Wall clock time and date at job start Tue Mar 31 2020 03:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.82938 * 2 1 4 4 C 1.54992 * 110.90810 * 236.35606 * 2 1 3 5 5 O 1.44584 * 103.58691 * 204.85495 * 4 2 1 6 6 C 1.43739 * 106.86544 * 39.87605 * 5 4 2 7 7 H 1.09004 * 109.88133 * 93.17575 * 6 5 4 8 8 C 1.50702 * 109.87840 * 214.17034 * 6 5 4 9 9 O 1.21286 * 119.99451 * 5.04767 * 8 6 5 10 10 N 1.34773 * 120.00360 * 185.04117 * 8 6 5 11 11 C 1.47159 * 120.71069 * 5.00692 * 10 8 6 12 12 C 1.53883 * 108.03341 * 132.77802 * 11 10 8 13 13 H 1.09005 * 112.09400 * 181.90373 * 12 11 10 14 14 C 1.54540 * 108.36874 * 306.25161 * 12 11 10 15 15 C 1.54828 * 104.74386 * 89.17499 * 14 12 11 16 16 C 1.54541 * 104.74406 * 359.97438 * 15 14 12 17 17 H 1.09004 * 112.68080 * 146.81364 * 16 15 14 18 18 C 1.47166 * 120.71017 * 185.02880 * 10 8 6 19 19 N 1.48308 * 107.20736 * 58.36153 * 12 11 10 20 20 C 1.36928 * 128.07857 * 106.09855 * 19 12 11 21 21 H 1.08000 * 120.00229 * 164.93504 * 20 19 12 22 22 C 1.38818 * 120.00164 * 344.92791 * 20 19 12 23 23 N 1.31618 * 119.99651 * 350.24128 * 22 20 19 24 24 Si 1.86803 * 119.99939 * 170.24225 * 22 20 19 25 25 H 1.48502 * 109.46849 * 269.99765 * 24 22 20 26 26 H 1.48495 * 109.47354 * 30.00204 * 24 22 20 27 27 H 1.48499 * 109.46736 * 150.00168 * 24 22 20 28 28 C 1.54097 * 107.42465 * 333.67329 * 6 5 4 29 29 H 1.08998 * 109.46855 * 296.34993 * 1 2 3 30 30 H 1.08996 * 109.47241 * 56.35416 * 1 2 3 31 31 H 1.08999 * 109.47001 * 176.35705 * 1 2 3 32 32 H 1.09006 * 110.61955 * 323.27256 * 4 2 1 33 33 H 1.09000 * 110.62515 * 86.27492 * 4 2 1 34 34 H 1.08998 * 109.74944 * 13.14500 * 11 10 8 35 35 H 1.09000 * 109.74611 * 252.41724 * 11 10 8 36 36 H 1.09003 * 110.36559 * 208.14072 * 14 12 11 37 37 H 1.09004 * 110.36862 * 330.45107 * 14 12 11 38 38 H 1.09004 * 110.30305 * 241.24946 * 15 14 12 39 39 H 1.08996 * 110.61418 * 118.91160 * 15 14 12 40 40 H 1.09003 * 109.74829 * 346.85635 * 18 10 8 41 41 H 1.09000 * 109.75086 * 107.53379 * 18 10 8 42 42 H 0.97002 * 119.99324 * 179.97438 * 23 22 20 43 43 H 1.09003 * 110.48948 * 120.63625 * 28 6 5 44 44 H 1.09007 * 110.48723 * 243.14598 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0831 -0.8022 -1.2053 5 8 3.3955 -1.2176 -0.7634 6 6 3.2718 -1.5881 0.6199 7 1 3.0838 -2.6587 0.7015 8 6 4.5350 -1.2321 1.3607 9 8 5.4213 -0.6293 0.7932 10 7 4.6798 -1.5835 2.6538 11 6 3.6640 -2.4088 3.3266 12 6 4.3900 -3.5348 4.0834 13 1 3.6935 -4.2093 4.5816 14 6 5.3095 -4.2769 3.0874 15 6 6.6541 -3.5116 3.1471 16 6 6.4175 -2.3803 4.1730 17 1 7.3136 -2.1361 4.7435 18 6 5.8568 -1.1496 3.4233 19 7 5.3251 -2.8904 5.0372 20 6 5.2049 -2.7854 6.3972 21 1 6.0611 -2.5105 6.9954 22 6 3.9826 -3.0321 7.0071 23 7 2.8989 -3.1773 6.2743 24 14 3.8757 -3.1580 8.8678 25 1 4.0857 -4.5687 9.2813 26 1 4.9209 -2.3011 9.4828 27 1 2.5354 -2.7043 9.3184 28 6 2.0825 -0.8013 1.2038 29 1 -0.3633 0.4561 0.9209 30 1 -0.3633 0.5694 -0.8555 31 1 -0.3633 -1.0256 -0.0653 32 1 1.4562 -1.6704 -1.4088 33 1 2.1582 -0.1665 -2.0876 34 1 2.9890 -2.8382 2.5863 35 1 3.0991 -1.7968 4.0298 36 1 5.4457 -5.3132 3.3967 37 1 4.8931 -4.2323 2.0810 38 1 6.8946 -3.0928 2.1699 39 1 7.4552 -4.1690 3.4849 40 1 6.6150 -0.7562 2.7461 41 1 5.5663 -0.3797 4.1380 42 1 2.0449 -3.3500 6.7005 43 1 1.3247 -1.4843 1.5877 44 1 2.4206 -0.1269 1.9907 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029397546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:57 Heat of formation + Delta-G solvation = -60.543603 kcal Electronic energy + Delta-G solvation = -25696.677743 eV Core-core repulsion = 22228.159025 eV Total energy + Delta-G solvation = -3468.518718 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.87002 -40.40980 -38.87091 -35.49654 -34.55540 -34.24554 -32.47892 -31.14081 -30.91168 -27.85312 -27.17731 -25.76887 -25.41542 -24.18285 -21.68077 -21.33442 -21.18304 -20.28921 -18.91602 -17.68756 -17.49297 -17.26239 -16.66964 -16.57371 -15.90990 -15.68644 -15.55122 -15.01157 -14.80314 -14.66364 -14.43888 -14.27331 -13.76339 -13.54838 -13.37054 -13.27082 -13.08701 -12.87981 -12.77915 -12.62155 -12.56147 -12.28084 -11.99034 -11.82769 -11.75408 -11.69991 -11.49278 -11.44374 -11.16592 -11.08171 -10.76116 -10.37129 -9.74264 -8.69412 -7.84325 -5.18192 1.50672 1.52982 1.56722 1.59412 1.89631 2.52382 2.95153 3.33749 3.35932 3.48122 3.60483 3.75024 3.86032 4.09017 4.09383 4.19863 4.21180 4.26186 4.33591 4.43743 4.52260 4.54137 4.66541 4.69870 4.74646 4.79054 4.80582 4.87913 4.97345 5.02659 5.05613 5.08311 5.14169 5.20820 5.29813 5.33783 5.36931 5.55569 5.60657 5.76763 5.85296 6.24222 6.52873 7.09970 7.17124 7.73085 8.53038 9.27533 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019109 B = 0.005219 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.953241 B = 5363.500276 C = 6262.156266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.121 4.121 3 H 0.075 0.925 4 C 0.044 3.956 5 O -0.380 6.380 6 C 0.067 3.933 7 H 0.108 0.892 8 C 0.505 3.495 9 O -0.583 6.583 10 N -0.588 5.588 11 C 0.121 3.879 12 C 0.162 3.838 13 H 0.091 0.909 14 C -0.127 4.127 15 C -0.114 4.114 16 C 0.131 3.869 17 H 0.083 0.917 18 C 0.107 3.893 19 N -0.603 5.603 20 C -0.236 4.236 21 H 0.073 0.927 22 C -0.046 4.046 23 N -0.930 5.930 24 Si 0.968 3.032 25 H -0.290 1.290 26 H -0.278 1.278 27 H -0.296 1.296 28 C -0.136 4.136 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.046 0.954 42 H 0.250 0.750 43 H 0.107 0.893 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.097 1.427 -11.439 12.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.140 4.140 3 H 0.093 0.907 4 C -0.032 4.032 5 O -0.299 6.299 6 C 0.006 3.994 7 H 0.125 0.875 8 C 0.294 3.706 9 O -0.463 6.463 10 N -0.320 5.320 11 C -0.003 4.003 12 C 0.054 3.946 13 H 0.109 0.891 14 C -0.166 4.166 15 C -0.152 4.152 16 C 0.023 3.977 17 H 0.101 0.899 18 C -0.018 4.018 19 N -0.324 5.324 20 C -0.365 4.365 21 H 0.091 0.909 22 C -0.241 4.241 23 N -0.578 5.578 24 Si 0.798 3.202 25 H -0.217 1.217 26 H -0.203 1.203 27 H -0.223 1.223 28 C -0.175 4.175 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.126 0.874 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.125 0.875 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.601 1.719 -11.622 12.617 hybrid contribution -0.125 0.168 1.460 1.475 sum -4.726 1.887 -10.161 11.364 Atomic orbital electron populations 1.21692 0.91392 1.03261 1.02911 1.22711 0.98364 0.99407 0.93495 0.90670 1.24011 0.82746 0.98767 0.97660 1.88994 1.31686 1.86581 1.22654 1.22624 0.92596 1.01003 0.83199 0.87469 1.20983 0.88896 0.78958 0.81786 1.90612 1.43970 1.43815 1.67936 1.48139 1.23175 1.50966 1.09727 1.22378 0.89368 0.93226 0.95339 1.21831 0.92095 0.92589 0.88039 0.89076 1.22641 0.96202 0.98932 0.98827 1.22447 0.97651 0.97169 0.97982 1.22276 0.92197 0.92113 0.91081 0.89869 1.22351 0.87828 0.97645 0.93977 1.45352 1.22128 1.63214 1.01747 1.19246 0.94675 1.41164 0.81403 0.90911 1.25400 0.94902 1.02680 1.01132 1.69954 0.98172 1.55159 1.34475 0.85249 0.76404 0.77396 0.81182 1.21728 1.20292 1.22284 1.23005 0.96068 0.99556 0.98822 0.92144 0.90731 0.91116 0.89595 0.87447 0.89563 0.92669 0.92061 0.91664 0.92308 0.91344 0.90508 0.93567 0.94065 0.87492 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.19 71.98 0.66 -1.27 16 2 C -0.12 -2.45 3.73 -9.50 -0.04 -2.49 16 3 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 4 C 0.04 0.90 7.18 72.66 0.52 1.42 16 5 O -0.38 -11.85 10.76 -130.30 -1.40 -13.25 16 6 C 0.07 1.99 2.94 30.22 0.09 2.08 16 7 H 0.11 2.83 7.07 -2.38 -0.02 2.81 16 8 C 0.51 19.12 6.84 87.66 0.60 19.72 16 9 O -0.58 -26.18 15.99 15.63 0.25 -25.93 16 10 N -0.59 -22.29 2.28 -813.53 -1.86 -24.15 16 11 C 0.12 4.60 5.06 86.55 0.44 5.04 16 12 C 0.16 6.83 3.09 45.47 0.14 6.97 16 13 H 0.09 4.39 6.38 -2.38 -0.02 4.37 16 14 C -0.13 -4.53 6.23 31.74 0.20 -4.33 16 15 C -0.11 -4.00 6.24 31.74 0.20 -3.80 16 16 C 0.13 5.20 4.32 45.72 0.20 5.40 16 17 H 0.08 3.17 8.14 -2.38 -0.02 3.15 16 18 C 0.11 4.23 5.98 86.81 0.52 4.75 16 19 N -0.60 -28.01 2.79 -635.28 -1.77 -29.79 16 20 C -0.24 -12.16 10.37 84.04 0.87 -11.29 16 21 H 0.07 3.70 7.85 -2.91 -0.02 3.68 16 22 C -0.05 -2.38 5.41 84.86 0.46 -1.93 16 23 N -0.93 -48.95 10.35 21.65 0.22 -48.72 16 24 Si 0.97 42.84 29.57 68.60 2.03 44.86 16 25 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 26 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 27 H -0.30 -13.25 7.11 99.48 0.71 -12.54 16 28 C -0.14 -3.41 5.05 31.58 0.16 -3.25 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 32 H 0.09 1.37 8.01 -2.38 -0.02 1.36 16 33 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.09 2.75 5.60 -2.39 -0.01 2.73 16 35 H 0.05 2.47 7.75 -2.39 -0.02 2.45 16 36 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.06 2.11 7.86 -2.38 -0.02 2.09 16 38 H 0.06 2.05 7.87 -2.39 -0.02 2.03 16 39 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 40 H 0.08 3.00 7.08 -2.39 -0.02 2.98 16 41 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.25 12.92 8.31 -92.71 -0.77 12.15 16 43 H 0.11 2.26 7.83 -2.39 -0.02 2.24 16 44 H 0.06 1.80 7.69 -2.38 -0.02 1.79 16 Total: -1.00 -63.22 337.21 3.46 -59.76 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.98 Total: 20.19 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 5.02 Total: 17.02 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -3.41 Total: -102.65 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -1.15 Total: -39.18 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -63.22 3.46 -59.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029397546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.784 kcal (2) G-P(sol) polarization free energy of solvation -63.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds