Wall clock time and date at job start Tue Mar 31 2020 03:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34770 * 120.00001 * 2 1 4 4 O 1.21279 * 120.00282 * 5.22033 * 3 2 1 5 5 C 1.50703 * 119.99890 * 185.21701 * 3 2 1 6 6 C 1.54031 * 111.85683 * 297.85693 * 5 3 2 7 7 C 1.57186 * 103.35008 * 214.39737 * 6 5 3 8 8 C 1.54865 * 102.91239 * 37.60505 * 7 6 5 9 9 C 1.54343 * 104.12782 * 321.15128 * 8 7 6 10 10 H 1.09006 * 111.93690 * 147.01617 * 9 8 7 11 11 O 1.43813 * 108.58376 * 270.39112 * 9 8 7 12 12 C 1.44313 * 107.19522 * 140.23886 * 11 9 8 13 13 C 1.54622 * 111.90393 * 60.60254 * 5 3 2 14 14 C 1.46504 * 119.99635 * 179.97438 * 2 1 3 15 15 C 1.53489 * 114.20953 * 300.00296 * 14 2 1 16 16 N 1.47073 * 87.98645 * 87.51907 * 15 14 2 17 17 C 1.36933 * 136.05892 * 207.08506 * 16 15 14 18 18 H 1.07995 * 120.00132 * 359.72563 * 17 16 15 19 19 C 1.38816 * 119.99735 * 180.02562 * 17 16 15 20 20 N 1.31611 * 120.00129 * 359.71891 * 19 17 16 21 21 Si 1.86801 * 119.99761 * 179.72387 * 19 17 16 22 22 H 1.48505 * 109.47204 * 59.99611 * 21 19 17 23 23 H 1.48499 * 109.47047 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47004 * 300.00027 * 21 19 17 25 25 C 1.47073 * 87.88338 * 27.34137 * 16 15 14 26 26 H 1.08993 * 109.47287 * 264.86799 * 1 2 3 27 27 H 1.09005 * 109.46799 * 24.86386 * 1 2 3 28 28 H 1.08997 * 109.47089 * 144.86018 * 1 2 3 29 29 H 1.09005 * 110.43290 * 333.81572 * 6 5 3 30 30 H 1.08995 * 110.43372 * 96.31414 * 6 5 3 31 31 H 1.08996 * 110.79197 * 279.17671 * 7 6 5 32 32 H 1.09004 * 110.72082 * 155.99425 * 7 6 5 33 33 H 1.09004 * 110.50054 * 202.49008 * 8 7 6 34 34 H 1.09000 * 110.50349 * 79.80825 * 8 7 6 35 35 H 1.08997 * 110.62184 * 201.50811 * 12 11 9 36 36 H 1.08994 * 110.75081 * 78.57001 * 12 11 9 37 37 H 1.09003 * 110.90737 * 217.89363 * 13 5 3 38 38 H 1.09000 * 110.90924 * 341.46521 * 13 5 3 39 39 H 1.08995 * 113.40682 * 166.80190 * 14 2 1 40 40 H 1.08998 * 113.46672 * 332.74368 * 15 14 2 41 41 H 1.09001 * 113.47021 * 202.29955 * 15 14 2 42 42 H 0.96997 * 119.99886 * 180.02562 * 20 19 17 43 43 H 1.09000 * 113.46462 * 87.43424 * 25 16 15 44 44 H 1.08995 * 113.46623 * 217.87948 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5364 2.2153 0.0956 5 6 3.6413 1.1698 -0.1187 6 6 4.3112 0.4461 1.0645 7 6 5.6376 1.2605 1.2841 8 6 5.1955 2.7204 1.0168 9 6 4.2156 2.6060 -0.1702 10 1 3.4241 3.3537 -0.1185 11 8 4.9630 2.7173 -1.3939 12 6 4.4037 1.7655 -2.3234 13 6 4.1166 0.5242 -1.4408 14 6 2.1975 -1.2688 0.0006 15 6 1.9059 -2.1634 1.2133 16 7 0.7741 -2.7256 0.4610 17 6 -0.4282 -3.3019 0.7731 18 1 -0.7152 -3.4265 1.8067 19 6 -1.2753 -3.7318 -0.2392 20 7 -0.9253 -3.5803 -1.4989 21 14 -2.9120 -4.5251 0.1866 22 1 -3.7389 -3.5674 0.9640 23 1 -3.6243 -4.8920 -1.0637 24 1 -2.6742 -5.7458 0.9979 25 6 1.5048 -2.4023 -0.7737 26 1 -0.3633 -0.0919 1.0235 27 1 -0.3633 0.9325 -0.4321 28 1 -0.3633 -0.8404 -0.5915 29 1 3.6694 0.4813 1.9449 30 1 4.5388 -0.5864 0.7994 31 1 6.4033 0.9522 0.5724 32 1 5.9952 1.1465 2.3075 33 1 6.0536 3.3355 0.7454 34 1 4.6903 3.1324 1.8903 35 1 5.1243 1.5228 -3.1043 36 1 3.4810 2.1481 -2.7595 37 1 5.0234 -0.0601 -1.2844 38 1 3.3302 -0.0911 -1.8780 39 1 3.2574 -1.1570 -0.2279 40 1 1.6038 -1.6069 2.1005 41 1 2.6941 -2.8880 1.4177 42 1 -1.5174 -3.8803 -2.2061 43 1 2.1872 -3.1899 -1.0931 44 1 0.8609 -2.0493 -1.5793 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043320205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:54 Heat of formation + Delta-G solvation = -25.505821 kcal Electronic energy + Delta-G solvation = -25817.822180 eV Core-core repulsion = 22350.822814 eV Total energy + Delta-G solvation = -3466.999365 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.39716 -40.42830 -39.16987 -36.22619 -35.49233 -33.94311 -33.07206 -29.79801 -29.15808 -28.60397 -27.34474 -26.34251 -25.28231 -23.53391 -22.61701 -21.73607 -21.23239 -19.67900 -18.68370 -17.92156 -17.42960 -16.93492 -16.65342 -16.57679 -16.17451 -15.98482 -15.70137 -15.45537 -15.30136 -14.59150 -14.32286 -14.16729 -13.82200 -13.50717 -13.33696 -13.18390 -13.01481 -12.75585 -12.70048 -12.65945 -12.30228 -12.13328 -12.11256 -12.05753 -11.91799 -11.88756 -11.57560 -11.38974 -11.32173 -10.95752 -10.78926 -10.48840 -9.58529 -8.87842 -7.88407 -5.19509 1.47372 1.47381 1.48048 1.53929 1.94568 2.48171 2.79938 3.31417 3.32373 3.40005 3.46081 3.58509 3.72901 3.81078 4.05292 4.15698 4.22469 4.28310 4.37446 4.42588 4.46585 4.57228 4.68591 4.70800 4.74229 4.82092 4.84536 4.89630 4.92747 4.99365 4.99874 5.06837 5.08304 5.17253 5.21954 5.26013 5.32738 5.43095 5.47167 5.57901 5.92974 5.94317 6.50843 6.93953 7.06954 7.63101 8.61439 9.27837 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029448 B = 0.004440 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.609101 B = 6305.436499 C = 6409.517857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.573 5.573 3 C 0.525 3.475 4 O -0.586 6.586 5 C -0.110 4.110 6 C -0.109 4.109 7 C -0.109 4.109 8 C -0.121 4.121 9 C 0.085 3.915 10 H 0.064 0.936 11 O -0.381 6.381 12 C 0.044 3.956 13 C -0.143 4.143 14 C 0.094 3.906 15 C 0.106 3.894 16 N -0.631 5.631 17 C -0.218 4.218 18 H 0.078 0.922 19 C -0.055 4.055 20 N -0.946 5.946 21 Si 0.966 3.034 22 H -0.282 1.282 23 H -0.297 1.297 24 H -0.280 1.280 25 C 0.141 3.859 26 H 0.038 0.962 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.042 0.958 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.143 0.857 40 H 0.041 0.959 41 H 0.072 0.928 42 H 0.247 0.753 43 H 0.043 0.957 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.011 7.595 2.428 17.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.302 5.302 3 C 0.315 3.685 4 O -0.467 6.467 5 C -0.114 4.114 6 C -0.146 4.146 7 C -0.146 4.146 8 C -0.159 4.159 9 C 0.026 3.974 10 H 0.082 0.918 11 O -0.300 6.300 12 C -0.033 4.033 13 C -0.180 4.180 14 C -0.010 4.010 15 C -0.020 4.020 16 N -0.358 5.358 17 C -0.346 4.346 18 H 0.096 0.904 19 C -0.249 4.249 20 N -0.595 5.595 21 Si 0.795 3.205 22 H -0.208 1.208 23 H -0.223 1.223 24 H -0.207 1.207 25 C 0.015 3.985 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.141 0.859 36 H 0.061 0.939 37 H 0.140 0.860 38 H 0.100 0.900 39 H 0.160 0.840 40 H 0.059 0.941 41 H 0.090 0.910 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.518 8.113 2.390 17.673 hybrid contribution -2.035 -0.799 -0.043 2.186 sum 13.483 7.314 2.347 15.518 Atomic orbital electron populations 1.21342 0.79609 1.01414 1.01125 1.47367 1.06630 1.05540 1.70687 1.20758 0.90385 0.82421 0.74947 1.90621 1.71171 1.32477 1.52456 1.22571 0.89723 0.98643 1.00428 1.23001 0.96706 0.99931 0.94995 1.22860 0.95915 0.92583 1.03234 1.22514 0.98739 0.99052 0.95557 1.23340 0.93669 0.93906 0.86439 0.91784 1.88828 1.56588 1.61002 1.23581 1.23646 0.99116 0.87348 0.93156 1.23455 1.03654 0.98594 0.92341 1.23033 0.96471 0.82717 0.98800 1.23042 0.90205 0.93781 0.94969 1.45850 1.14526 1.71354 1.04065 1.19086 0.91855 1.31306 0.92395 0.90426 1.25365 1.01548 1.02712 0.95230 1.69936 1.37877 1.53176 0.98503 0.85347 0.80289 0.78573 0.76295 1.20782 1.22317 1.20660 1.22526 0.92195 0.92205 0.91600 0.94312 0.92836 0.90678 0.91672 0.88027 0.89577 0.89159 0.89501 0.90475 0.85917 0.93921 0.85984 0.90005 0.84042 0.94111 0.91019 0.94377 0.93910 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.52 9.45 127.77 1.21 5.73 16 2 N -0.57 -20.46 3.07 -821.39 -2.52 -22.99 16 3 C 0.53 17.93 6.47 87.66 0.57 18.50 16 4 O -0.59 -24.28 15.03 -3.03 -0.05 -24.32 16 5 C -0.11 -2.73 0.49 -51.43 -0.03 -2.76 16 6 C -0.11 -2.07 4.65 32.42 0.15 -1.92 16 7 C -0.11 -1.63 6.94 32.70 0.23 -1.40 16 8 C -0.12 -2.33 6.50 31.69 0.21 -2.13 16 9 C 0.08 2.18 3.88 31.65 0.12 2.30 16 10 H 0.06 2.05 6.74 -2.38 -0.02 2.04 16 11 O -0.38 -9.62 11.08 -148.98 -1.65 -11.27 16 12 C 0.04 0.94 7.72 72.66 0.56 1.50 16 13 C -0.14 -2.94 4.71 31.83 0.15 -2.79 16 14 C 0.09 3.00 2.82 45.55 0.13 3.13 16 15 C 0.11 3.72 8.31 83.18 0.69 4.41 16 16 N -0.63 -29.07 2.51 -737.92 -1.85 -30.92 16 17 C -0.22 -11.41 10.54 84.04 0.89 -10.53 16 18 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 19 C -0.05 -2.95 5.50 84.86 0.47 -2.48 16 20 N -0.95 -53.63 11.50 21.65 0.25 -53.38 16 21 Si 0.97 44.28 29.55 68.60 2.03 46.31 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 23 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 C 0.14 5.85 6.45 83.27 0.54 6.38 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.05 2.21 7.35 -2.38 -0.02 2.19 16 28 H 0.07 3.62 5.74 -2.39 -0.01 3.60 16 29 H 0.06 1.41 7.93 -2.38 -0.02 1.39 16 30 H 0.10 1.55 6.12 -2.39 -0.01 1.54 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.09 1.54 8.08 -2.39 -0.02 1.52 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.12 1.77 7.62 -2.39 -0.02 1.75 16 38 H 0.08 1.89 6.58 -2.39 -0.02 1.87 16 39 H 0.14 3.36 3.34 -2.39 -0.01 3.35 16 40 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 43 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.05 2.22 6.16 -2.39 -0.01 2.21 16 Total: -1.00 -66.56 333.59 3.08 -63.48 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 1.00 Total: 15.15 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: 5.88 Total: 17.94 kcal Atomic # 7 Polarization: -103.17 SS G_CDS: -4.13 Total: -107.29 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -1.70 Total: -35.59 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -66.56 3.08 -63.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043320205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.977 kcal (2) G-P(sol) polarization free energy of solvation -66.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds