Wall clock time and date at job start Tue Mar 31 2020 03:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34770 * 120.00001 * 2 1 4 4 O 1.21279 * 120.00282 * 5.22033 * 3 2 1 5 5 C 1.50703 * 119.99890 * 185.21701 * 3 2 1 6 6 C 1.54031 * 111.85683 * 297.85693 * 5 3 2 7 7 C 1.57186 * 103.35008 * 214.39737 * 6 5 3 8 8 C 1.54865 * 102.91239 * 37.60505 * 7 6 5 9 9 C 1.54343 * 104.12782 * 321.15128 * 8 7 6 10 10 H 1.09006 * 111.93690 * 147.01617 * 9 8 7 11 11 O 1.43813 * 108.58376 * 270.39112 * 9 8 7 12 12 C 1.44313 * 107.19522 * 140.23886 * 11 9 8 13 13 C 1.54622 * 111.90393 * 60.60254 * 5 3 2 14 14 C 1.46504 * 119.99635 * 179.97438 * 2 1 3 15 15 C 1.53489 * 114.20953 * 300.00296 * 14 2 1 16 16 N 1.47073 * 87.98645 * 87.51907 * 15 14 2 17 17 C 1.36933 * 136.05892 * 207.08506 * 16 15 14 18 18 H 1.07995 * 120.00132 * 359.72563 * 17 16 15 19 19 C 1.38816 * 119.99735 * 180.02562 * 17 16 15 20 20 N 1.31611 * 120.00129 * 359.71891 * 19 17 16 21 21 Si 1.86801 * 119.99761 * 179.72387 * 19 17 16 22 22 H 1.48505 * 109.47204 * 59.99611 * 21 19 17 23 23 H 1.48499 * 109.47047 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47004 * 300.00027 * 21 19 17 25 25 C 1.47073 * 87.88338 * 27.34137 * 16 15 14 26 26 H 1.08993 * 109.47287 * 264.86799 * 1 2 3 27 27 H 1.09005 * 109.46799 * 24.86386 * 1 2 3 28 28 H 1.08997 * 109.47089 * 144.86018 * 1 2 3 29 29 H 1.09005 * 110.43290 * 333.81572 * 6 5 3 30 30 H 1.08995 * 110.43372 * 96.31414 * 6 5 3 31 31 H 1.08996 * 110.79197 * 279.17671 * 7 6 5 32 32 H 1.09004 * 110.72082 * 155.99425 * 7 6 5 33 33 H 1.09004 * 110.50054 * 202.49008 * 8 7 6 34 34 H 1.09000 * 110.50349 * 79.80825 * 8 7 6 35 35 H 1.08997 * 110.62184 * 201.50811 * 12 11 9 36 36 H 1.08994 * 110.75081 * 78.57001 * 12 11 9 37 37 H 1.09003 * 110.90737 * 217.89363 * 13 5 3 38 38 H 1.09000 * 110.90924 * 341.46521 * 13 5 3 39 39 H 1.08995 * 113.40682 * 166.80190 * 14 2 1 40 40 H 1.08998 * 113.46672 * 332.74368 * 15 14 2 41 41 H 1.09001 * 113.47021 * 202.29955 * 15 14 2 42 42 H 0.96997 * 119.99886 * 180.02562 * 20 19 17 43 43 H 1.09000 * 113.46462 * 87.43424 * 25 16 15 44 44 H 1.08995 * 113.46623 * 217.87948 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5364 2.2153 0.0956 5 6 3.6413 1.1698 -0.1187 6 6 4.3112 0.4461 1.0645 7 6 5.6376 1.2605 1.2841 8 6 5.1955 2.7204 1.0168 9 6 4.2156 2.6060 -0.1702 10 1 3.4241 3.3537 -0.1185 11 8 4.9630 2.7173 -1.3939 12 6 4.4037 1.7655 -2.3234 13 6 4.1166 0.5242 -1.4408 14 6 2.1975 -1.2688 0.0006 15 6 1.9059 -2.1634 1.2133 16 7 0.7741 -2.7256 0.4610 17 6 -0.4282 -3.3019 0.7731 18 1 -0.7152 -3.4265 1.8067 19 6 -1.2753 -3.7318 -0.2392 20 7 -0.9253 -3.5803 -1.4989 21 14 -2.9120 -4.5251 0.1866 22 1 -3.7389 -3.5674 0.9640 23 1 -3.6243 -4.8920 -1.0637 24 1 -2.6742 -5.7458 0.9979 25 6 1.5048 -2.4023 -0.7737 26 1 -0.3633 -0.0919 1.0235 27 1 -0.3633 0.9325 -0.4321 28 1 -0.3633 -0.8404 -0.5915 29 1 3.6694 0.4813 1.9449 30 1 4.5388 -0.5864 0.7994 31 1 6.4033 0.9522 0.5724 32 1 5.9952 1.1465 2.3075 33 1 6.0536 3.3355 0.7454 34 1 4.6903 3.1324 1.8903 35 1 5.1243 1.5228 -3.1043 36 1 3.4810 2.1481 -2.7595 37 1 5.0234 -0.0601 -1.2844 38 1 3.3302 -0.0911 -1.8780 39 1 3.2574 -1.1570 -0.2279 40 1 1.6038 -1.6069 2.1005 41 1 2.6941 -2.8880 1.4177 42 1 -1.5174 -3.8803 -2.2061 43 1 2.1872 -3.1899 -1.0931 44 1 0.8609 -2.0493 -1.5793 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043320205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:55 Heat of formation + Delta-G solvation = -7.257580 kcal Electronic energy + Delta-G solvation = -25817.030877 eV Core-core repulsion = 22350.822814 eV Total energy + Delta-G solvation = -3466.208062 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.19817 -39.04276 -37.68082 -35.24884 -33.91007 -32.08069 -32.00381 -28.20887 -27.93331 -27.50572 -25.93882 -24.73560 -23.59880 -22.49933 -21.22660 -20.84258 -19.83066 -18.35607 -17.00872 -16.51524 -16.10604 -15.62824 -15.49722 -15.06502 -14.85331 -14.62989 -14.47476 -14.04250 -13.83664 -13.12306 -12.90507 -12.71826 -12.70162 -12.29783 -11.97343 -11.70027 -11.54895 -11.26869 -11.20258 -11.16844 -11.07389 -10.98653 -10.92981 -10.84056 -10.67010 -10.58299 -10.17219 -9.98632 -9.64486 -9.53999 -9.31530 -8.91111 -8.01907 -7.00654 -5.87930 -3.20677 2.85634 3.33358 3.37624 3.39091 3.39577 3.79127 4.30333 4.36560 4.45819 4.63313 4.86852 4.96014 5.04154 5.07177 5.10586 5.25098 5.29929 5.35556 5.40605 5.53938 5.60158 5.68089 5.79356 5.84545 5.86397 5.89015 5.91381 6.00999 6.04258 6.11363 6.18875 6.23617 6.31276 6.41675 6.48332 6.74730 6.91980 6.97341 7.02098 7.09025 7.40351 7.84380 7.96852 8.50446 8.92841 9.59234 10.50164 11.28913 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029448 B = 0.004440 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.609101 B = 6305.436499 C = 6409.517857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.568 5.568 3 C 0.527 3.473 4 O -0.552 6.552 5 C -0.112 4.112 6 C -0.108 4.108 7 C -0.120 4.120 8 C -0.124 4.124 9 C 0.090 3.910 10 H 0.096 0.904 11 O -0.374 6.374 12 C 0.048 3.952 13 C -0.146 4.146 14 C 0.064 3.936 15 C 0.104 3.896 16 N -0.603 5.603 17 C -0.217 4.217 18 H 0.080 0.920 19 C -0.004 4.004 20 N -0.920 5.920 21 Si 0.911 3.089 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.286 1.286 25 C 0.143 3.857 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.043 0.957 41 H 0.042 0.958 42 H 0.255 0.745 43 H 0.037 0.963 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.156 8.020 1.520 15.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.298 5.298 3 C 0.314 3.686 4 O -0.431 6.431 5 C -0.116 4.116 6 C -0.146 4.146 7 C -0.158 4.158 8 C -0.161 4.161 9 C 0.032 3.968 10 H 0.114 0.886 11 O -0.293 6.293 12 C -0.029 4.029 13 C -0.184 4.184 14 C -0.041 4.041 15 C -0.023 4.023 16 N -0.329 5.329 17 C -0.344 4.344 18 H 0.098 0.902 19 C -0.201 4.201 20 N -0.567 5.567 21 Si 0.741 3.259 22 H -0.210 1.210 23 H -0.215 1.215 24 H -0.212 1.212 25 C 0.017 3.983 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.122 0.878 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.626 8.533 1.455 15.308 hybrid contribution -1.144 -1.028 0.236 1.556 sum 11.481 7.505 1.691 13.821 Atomic orbital electron populations 1.21718 0.77677 1.02936 1.02587 1.47295 1.07546 1.04523 1.70405 1.20004 0.88589 0.83524 0.76468 1.90637 1.69916 1.31307 1.51207 1.22532 0.93061 0.97781 0.98217 1.22929 0.96136 0.98923 0.96585 1.22877 0.96847 0.94510 1.01559 1.22503 0.99204 0.97521 0.96879 1.23373 0.93512 0.94786 0.85161 0.88595 1.88830 1.56818 1.60292 1.23364 1.23511 0.98916 0.87709 0.92728 1.23385 1.02696 0.98589 0.93708 1.23168 0.95267 0.84528 1.01178 1.22846 0.91174 0.93411 0.94903 1.45621 1.13925 1.71418 1.01975 1.18845 0.90454 1.32622 0.92520 0.90240 1.24742 0.98794 1.01342 0.95181 1.69777 1.37197 1.51709 0.98005 0.86223 0.83383 0.79307 0.77003 1.21003 1.21531 1.21217 1.22528 0.92509 0.90583 0.92688 0.93219 0.92539 0.87791 0.90686 0.89932 0.90971 0.91167 0.90371 0.90505 0.88821 0.92153 0.89269 0.89032 0.88172 0.93920 0.94015 0.93458 0.94541 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.87 9.45 59.85 0.57 2.43 16 2 N -0.57 -10.23 3.07 -173.55 -0.53 -10.77 16 3 C 0.53 9.11 6.47 -10.99 -0.07 9.04 16 4 O -0.55 -11.18 15.03 5.56 0.08 -11.10 16 5 C -0.11 -1.51 0.49 -153.34 -0.08 -1.59 16 6 C -0.11 -1.24 4.65 -23.92 -0.11 -1.35 16 7 C -0.12 -1.18 6.94 -23.47 -0.16 -1.34 16 8 C -0.12 -1.36 6.50 -25.04 -0.16 -1.52 16 9 C 0.09 1.22 3.88 -25.10 -0.10 1.12 16 10 H 0.10 1.51 6.74 -51.93 -0.35 1.16 16 11 O -0.37 -5.11 11.08 -35.23 -0.39 -5.50 16 12 C 0.05 0.57 7.72 38.21 0.29 0.87 16 13 C -0.15 -1.73 4.71 -24.83 -0.12 -1.85 16 14 C 0.06 1.08 2.82 -67.68 -0.19 0.89 16 15 C 0.10 1.94 8.31 -8.50 -0.07 1.87 16 16 N -0.60 -14.00 2.51 -184.59 -0.46 -14.46 16 17 C -0.22 -5.65 10.54 -15.06 -0.16 -5.81 16 18 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 19 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 20 N -0.92 -25.42 11.50 55.49 0.64 -24.78 16 21 Si 0.91 21.22 29.55 -169.99 -5.02 16.19 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.14 3.01 6.45 -8.36 -0.05 2.95 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 1.11 7.35 -51.93 -0.38 0.73 16 28 H 0.10 2.39 5.74 -51.93 -0.30 2.10 16 29 H 0.07 0.93 7.93 -51.93 -0.41 0.52 16 30 H 0.08 0.86 6.12 -51.93 -0.32 0.55 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.89 7.62 -51.93 -0.40 0.49 16 38 H 0.09 1.17 6.58 -51.93 -0.34 0.83 16 39 H 0.10 1.39 3.34 -51.93 -0.17 1.21 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.08 1.88 6.16 -51.93 -0.32 1.56 16 LS Contribution 333.59 15.07 5.03 5.03 Total: -1.00 -29.72 333.59 -7.93 -37.65 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.76 Total: 2.22 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -0.51 Total: 5.51 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: -0.36 Total: -50.01 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.31 Total: -16.60 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.72 -7.93 -37.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043320205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.397 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds