Wall clock time and date at job start Tue Mar 31 2020 03:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.50252 * 2 1 4 4 C 1.53626 * 109.45541 * 120.20903 * 2 1 3 5 5 N 1.46927 * 108.53999 * 174.73956 * 4 2 1 6 6 C 1.34782 * 120.63253 * 126.36993 * 5 4 2 7 7 O 1.21614 * 119.99482 * 354.56745 * 6 5 4 8 8 C 1.47096 * 120.00119 * 174.56694 * 6 5 4 9 9 C 1.32088 * 118.87923 * 81.27199 * 8 6 5 10 10 C 1.50262 * 122.58445 * 180.37000 * 9 8 6 11 11 O 1.42899 * 110.08908 * 344.34998 * 10 9 8 12 12 C 1.43273 * 113.09766 * 50.53209 * 11 10 9 13 13 C 1.50417 * 118.87887 * 260.99987 * 8 6 5 14 14 C 1.46926 * 118.74128 * 306.08876 * 5 4 2 15 15 C 1.53196 * 108.77235 * 53.86274 * 14 5 4 16 16 C 1.53039 * 109.31179 * 305.36587 * 15 14 5 17 17 H 1.09004 * 109.46091 * 181.38384 * 16 15 14 18 18 N 1.46502 * 109.46097 * 301.34225 * 16 15 14 19 19 C 1.36927 * 120.00116 * 275.00049 * 18 16 15 20 20 H 1.08006 * 120.00270 * 359.97438 * 19 18 16 21 21 C 1.38817 * 120.00364 * 179.97438 * 19 18 16 22 22 N 1.31610 * 120.00595 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99523 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47129 * 89.99794 * 23 21 19 25 25 H 1.48503 * 109.46898 * 209.99933 * 23 21 19 26 26 H 1.48503 * 109.46909 * 329.99904 * 23 21 19 27 27 H 1.08998 * 109.47358 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46810 * 300.06757 * 1 2 3 29 29 H 1.08998 * 109.46789 * 60.06251 * 1 2 3 30 30 H 1.09002 * 109.74149 * 55.00491 * 4 2 1 31 31 H 1.08996 * 109.66359 * 294.42944 * 4 2 1 32 32 H 1.08010 * 118.70788 * 0.39324 * 9 8 6 33 33 H 1.08994 * 109.36881 * 104.54344 * 10 9 8 34 34 H 1.09001 * 109.37277 * 224.29446 * 10 9 8 35 35 H 1.09000 * 109.64272 * 50.85258 * 12 11 10 36 36 H 1.09000 * 109.63954 * 171.26481 * 12 11 10 37 37 H 1.08993 * 109.45635 * 283.38255 * 13 8 6 38 38 H 1.09004 * 109.44700 * 43.31447 * 13 8 6 39 39 H 1.08996 * 109.58981 * 173.64942 * 14 5 4 40 40 H 1.08999 * 109.58750 * 294.08118 * 14 5 4 41 41 H 1.08997 * 109.49848 * 65.31611 * 15 14 5 42 42 H 1.08998 * 109.49885 * 185.41399 * 15 14 5 43 43 H 0.96999 * 119.99526 * 95.00420 * 18 16 15 44 44 H 0.96996 * 120.00581 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0417 -0.7288 1.2518 5 7 3.5053 -0.8284 1.1690 6 6 4.2819 -0.3855 2.1775 7 8 3.7799 0.1911 3.1234 8 6 5.7366 -0.5994 2.1342 9 6 6.4818 0.2257 1.4211 10 6 7.9734 0.0799 1.3122 11 8 8.4571 -0.7934 2.3346 12 6 7.7425 -2.0335 2.3991 13 6 6.3255 -1.7467 2.9085 14 6 4.1059 -1.4256 -0.0315 15 6 3.5708 -0.6941 -1.2666 16 6 2.0408 -0.7228 -1.2485 17 1 1.6577 -0.2243 -2.1389 18 7 1.5789 -2.1130 -1.2310 19 6 1.4474 -2.8056 -2.4048 20 1 1.6837 -2.3269 -3.3437 21 6 1.0102 -4.1231 -2.3883 22 7 0.8843 -4.7890 -3.5165 23 14 0.6007 -4.9508 -0.7644 24 1 -0.8328 -4.7318 -0.4449 25 1 0.8673 -6.4078 -0.8705 26 1 1.4423 -4.3707 0.3129 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5149 0.8894 29 1 -0.3633 0.5129 -0.8905 30 1 1.6095 -1.7285 1.2983 31 1 1.7636 -0.1664 2.1431 32 1 6.0002 1.0374 0.8960 33 1 8.2258 -0.3324 0.3353 34 1 8.4414 1.0579 1.4236 35 1 7.6955 -2.4814 1.4065 36 1 8.2494 -2.7132 3.0841 37 1 6.3615 -1.4898 3.9671 38 1 5.7061 -2.6331 2.7712 39 1 5.1902 -1.3231 0.0127 40 1 3.8386 -2.4809 -0.0876 41 1 3.9154 0.3399 -1.2547 42 1 3.9334 -1.1885 -2.1678 43 1 1.3663 -2.5428 -0.3878 44 1 0.5792 -5.7096 -3.5048 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036012089.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:43 Heat of formation + Delta-G solvation = -50.601975 kcal Electronic energy + Delta-G solvation = -25101.893710 eV Core-core repulsion = 21633.806094 eV Total energy + Delta-G solvation = -3468.087616 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.57078 -39.17942 -37.79574 -34.57850 -33.89883 -32.73859 -31.57073 -31.37215 -29.81304 -27.22491 -25.94131 -24.76785 -24.09276 -23.20599 -21.74783 -20.83109 -18.83189 -18.06131 -17.88234 -17.27099 -16.63350 -16.28394 -15.39615 -15.18173 -14.99434 -14.67598 -14.42688 -13.90697 -13.84535 -13.64316 -13.43941 -13.07146 -12.90389 -12.77751 -12.64585 -12.38093 -11.80433 -11.75479 -11.63753 -11.47045 -11.13488 -11.05003 -10.99496 -10.65627 -10.59767 -10.31735 -10.26761 -9.91344 -9.61624 -9.55394 -9.18322 -8.99652 -8.43080 -7.34180 -5.84189 -3.19623 1.55557 2.58118 3.11735 3.28630 3.32191 3.39082 3.60477 4.36495 4.50285 4.51115 4.67789 4.91817 4.97673 5.04049 5.07768 5.13948 5.17569 5.24316 5.30039 5.39716 5.43292 5.46920 5.55009 5.58336 5.68781 5.71882 5.82839 5.87308 6.01274 6.03068 6.16691 6.23305 6.32171 6.33138 6.42293 6.50623 6.60841 6.69708 6.80765 6.82490 7.50328 7.91945 8.17223 8.34846 9.12881 9.85530 10.05413 11.34205 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017085 B = 0.004958 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.437130 B = 5646.217662 C = 6204.582378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 H 0.071 0.929 4 C 0.116 3.884 5 N -0.597 5.597 6 C 0.552 3.448 7 O -0.546 6.546 8 C -0.132 4.132 9 C -0.161 4.161 10 C 0.091 3.909 11 O -0.378 6.378 12 C 0.060 3.940 13 C -0.109 4.109 14 C 0.112 3.888 15 C -0.149 4.149 16 C 0.184 3.816 17 H 0.061 0.939 18 N -0.743 5.743 19 C -0.241 4.241 20 H 0.091 0.909 21 C 0.008 3.992 22 N -0.932 5.932 23 Si 0.878 3.122 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.279 1.279 27 H 0.064 0.936 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.123 0.877 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.060 0.940 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.080 0.920 43 H 0.360 0.640 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.443 8.800 9.462 17.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 H 0.090 0.910 4 C -0.006 4.006 5 N -0.329 5.329 6 C 0.339 3.661 7 O -0.425 6.425 8 C -0.135 4.135 9 C -0.180 4.180 10 C 0.015 3.985 11 O -0.297 6.297 12 C -0.016 4.016 13 C -0.147 4.147 14 C -0.010 4.010 15 C -0.189 4.189 16 C 0.074 3.926 17 H 0.079 0.921 18 N -0.387 5.387 19 C -0.371 4.371 20 H 0.108 0.892 21 C -0.188 4.188 22 N -0.580 5.580 23 Si 0.708 3.292 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.206 1.206 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.140 0.860 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.079 0.921 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.194 0.806 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.295 9.056 9.821 17.494 hybrid contribution -0.684 -0.841 0.779 1.335 sum 10.611 8.215 10.601 17.101 Atomic orbital electron populations 1.21677 0.94141 1.02798 1.01001 1.21832 0.96569 0.99240 0.95461 0.91020 1.21775 0.78615 1.01068 0.99145 1.48186 1.06973 1.59533 1.18186 1.18557 0.86883 0.78349 0.82271 1.90781 1.75077 1.42235 1.34403 1.20821 0.93087 0.99277 1.00325 1.23338 0.96886 0.99047 0.98725 1.21484 0.90083 0.95239 0.91681 1.88122 1.57557 1.28335 1.55666 1.22707 0.91107 0.86292 1.01513 1.21001 0.96920 0.96327 1.00428 1.21766 0.97064 0.98596 0.83609 1.22493 1.00027 0.98910 0.97516 1.20191 0.90927 0.86201 0.95246 0.92103 1.42837 1.80699 1.09347 1.05816 1.19051 1.37643 0.94176 0.86256 0.89152 1.24628 1.01516 0.96692 0.95973 1.69680 1.53053 1.10862 1.24423 0.86677 0.78523 0.79312 0.84665 1.21012 1.21729 1.20579 0.91693 0.93481 0.92248 0.91364 0.89428 0.85959 0.91006 0.87496 0.92141 0.88018 0.89124 0.89529 0.90767 0.90248 0.93002 0.90143 0.80616 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.05 37.16 0.34 -1.70 16 2 C -0.11 -1.69 2.68 -90.27 -0.24 -1.93 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 4 C 0.12 1.85 5.45 -3.48 -0.02 1.83 16 5 N -0.60 -9.20 2.97 -173.89 -0.52 -9.72 16 6 C 0.55 8.70 6.94 -12.66 -0.09 8.61 16 7 O -0.55 -10.38 16.52 5.27 0.09 -10.30 16 8 C -0.13 -1.69 4.11 -103.09 -0.42 -2.11 16 9 C -0.16 -1.75 8.65 -36.44 -0.32 -2.06 16 10 C 0.09 0.82 7.04 35.79 0.25 1.07 16 11 O -0.38 -4.07 10.83 -35.23 -0.38 -4.45 16 12 C 0.06 0.56 6.89 37.30 0.26 0.81 16 13 C -0.11 -1.19 6.09 -27.87 -0.17 -1.36 16 14 C 0.11 1.66 6.03 -3.71 -0.02 1.64 16 15 C -0.15 -2.28 5.78 -26.61 -0.15 -2.44 16 16 C 0.18 3.21 2.53 -67.89 -0.17 3.04 16 17 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 18 N -0.74 -15.83 3.44 -53.38 -0.18 -16.02 16 19 C -0.24 -6.28 10.41 -15.06 -0.16 -6.44 16 20 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 21 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 22 N -0.93 -28.13 13.97 55.49 0.78 -27.36 16 23 Si 0.88 21.22 27.74 -169.99 -4.71 16.51 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 27 H 0.06 1.08 7.54 -51.93 -0.39 0.69 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.16 6.63 -51.93 -0.34 0.81 16 31 H 0.09 1.40 6.99 -51.93 -0.36 1.04 16 32 H 0.12 1.28 7.99 -52.48 -0.42 0.86 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.94 5.67 -51.93 -0.29 0.65 16 40 H 0.08 1.36 7.74 -51.93 -0.40 0.96 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.36 7.74 3.78 -40.82 -0.15 7.58 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 343.66 15.07 5.18 5.18 Total: -1.00 -31.61 343.66 -7.80 -39.41 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -7.03 Total: 7.67 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -1.01 Total: -0.93 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 0.08 Total: -53.09 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.29 Total: -14.74 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.71 Total: 16.51 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.61 -7.80 -39.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036012089.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.192 kcal (2) G-P(sol) polarization free energy of solvation -31.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds