Wall clock time and date at job start Tue Mar 31 2020 03:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 110.54966 * 2 1 4 4 C 1.55220 * 110.77830 * 122.86664 * 2 1 3 5 5 C 1.54816 * 101.98672 * 155.50081 * 4 2 1 6 6 H 1.08997 * 110.48795 * 98.00629 * 5 4 2 7 7 C 1.50700 * 110.48499 * 220.51746 * 5 4 2 8 8 O 1.21283 * 120.00023 * 358.15681 * 7 5 4 9 9 N 1.34774 * 119.99673 * 178.15294 * 7 5 4 10 10 C 1.47163 * 120.71130 * 0.02562 * 9 7 5 11 11 C 1.53887 * 108.02880 * 132.73141 * 10 9 7 12 12 H 1.09005 * 112.09234 * 182.54489 * 11 10 9 13 13 C 1.54544 * 107.83200 * 306.50649 * 11 10 9 14 14 C 1.54276 * 104.84925 * 89.07659 * 13 11 10 15 15 C 1.54542 * 104.85054 * 359.97438 * 14 13 11 16 16 H 1.08995 * 112.18948 * 147.02794 * 15 14 13 17 17 C 1.47165 * 120.70933 * 179.97438 * 9 7 5 18 18 N 1.48304 * 107.20906 * 58.36650 * 11 10 9 19 19 C 1.36937 * 128.08153 * 106.74465 * 18 11 10 20 20 H 1.08007 * 119.99784 * 14.76998 * 19 18 11 21 21 C 1.38810 * 120.00372 * 194.77571 * 19 18 11 22 22 N 1.31624 * 120.00047 * 9.26226 * 21 19 18 23 23 Si 1.86795 * 120.00198 * 189.26132 * 21 19 18 24 24 H 1.48503 * 109.47173 * 90.00020 * 23 21 19 25 25 H 1.48500 * 109.47359 * 209.99746 * 23 21 19 26 26 H 1.48505 * 109.47327 * 330.00007 * 23 21 19 27 27 C 1.54102 * 104.30307 * 339.26030 * 5 4 2 28 28 O 1.43745 * 107.29466 * 357.90737 * 27 5 4 29 29 H 1.08992 * 109.47303 * 181.42219 * 1 2 3 30 30 H 1.09005 * 109.46673 * 301.42620 * 1 2 3 31 31 H 1.09004 * 109.47199 * 61.42408 * 1 2 3 32 32 H 1.08999 * 110.89408 * 37.36683 * 4 2 1 33 33 H 1.09005 * 111.02276 * 273.69252 * 4 2 1 34 34 H 1.09002 * 109.75365 * 252.36525 * 10 9 7 35 35 H 1.08998 * 109.74739 * 13.04899 * 10 9 7 36 36 H 1.09008 * 110.36155 * 207.91704 * 13 11 10 37 37 H 1.08995 * 110.36411 * 330.11997 * 13 11 10 38 38 H 1.09004 * 110.36116 * 241.15083 * 14 13 11 39 39 H 1.08995 * 110.36502 * 118.84049 * 14 13 11 40 40 H 1.09002 * 109.74497 * 107.63004 * 17 9 7 41 41 H 1.08997 * 109.79164 * 346.92587 * 17 9 7 42 42 H 0.96994 * 120.00171 * 179.97438 * 22 21 19 43 43 H 1.09004 * 109.87753 * 117.32887 * 27 5 4 44 44 H 1.08993 * 109.87512 * 238.47879 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0807 -0.7876 1.2190 5 6 3.4832 -1.2129 0.7200 6 1 4.2450 -0.5297 1.0953 7 6 3.7882 -2.6261 1.1455 8 8 2.9887 -3.2430 1.8172 9 7 4.9493 -3.2042 0.7794 10 6 5.9306 -2.4698 -0.0350 11 6 7.3161 -2.6523 0.6093 12 1 8.0904 -2.0958 0.0811 13 6 7.2067 -2.2346 2.0932 14 6 6.7999 -3.5232 2.8376 15 6 6.6998 -4.6023 1.7359 16 1 6.9865 -5.5892 2.0991 17 6 5.2634 -4.5831 1.1866 18 7 7.5897 -4.1091 0.6565 19 6 8.4607 -4.8304 -0.1156 20 1 9.2160 -4.3217 -0.6964 21 6 8.3730 -6.2152 -0.1520 22 7 7.3477 -6.8246 0.4047 23 14 9.7100 -7.2141 -0.9911 24 1 10.7661 -7.5550 -0.0044 25 1 9.1239 -8.4632 -1.5402 26 1 10.3030 -6.4182 -2.0958 27 6 3.3852 -1.1210 -0.8151 28 8 2.0384 -0.7335 -1.1349 29 1 -0.3633 -1.0273 0.0255 30 1 -0.3633 0.5359 0.8770 31 1 -0.3634 0.4916 -0.9025 32 1 1.4619 -1.6597 1.4300 33 1 2.1582 -0.1457 2.0966 34 1 5.9405 -2.8694 -1.0491 35 1 5.6711 -1.4115 -0.0588 36 1 8.1686 -1.8737 2.4575 37 1 6.4431 -1.4666 2.2157 38 1 5.8348 -3.3901 3.3266 39 1 7.5616 -3.7959 3.5680 40 1 5.1895 -5.2472 0.3254 41 1 4.5685 -4.9064 1.9616 42 1 7.2862 -7.7922 0.3790 43 1 4.0845 -0.3720 -1.1869 44 1 3.6072 -2.0912 -1.2594 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029367155.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:36 Heat of formation + Delta-G solvation = -63.340066 kcal Electronic energy + Delta-G solvation = -25597.205971 eV Core-core repulsion = 22128.565990 eV Total energy + Delta-G solvation = -3468.639981 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.93060 -40.37916 -38.96844 -35.53155 -34.22436 -33.43338 -32.86238 -31.86669 -31.04189 -28.00685 -27.05073 -25.72527 -25.36983 -23.76376 -22.15973 -21.25588 -21.08533 -20.08657 -18.70111 -17.94736 -17.60831 -17.02486 -16.74450 -16.53079 -16.37521 -15.61744 -15.44663 -15.09897 -14.70756 -14.54886 -14.40693 -14.19827 -13.56407 -13.44308 -13.34479 -13.18650 -13.10951 -12.90355 -12.78533 -12.64795 -12.59413 -12.21662 -12.07101 -11.97175 -11.82162 -11.78738 -11.51216 -11.43919 -11.12785 -10.95936 -10.70250 -10.46894 -9.74190 -8.71750 -7.85089 -5.20986 1.48873 1.49852 1.57747 1.62525 2.07120 2.50988 2.86928 3.32720 3.36258 3.46410 3.56376 3.88252 4.00784 4.09175 4.12252 4.17811 4.25444 4.28461 4.31823 4.39803 4.48539 4.56128 4.63899 4.71529 4.72252 4.86186 4.87055 4.88659 4.98061 5.01537 5.07593 5.08922 5.14578 5.20418 5.29526 5.31251 5.40726 5.53702 5.57790 5.83197 5.94146 6.22231 6.59740 7.05538 7.20302 7.73405 8.51628 9.26441 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026812 B = 0.004377 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.042477 B = 6394.938174 C = 6572.583841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 H 0.100 0.900 4 C -0.134 4.134 5 C -0.137 4.137 6 H 0.143 0.857 7 C 0.510 3.490 8 O -0.594 6.594 9 N -0.591 5.591 10 C 0.097 3.903 11 C 0.126 3.874 12 H 0.099 0.901 13 C -0.111 4.111 14 C -0.129 4.129 15 C 0.166 3.834 16 H 0.077 0.923 17 C 0.128 3.872 18 N -0.605 5.605 19 C -0.230 4.230 20 H 0.085 0.915 21 C -0.058 4.058 22 N -0.940 5.940 23 Si 0.971 3.029 24 H -0.291 1.291 25 H -0.303 1.303 26 H -0.268 1.268 27 C 0.061 3.939 28 O -0.398 6.398 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.051 0.949 35 H 0.115 0.885 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.036 0.964 41 H 0.053 0.947 42 H 0.245 0.755 43 H 0.103 0.897 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.357 17.978 0.931 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.013 3.987 3 H 0.118 0.882 4 C -0.172 4.172 5 C -0.158 4.158 6 H 0.161 0.839 7 C 0.300 3.700 8 O -0.475 6.475 9 N -0.321 5.321 10 C -0.027 4.027 11 C 0.019 3.981 12 H 0.117 0.883 13 C -0.150 4.150 14 C -0.168 4.168 15 C 0.058 3.942 16 H 0.094 0.906 17 C 0.003 3.997 18 N -0.326 5.326 19 C -0.359 4.359 20 H 0.102 0.898 21 C -0.252 4.252 22 N -0.588 5.588 23 Si 0.800 3.200 24 H -0.218 1.218 25 H -0.230 1.230 26 H -0.193 1.193 27 C -0.016 4.016 28 O -0.318 6.318 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.126 0.874 34 H 0.069 0.931 35 H 0.133 0.867 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.121 0.879 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.771 17.371 0.965 18.669 hybrid contribution 0.691 -1.739 -0.261 1.889 sum -6.080 15.631 0.705 16.787 Atomic orbital electron populations 1.21804 0.92447 1.02361 1.03703 1.23443 0.96048 0.95875 0.83364 0.88246 1.23206 0.93415 1.00984 0.99604 1.22770 1.01768 0.93284 0.98009 0.83900 1.21004 0.80364 0.89470 0.79182 1.90618 1.48472 1.66522 1.41921 1.48201 1.17828 1.14576 1.51542 1.22666 0.89695 0.96713 0.93613 1.22266 0.94335 0.85757 0.95704 0.88296 1.22431 1.01396 0.96255 0.94889 1.22512 0.99683 0.96962 0.97642 1.21668 0.87596 0.97120 0.87780 0.90553 1.21905 0.97975 0.81521 0.98312 1.45350 1.45914 1.03222 1.38148 1.19347 1.07139 0.88901 1.20473 0.89772 1.25544 0.99583 0.97943 1.02103 1.70045 1.30383 1.07801 1.50594 0.85193 0.78646 0.77964 0.78158 1.21795 1.22970 1.19261 1.23234 0.85266 1.01189 0.91935 1.88880 1.28218 1.74455 1.40262 0.93622 0.88815 0.91240 0.91688 0.87408 0.93110 0.86714 0.91068 0.90164 0.92829 0.92819 0.94560 0.92851 0.94541 0.87867 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.67 71.98 0.70 -1.76 16 2 C 0.07 1.31 3.97 31.36 0.12 1.44 16 3 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.13 -2.93 5.97 31.98 0.19 -2.74 16 5 C -0.14 -3.20 2.49 -10.55 -0.03 -3.22 16 6 H 0.14 2.30 7.58 -2.39 -0.02 2.29 16 7 C 0.51 17.65 6.89 87.66 0.60 18.26 16 8 O -0.59 -25.43 14.91 -3.04 -0.05 -25.47 16 9 N -0.59 -21.58 2.23 -815.16 -1.82 -23.40 16 10 C 0.10 2.98 4.69 86.55 0.41 3.38 16 11 C 0.13 4.30 4.32 45.47 0.20 4.49 16 12 H 0.10 3.00 8.14 -2.38 -0.02 2.98 16 13 C -0.11 -3.31 6.18 31.55 0.20 -3.12 16 14 C -0.13 -4.78 6.18 31.55 0.20 -4.58 16 15 C 0.17 7.66 3.11 45.43 0.14 7.80 16 16 H 0.08 4.16 6.36 -2.39 -0.02 4.14 16 17 C 0.13 5.84 5.81 86.52 0.50 6.34 16 18 N -0.60 -27.89 2.81 -636.81 -1.79 -29.68 16 19 C -0.23 -11.82 10.37 84.03 0.87 -10.95 16 20 H 0.08 4.11 7.85 -2.91 -0.02 4.09 16 21 C -0.06 -3.11 5.42 84.86 0.46 -2.65 16 22 N -0.94 -54.06 10.44 21.65 0.23 -53.83 16 23 Si 0.97 44.17 29.56 68.60 2.03 46.20 16 24 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 25 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 C 0.06 1.40 5.84 72.35 0.42 1.82 16 28 O -0.40 -10.23 11.23 -148.98 -1.67 -11.90 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.88 6.82 -2.39 -0.02 1.87 16 33 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.12 2.38 5.29 -2.39 -0.01 2.36 16 36 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.08 1.95 7.84 -2.39 -0.02 1.93 16 38 H 0.05 1.96 7.84 -2.39 -0.02 1.94 16 39 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 40 H 0.04 1.94 7.85 -2.39 -0.02 1.93 16 41 H 0.05 2.54 7.11 -2.39 -0.02 2.53 16 42 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 43 H 0.10 1.66 7.93 -2.38 -0.02 1.64 16 44 H 0.06 1.79 7.12 -2.39 -0.02 1.77 16 Total: -1.00 -68.78 334.62 2.89 -65.89 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.98 Total: 17.68 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 4.98 Total: 14.52 kcal Atomic # 7 Polarization: -103.53 SS G_CDS: -3.38 Total: -106.91 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -1.72 Total: -37.38 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -68.78 2.89 -65.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029367155.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.549 kcal (2) G-P(sol) polarization free energy of solvation -68.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds