Wall clock time and date at job start Tue Mar 31 2020 03:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 110.54966 * 2 1 4 4 C 1.55220 * 110.77830 * 122.86664 * 2 1 3 5 5 C 1.54816 * 101.98672 * 155.50081 * 4 2 1 6 6 H 1.08997 * 110.48795 * 98.00629 * 5 4 2 7 7 C 1.50700 * 110.48499 * 220.51746 * 5 4 2 8 8 O 1.21283 * 120.00023 * 358.15681 * 7 5 4 9 9 N 1.34774 * 119.99673 * 178.15294 * 7 5 4 10 10 C 1.47163 * 120.71130 * 0.02562 * 9 7 5 11 11 C 1.53887 * 108.02880 * 132.73141 * 10 9 7 12 12 H 1.09005 * 112.09234 * 182.54489 * 11 10 9 13 13 C 1.54544 * 107.83200 * 306.50649 * 11 10 9 14 14 C 1.54276 * 104.84925 * 89.07659 * 13 11 10 15 15 C 1.54542 * 104.85054 * 359.97438 * 14 13 11 16 16 H 1.08995 * 112.18948 * 147.02794 * 15 14 13 17 17 C 1.47165 * 120.70933 * 179.97438 * 9 7 5 18 18 N 1.48304 * 107.20906 * 58.36650 * 11 10 9 19 19 C 1.36937 * 128.08153 * 106.74465 * 18 11 10 20 20 H 1.08007 * 119.99784 * 14.76998 * 19 18 11 21 21 C 1.38810 * 120.00372 * 194.77571 * 19 18 11 22 22 N 1.31624 * 120.00047 * 9.26226 * 21 19 18 23 23 Si 1.86795 * 120.00198 * 189.26132 * 21 19 18 24 24 H 1.48503 * 109.47173 * 90.00020 * 23 21 19 25 25 H 1.48500 * 109.47359 * 209.99746 * 23 21 19 26 26 H 1.48505 * 109.47327 * 330.00007 * 23 21 19 27 27 C 1.54102 * 104.30307 * 339.26030 * 5 4 2 28 28 O 1.43745 * 107.29466 * 357.90737 * 27 5 4 29 29 H 1.08992 * 109.47303 * 181.42219 * 1 2 3 30 30 H 1.09005 * 109.46673 * 301.42620 * 1 2 3 31 31 H 1.09004 * 109.47199 * 61.42408 * 1 2 3 32 32 H 1.08999 * 110.89408 * 37.36683 * 4 2 1 33 33 H 1.09005 * 111.02276 * 273.69252 * 4 2 1 34 34 H 1.09002 * 109.75365 * 252.36525 * 10 9 7 35 35 H 1.08998 * 109.74739 * 13.04899 * 10 9 7 36 36 H 1.09008 * 110.36155 * 207.91704 * 13 11 10 37 37 H 1.08995 * 110.36411 * 330.11997 * 13 11 10 38 38 H 1.09004 * 110.36116 * 241.15083 * 14 13 11 39 39 H 1.08995 * 110.36502 * 118.84049 * 14 13 11 40 40 H 1.09002 * 109.74497 * 107.63004 * 17 9 7 41 41 H 1.08997 * 109.79164 * 346.92587 * 17 9 7 42 42 H 0.96994 * 120.00171 * 179.97438 * 22 21 19 43 43 H 1.09004 * 109.87753 * 117.32887 * 27 5 4 44 44 H 1.08993 * 109.87512 * 238.47879 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0807 -0.7876 1.2190 5 6 3.4832 -1.2129 0.7200 6 1 4.2450 -0.5297 1.0953 7 6 3.7882 -2.6261 1.1455 8 8 2.9887 -3.2430 1.8172 9 7 4.9493 -3.2042 0.7794 10 6 5.9306 -2.4698 -0.0350 11 6 7.3161 -2.6523 0.6093 12 1 8.0904 -2.0958 0.0811 13 6 7.2067 -2.2346 2.0932 14 6 6.7999 -3.5232 2.8376 15 6 6.6998 -4.6023 1.7359 16 1 6.9865 -5.5892 2.0991 17 6 5.2634 -4.5831 1.1866 18 7 7.5897 -4.1091 0.6565 19 6 8.4607 -4.8304 -0.1156 20 1 9.2160 -4.3217 -0.6964 21 6 8.3730 -6.2152 -0.1520 22 7 7.3477 -6.8246 0.4047 23 14 9.7100 -7.2141 -0.9911 24 1 10.7661 -7.5550 -0.0044 25 1 9.1239 -8.4632 -1.5402 26 1 10.3030 -6.4182 -2.0958 27 6 3.3852 -1.1210 -0.8151 28 8 2.0384 -0.7335 -1.1349 29 1 -0.3633 -1.0273 0.0255 30 1 -0.3633 0.5359 0.8770 31 1 -0.3634 0.4916 -0.9025 32 1 1.4619 -1.6597 1.4300 33 1 2.1582 -0.1457 2.0966 34 1 5.9405 -2.8694 -1.0491 35 1 5.6711 -1.4115 -0.0588 36 1 8.1686 -1.8737 2.4575 37 1 6.4431 -1.4666 2.2157 38 1 5.8348 -3.3901 3.3266 39 1 7.5616 -3.7959 3.5680 40 1 5.1895 -5.2472 0.3254 41 1 4.5685 -4.9064 1.9616 42 1 7.2862 -7.7922 0.3790 43 1 4.0845 -0.3720 -1.1869 44 1 3.6072 -2.0912 -1.2594 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029367155.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:36 Heat of formation + Delta-G solvation = -45.442030 kcal Electronic energy + Delta-G solvation = -25596.429854 eV Core-core repulsion = 22128.565990 eV Total energy + Delta-G solvation = -3467.863864 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.57871 -39.12628 -37.53551 -33.90825 -32.46924 -32.34927 -31.79465 -30.41620 -29.29793 -26.53655 -25.99717 -24.01372 -23.86246 -22.46397 -21.25919 -19.78224 -19.48272 -18.53256 -17.29272 -16.76346 -16.07045 -15.82171 -15.40059 -15.16518 -14.69459 -14.33398 -13.88247 -13.75079 -13.27709 -13.14216 -12.96038 -12.81489 -12.46033 -12.29122 -11.94664 -11.83166 -11.78220 -11.59062 -11.22238 -11.09505 -11.06460 -10.92454 -10.87842 -10.78597 -10.37887 -10.08159 -9.93108 -9.79464 -9.67341 -9.58654 -9.22207 -8.81335 -8.09174 -6.88954 -5.87372 -3.23538 3.01541 3.33728 3.39310 3.41454 3.51094 3.78937 4.37314 4.40707 4.63876 4.83683 4.95080 5.01391 5.10181 5.24343 5.28483 5.33280 5.48184 5.54277 5.55649 5.62541 5.68330 5.70378 5.78189 5.79386 5.88168 5.90709 6.00602 6.16990 6.18522 6.28073 6.35599 6.48366 6.59548 6.66160 6.75562 6.82676 6.84173 6.95141 7.26195 7.46729 7.66220 8.03935 8.09829 8.64891 9.01705 9.64015 10.39868 11.25388 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026812 B = 0.004377 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.042477 B = 6394.938174 C = 6572.583841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.070 3.930 3 H 0.068 0.932 4 C -0.134 4.134 5 C -0.145 4.145 6 H 0.105 0.895 7 C 0.515 3.485 8 O -0.554 6.554 9 N -0.589 5.589 10 C 0.092 3.908 11 C 0.134 3.866 12 H 0.079 0.921 13 C -0.123 4.123 14 C -0.137 4.137 15 C 0.169 3.831 16 H 0.119 0.881 17 C 0.111 3.889 18 N -0.583 5.583 19 C -0.229 4.229 20 H 0.077 0.923 21 C -0.002 4.002 22 N -0.912 5.912 23 Si 0.913 3.087 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.061 3.939 28 O -0.373 6.373 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.256 0.744 43 H 0.067 0.933 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.888 13.797 1.093 15.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.013 3.987 3 H 0.086 0.914 4 C -0.172 4.172 5 C -0.167 4.167 6 H 0.123 0.877 7 C 0.302 3.698 8 O -0.434 6.434 9 N -0.320 5.320 10 C -0.034 4.034 11 C 0.025 3.975 12 H 0.097 0.903 13 C -0.162 4.162 14 C -0.176 4.176 15 C 0.061 3.939 16 H 0.137 0.863 17 C -0.012 4.012 18 N -0.304 5.304 19 C -0.357 4.357 20 H 0.095 0.905 21 C -0.199 4.199 22 N -0.558 5.558 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 C -0.017 4.017 28 O -0.292 6.292 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.310 13.128 1.140 15.069 hybrid contribution 0.928 -0.449 -0.320 1.079 sum -6.382 12.679 0.820 14.218 Atomic orbital electron populations 1.21758 0.93123 1.03156 1.02213 1.23202 0.95341 0.95077 0.85124 0.91363 1.23190 0.94630 1.01542 0.97869 1.22678 1.00019 0.96465 0.97514 0.87728 1.20126 0.81609 0.87761 0.80346 1.90630 1.47487 1.65025 1.40219 1.48208 1.16743 1.15900 1.51192 1.22627 0.91128 0.94449 0.95175 1.21941 0.93005 0.88533 0.94029 0.90299 1.22481 0.99605 0.97181 0.96930 1.22641 0.99530 0.96750 0.98696 1.21873 0.87718 0.97787 0.86513 0.86337 1.22444 0.98272 0.79771 1.00685 1.45156 1.46157 1.00973 1.38133 1.19001 1.06969 0.88497 1.21257 0.90519 1.24839 0.97750 0.96718 1.00591 1.69835 1.28699 1.08542 1.48742 0.86120 0.80984 0.79704 0.78895 1.21566 1.21703 1.20650 1.23180 0.84673 1.01234 0.92566 1.88893 1.27644 1.73751 1.38927 0.91598 0.91137 0.91936 0.88401 0.90079 0.91451 0.91717 0.92614 0.93175 0.92891 0.92795 0.90253 0.91299 0.93422 0.91470 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.67 37.16 0.36 -1.03 16 2 C 0.07 0.78 3.97 -25.55 -0.10 0.68 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 4 C -0.13 -1.67 5.97 -24.60 -0.15 -1.82 16 5 C -0.15 -1.96 2.49 -90.24 -0.22 -2.18 16 6 H 0.10 1.19 7.58 -51.93 -0.39 0.80 16 7 C 0.51 9.20 6.89 -10.99 -0.08 9.12 16 8 O -0.55 -11.71 14.91 5.56 0.08 -11.63 16 9 N -0.59 -10.95 2.23 -171.58 -0.38 -11.33 16 10 C 0.09 1.52 4.69 -3.22 -0.02 1.51 16 11 C 0.13 2.46 4.32 -65.66 -0.28 2.18 16 12 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 13 C -0.12 -2.07 6.18 -25.25 -0.16 -2.22 16 14 C -0.14 -2.61 6.18 -25.25 -0.16 -2.76 16 15 C 0.17 3.77 3.11 -65.69 -0.20 3.56 16 16 H 0.12 3.03 6.36 -51.93 -0.33 2.70 16 17 C 0.11 2.42 5.81 -3.26 -0.02 2.41 16 18 N -0.58 -13.47 2.81 -152.63 -0.43 -13.90 16 19 C -0.23 -5.87 10.37 -15.06 -0.16 -6.03 16 20 H 0.08 1.91 7.85 -52.48 -0.41 1.50 16 21 C 0.00 -0.04 5.42 -17.43 -0.09 -0.14 16 22 N -0.91 -24.86 10.44 55.49 0.58 -24.28 16 23 Si 0.91 21.00 29.56 -169.99 -5.03 15.98 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 C 0.06 0.80 5.84 37.73 0.22 1.02 16 28 O -0.37 -5.26 11.23 -35.23 -0.40 -5.66 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.10 1.45 6.82 -51.93 -0.35 1.10 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.06 0.85 5.29 -51.93 -0.27 0.57 16 36 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 37 H 0.05 0.75 7.84 -51.93 -0.41 0.35 16 38 H 0.05 1.00 7.84 -51.93 -0.41 0.59 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.08 1.98 7.85 -51.93 -0.41 1.57 16 41 H 0.07 1.53 7.11 -51.93 -0.37 1.16 16 42 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 43 H 0.07 0.73 7.93 -51.93 -0.41 0.31 16 44 H 0.09 1.32 7.12 -51.93 -0.37 0.95 16 LS Contribution 334.62 15.07 5.04 5.04 Total: -1.00 -29.42 334.62 -8.66 -38.08 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.08 Total: 3.40 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -1.05 Total: 4.30 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -0.23 Total: -49.51 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.31 Total: -17.28 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.42 -8.66 -38.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029367155.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.361 kcal (2) G-P(sol) polarization free energy of solvation -29.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds