 15 14 12 25 25 C 1.53003 * 117.43749 * 135.76367 * 10 9 7 26 26 H 1.08997 * 119.54195 * 355.88569 * 25 10 9 27 27 C 1.53181 * 109.03634 * 303.02362 * 5 4 2 28 28 C 1.53089 * 109.16496 * 56.97648 * 27 5 4 29 29 O 1.42901 * 109.48213 * 239.97256 * 2 1 3 30 30 H 1.08998 * 109.47503 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47095 * 300.02736 * 1 2 3 32 32 H 1.09005 * 109.47112 * 60.02488 * 1 2 3 33 33 H 1.08991 * 109.52284 * 297.49537 * 4 2 1 34 34 H 1.09000 * 109.52124 * 57.68706 * 4 2 1 35 35 H 0.97003 * 120.00774 * 0.02562 * 9 7 5 36 36 H 1.08994 * 110.40941 * 205.97787 * 14 12 10 37 37 H 1.08998 * 110.40430 * 328.41026 * 14 12 10 38 38 H 0.96992 * 120.00209 * 179.97438 * 19 18 16 39 39 H 1.08999 * 110.40408 * 158.36628 * 24 15 14 40 40 H 1.08995 * 110.40669 * 280.68961 * 24 15 14 41 41 H 1.08998 * 109.51951 * 297.06879 * 27 5 4 42 42 H 1.09001 * 109.52069 * 176.88371 * 27 5 4 43 43 H 1.08997 * 109.48184 * 182.40504 * 28 27 5 44 44 H 1.09004 * 109.48004 * 62.37217 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0405 -0.7224 1.2495 5 6 3.5711 -0.7711 1.2122 6 1 3.9391 -1.3316 2.0715 7 6 4.1211 0.6314 1.2518 8 8 3.3649 1.5781 1.3053 9 7 5.4534 0.8335 1.2290 10 6 5.9882 2.1970 1.2681 11 1 5.2531 2.9931 1.1511 12 6 7.3778 2.4267 0.6705 13 1 7.8837 1.6093 0.1567 14 6 7.7758 3.8683 0.2872 15 7 8.3411 4.4431 1.5301 16 6 9.4273 5.2675 1.6562 17 1 10.1249 5.3703 0.8381 18 6 9.6316 5.9709 2.8352 19 7 8.6959 5.9902 3.7607 20 14 11.2345 6.8902 3.1086 21 1 11.0672 8.3087 2.7024 22 1 11.6026 6.8270 4.5458 23 1 12.3083 6.2657 2.2947 24 6 7.4647 3.9238 2.6058 25 6 7.1727 2.4632 2.1992 26 1 7.5368 1.6659 2.8471 27 6 4.0176 -1.4602 -0.0810 28 6 3.4307 -0.7094 -1.2791 29 8 2.0065 -0.6742 -1.1664 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5143 0.8897 32 1 -0.3633 0.5135 -0.8902 33 1 1.7148 -0.1845 2.1398 34 1 1.6442 -1.7376 1.2708 35 1 6.0583 0.0764 1.1866 36 1 8.5269 3.8580 -0.5026 37 1 6.8989 4.4335 -0.0284 38 1 8.8388 6.4814 4.5847 39 1 7.9812 3.9552 3.5651 40 1 6.5401 4.4989 2.6536 41 1 3.6612 -2.4903 -0.0865 42 1 5.1058 -1.4500 -0.1421 43 1 3.7100 -1.2202 -2.2005 44 1 3.8192 0.3089 -1.2957 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026125633.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:26 Heat of formation + Delta-G solvation = -52.088004 kcal Electronic energy + Delta-G solvation = -24194.714433 eV Core-core repulsion = 20726.562378 eV Total energy + Delta-G solvation = -3468.152055 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.78976 -40.43507 -39.03825 -36.13144 -34.94311 -34.21372 -33.53180 -31.99259 -28.96296 -28.84369 -27.73020 -25.78947 -24.07370 -23.29798 -22.43001 -21.95873 -20.94232 -20.50101 -18.89008 -17.76964 -17.72388 -17.26259 -17.05141 -16.74323 -16.14879 -15.83337 -15.45844 -15.19886 -14.94920 -14.76381 -14.66375 -13.85767 -13.64589 -13.48252 -13.42107 -13.28749 -13.16442 -12.92540 -12.90020 -12.77167 -12.73162 -12.16018 -12.06394 -12.03143 -11.90128 -11.72271 -11.65905 -11.43497 -10.90483 -10.81952 -10.70253 -10.24205 -9.70725 -8.94804 -7.93636 -5.31042 1.46052 1.47372 1.51182 1.57657 1.95078 2.47308 2.82583 2.86634 3.26749 3.49138 3.59947 3.68843 3.79036 3.83925 3.91025 3.98049 4.08652 4.12629 4.30387 4.36329 4.43678 4.49084 4.55366 4.69201 4.72242 4.78954 4.82097 4.85789 4.90912 4.96490 4.97348 5.06263 5.10432 5.24435 5.25996 5.30930 5.40277 5.43790 5.53717 5.61826 6.14255 6.31582 6.51283 6.97720 7.22344 7.65113 8.43358 9.20373 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.037866 B = 0.002965 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.272920 B = 9442.200190 C = 9628.228283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.069 3.931 3 H 0.050 0.950 4 C -0.126 4.126 5 C -0.106 4.106 6 H 0.133 0.867 7 C 0.513 3.487 8 O -0.577 6.577 9 N -0.681 5.681 10 C 0.117 3.883 11 H 0.100 0.900 12 C -0.158 4.158 13 H 0.143 0.857 14 C 0.147 3.853 15 N -0.617 5.617 16 C -0.242 4.242 17 H 0.085 0.915 18 C -0.064 4.064 19 N -0.949 5.949 20 Si 0.983 3.017 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.264 1.264 24 C 0.189 3.811 25 C -0.184 4.184 26 H 0.123 0.877 27 C -0.138 4.138 28 C 0.050 3.950 29 O -0.396 6.396 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.418 0.582 36 H 0.067 0.933 37 H 0.016 0.984 38 H 0.250 0.750 39 H 0.057 0.943 40 H -0.009 1.009 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.115 0.885 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.352 -20.769 -7.312 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.012 3.988 3 H 0.068 0.932 4 C -0.164 4.164 5 C -0.127 4.127 6 H 0.151 0.849 7 C 0.302 3.698 8 O -0.456 6.456 9 N -0.331 5.331 10 C 0.009 3.991 11 H 0.118 0.882 12 C -0.179 4.179 13 H 0.161 0.839 14 C 0.021 3.979 15 N -0.341 5.341 16 C -0.371 4.371 17 H 0.102 0.898 18 C -0.258 4.258 19 N -0.597 5.597 20 Si 0.810 3.190 21 H -0.214 1.214 22 H -0.219 1.219 23 H -0.189 1.189 24 C 0.063 3.937 25 C -0.205 4.205 26 H 0.141 0.859 27 C -0.176 4.176 28 C -0.026 4.026 29 O -0.316 6.316 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.256 0.744 36 H 0.085 0.915 37 H 0.034 0.966 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.009 0.991 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.133 0.867 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -10.881 -20.019 -7.278 23.919 hybrid contribution 1.144 1.085 0.701 1.725 sum -9.737 -18.934 -6.577 22.284 Atomic orbital electron populations 1.21733 0.92222 1.03221 1.02511 1.22353 0.95947 0.95519 0.85001 0.93212 1.22003 0.93247 1.02580 0.98552 1.21533 0.97238 0.91318 1.02599 0.84931 1.21368 0.81683 0.92521 0.74272 1.90670 1.58412 1.45801 1.50749 1.45216 1.07080 1.06999 1.73821 1.21333 0.89680 0.85936 1.02135 0.88235 1.24192 0.97904 0.99307 0.96480 0.83916 1.21285 0.96061 0.90810 0.89746 1.45491 1.31554 1.55102 1.01952 1.19425 0.99209 1.17617 1.00813 0.89764 1.25798 1.01704 1.00479 0.97780 1.70114 1.34100 1.46554 1.08931 0.85009 0.79005 0.78093 0.76850 1.21386 1.21884 1.18886 1.20750 0.91519 0.88079 0.93319 1.24391 1.02773 0.99235 0.94113 0.85886 1.22216 1.02716 1.00995 0.91656 1.22735 0.80736 0.99062 1.00102 1.87867 1.21743 1.78011 1.43952 0.90827 0.90561 0.92558 0.91032 0.88197 0.74433 0.91493 0.96620 0.94107 0.92482 0.99086 0.87572 0.88123 0.86685 0.95536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.56 71.98 0.69 -1.90 16 2 C 0.07 1.56 2.98 30.62 0.09 1.65 16 3 H 0.05 1.49 5.80 -2.39 -0.01 1.47 16 4 C -0.13 -2.25 4.56 30.69 0.14 -2.11 16 5 C -0.11 -1.68 3.04 -11.42 -0.03 -1.71 16 6 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 7 C 0.51 12.79 5.82 87.66 0.51 13.30 16 8 O -0.58 -20.01 13.41 -3.02 -0.04 -20.05 16 9 N -0.68 -15.64 5.44 -442.52 -2.41 -18.05 16 10 C 0.12 3.75 5.98 44.99 0.27 4.01 16 11 H 0.10 3.92 7.40 -2.39 -0.02 3.90 16 12 C -0.16 -5.13 7.06 -9.89 -0.07 -5.20 16 13 H 0.14 3.58 8.14 -2.39 -0.02 3.56 16 14 C 0.15 6.07 7.04 86.54 0.61 6.68 16 15 N -0.62 -32.19 3.38 -688.15 -2.33 -34.52 16 16 C -0.24 -13.61 10.35 84.03 0.87 -12.75 16 17 H 0.08 4.48 7.85 -2.91 -0.02 4.46 16 18 C -0.06 -3.66 5.40 84.86 0.46 -3.20 16 19 N -0.95 -57.87 10.87 21.65 0.24 -57.64 16 20 Si 0.98 45.48 29.56 68.60 2.03 47.51 16 21 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 24 C 0.19 9.54 5.70 86.53 0.49 10.04 16 25 C -0.18 -6.78 7.06 -9.88 -0.07 -6.85 16 26 H 0.12 4.02 8.14 -2.39 -0.02 4.00 16 27 C -0.14 -1.62 5.57 30.68 0.17 -1.45 16 28 C 0.05 0.89 6.62 72.01 0.48 1.36 16 29 O -0.40 -8.94 10.41 -148.98 -1.55 -10.49 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 1.07 8.14 -2.38 -0.02 1.06 16 33 H 0.07 1.42 8.02 -2.39 -0.02 1.40 16 34 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.42 6.36 8.24 -92.71 -0.76 5.59 16 36 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 39 H 0.06 3.23 6.52 -2.39 -0.02 3.21 16 40 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 41 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.10 0.76 7.52 -2.39 -0.02 0.74 16 43 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.03 0.59 7.38 -2.39 -0.02 0.58 16 Total: -1.00 -74.07 345.86 0.77 -73.30 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.23 Total: 18.04 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 4.60 Total: 1.89 kcal Atomic # 7 Polarization: -105.70 SS G_CDS: -4.50 Total: -110.20 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -1.59 Total: -30.54 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -74.07 0.77 -73.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026125633.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.213 kcal (2) G-P(sol) polarization free energy of solvation -74.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds