Wall clock time and date at job start Tue Mar 31 2020 03:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34773 * 120.00061 * 2 1 4 4 O 1.21278 * 120.00325 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.99805 * 359.97438 * 3 2 1 6 6 H 1.08998 * 115.55770 * 312.25151 * 5 3 2 7 7 C 1.53064 * 117.50513 * 166.48731 * 5 3 2 8 8 C 1.52708 * 59.93473 * 252.53507 * 7 5 3 9 9 C 1.53243 * 117.88467 * 107.78032 * 8 7 5 10 10 C 1.53336 * 108.48102 * 196.28079 * 9 8 7 11 11 O 1.42872 * 109.31426 * 306.01471 * 10 9 8 12 12 C 1.42872 * 114.52016 * 64.36953 * 11 10 9 13 13 C 1.53252 * 117.88148 * 252.22184 * 8 7 5 14 14 C 1.46497 * 120.00019 * 179.97438 * 2 1 3 15 15 C 1.53499 * 114.21005 * 60.00258 * 14 2 1 16 16 N 1.47065 * 87.98715 * 220.34437 * 15 14 2 17 17 C 1.36934 * 136.05833 * 207.08121 * 16 15 14 18 18 H 1.07995 * 120.00037 * 0.02562 * 17 16 15 19 19 C 1.38814 * 119.99827 * 179.72374 * 17 16 15 20 20 N 1.31622 * 120.00016 * 0.27654 * 19 17 16 21 21 Si 1.86805 * 119.99596 * 180.27674 * 19 17 16 22 22 H 1.48496 * 109.46989 * 90.00449 * 21 19 17 23 23 H 1.48502 * 109.46764 * 210.00198 * 21 19 17 24 24 H 1.48496 * 109.47113 * 329.99757 * 21 19 17 25 25 C 1.47073 * 87.88512 * 27.34017 * 16 15 14 26 26 H 1.08996 * 109.47075 * 269.99862 * 1 2 3 27 27 H 1.09006 * 109.47330 * 30.00208 * 1 2 3 28 28 H 1.09000 * 109.46958 * 149.99803 * 1 2 3 29 29 H 1.08999 * 117.50888 * 0.02562 * 7 5 3 30 30 H 1.09004 * 117.50380 * 145.06839 * 7 5 3 31 31 H 1.09000 * 109.63794 * 315.97738 * 9 8 7 32 32 H 1.09002 * 109.63790 * 76.58311 * 9 8 7 33 33 H 1.09002 * 109.49510 * 186.06055 * 10 9 8 34 34 H 1.08996 * 109.52172 * 65.98600 * 10 9 8 35 35 H 1.09000 * 109.49490 * 175.67127 * 12 11 10 36 36 H 1.09004 * 109.52292 * 55.59939 * 12 11 10 37 37 H 1.08997 * 109.63843 * 283.41801 * 13 8 7 38 38 H 1.09005 * 109.63574 * 43.82506 * 13 8 7 39 39 H 1.09007 * 113.28303 * 193.06912 * 14 2 1 40 40 H 1.08996 * 113.46928 * 105.55776 * 15 14 2 41 41 H 1.08998 * 113.46319 * 335.12686 * 15 14 2 42 42 H 0.96999 * 119.99687 * 179.97438 * 20 19 17 43 43 H 1.08995 * 113.46834 * 87.43387 * 25 16 15 44 44 H 1.08996 * 113.46682 * 217.87624 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 1 0.5779 2.5487 -0.7288 7 6 2.1749 3.7446 0.3167 8 6 1.1945 3.1772 1.3408 9 6 1.7728 2.5053 2.5908 10 6 0.6677 1.6710 3.2495 11 8 -0.4730 2.4987 3.4840 12 6 -1.0943 3.0014 2.2997 13 6 -0.1184 3.9333 1.5714 14 6 2.1975 -1.2687 0.0006 15 6 1.9061 -2.1643 -1.2115 16 7 1.9120 -3.3158 -0.2966 17 6 2.1800 -4.6548 -0.3986 18 1 2.4707 -5.0764 -1.3494 19 6 2.0842 -5.4690 0.7216 20 7 1.7304 -4.9550 1.8805 21 14 2.4575 -7.2942 0.5841 22 1 3.9007 -7.5254 0.8462 23 1 1.6476 -8.0414 1.5796 24 1 2.1206 -7.7667 -0.7828 25 6 1.4969 -2.3975 0.7746 26 1 -0.3633 0.0000 1.0276 27 1 -0.3634 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 3.2394 3.6376 0.5253 30 1 1.8871 4.6584 -0.2031 31 1 2.6019 1.8568 2.3078 32 1 2.1215 3.2672 3.2881 33 1 1.0290 1.2724 4.1975 34 1 0.3909 0.8481 2.5907 35 1 -1.9943 3.5548 2.5679 36 1 -1.3596 2.1700 1.6465 37 1 0.0697 4.8163 2.1821 38 1 -0.5411 4.2342 0.6127 39 1 3.2576 -1.1541 0.2269 40 1 2.7159 -2.1850 -1.9407 41 1 0.9335 -1.9762 -1.6663 42 1 1.6631 -5.5241 2.6631 43 1 0.4165 -2.2709 0.8433 44 1 1.9582 -2.6170 1.7374 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044378458.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:59 Heat of formation + Delta-G solvation = 8.511050 kcal Electronic energy + Delta-G solvation = -25020.368901 eV Core-core repulsion = 21554.844617 eV Total energy + Delta-G solvation = -3465.524283 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.72752 -39.13508 -37.86156 -36.22758 -34.48810 -32.04100 -31.38702 -30.27494 -27.92584 -26.73026 -25.02795 -24.62903 -23.87356 -23.10223 -22.35663 -20.04146 -18.94192 -18.38252 -17.23219 -16.71993 -16.36667 -16.15857 -16.01407 -15.08101 -15.00165 -14.87871 -14.26186 -13.93237 -13.83364 -13.55993 -13.16370 -12.89698 -12.60848 -12.52580 -12.24948 -12.07321 -11.81192 -11.58116 -11.48633 -11.35742 -11.15200 -10.94808 -10.87014 -10.79976 -10.47017 -10.22823 -10.16333 -10.06394 -9.55484 -9.48124 -9.30927 -8.86698 -8.13724 -6.95969 -5.83056 -3.16296 2.66146 3.17608 3.37428 3.42002 3.43746 3.63006 3.77226 4.31724 4.43388 4.53110 4.60674 4.64025 4.85006 4.87756 5.05069 5.21788 5.23772 5.27088 5.35403 5.40033 5.45499 5.47759 5.52697 5.55449 5.61300 5.69244 5.72627 5.83095 5.90068 5.94421 6.00916 6.06936 6.11752 6.15709 6.40059 6.53609 6.73852 7.11475 7.12359 7.28557 7.46664 7.72876 7.90652 8.43695 8.97370 9.63713 10.54890 11.34526 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024228 B = 0.003978 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.413202 B = 7037.701187 C = 7587.017965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.592 5.592 3 C 0.542 3.458 4 O -0.544 6.544 5 C -0.180 4.180 6 H 0.123 0.877 7 C -0.139 4.139 8 C -0.101 4.101 9 C -0.123 4.123 10 C 0.061 3.939 11 O -0.383 6.383 12 C 0.062 3.938 13 C -0.116 4.116 14 C 0.086 3.914 15 C 0.106 3.894 16 N -0.603 5.603 17 C -0.219 4.219 18 H 0.083 0.917 19 C -0.005 4.005 20 N -0.919 5.919 21 Si 0.915 3.085 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.150 3.850 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.119 0.881 40 H 0.043 0.957 41 H 0.034 0.966 42 H 0.255 0.745 43 H 0.030 0.970 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.138 19.016 -0.795 19.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.323 5.323 3 C 0.330 3.670 4 O -0.422 6.422 5 C -0.201 4.201 6 H 0.141 0.859 7 C -0.176 4.176 8 C -0.102 4.102 9 C -0.160 4.160 10 C -0.016 4.016 11 O -0.301 6.301 12 C -0.015 4.015 13 C -0.154 4.154 14 C -0.018 4.018 15 C -0.021 4.021 16 N -0.329 5.329 17 C -0.346 4.346 18 H 0.101 0.899 19 C -0.202 4.202 20 N -0.566 5.566 21 Si 0.745 3.255 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.206 1.206 25 C 0.023 3.977 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.126 0.874 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.136 0.864 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.533 18.648 -0.493 19.458 hybrid contribution 0.016 -1.120 -0.527 1.238 sum -5.517 17.528 -1.019 18.404 Atomic orbital electron populations 1.21829 0.80085 1.02816 1.01773 1.47846 1.06739 1.05953 1.71781 1.19553 0.87325 0.84250 0.75916 1.90676 1.13842 1.87258 1.50424 1.22449 1.03801 0.92658 1.01222 0.85918 1.23028 0.98659 0.95065 1.00831 1.21449 0.97827 1.01101 0.89791 1.21876 0.98871 0.99959 0.95327 1.22686 0.85325 0.92192 1.01387 1.87866 1.44182 1.67624 1.30441 1.22589 0.94962 0.96571 0.87419 1.21848 0.93584 0.98602 1.01354 1.23828 0.97907 0.79920 1.00123 1.22815 0.98109 0.87294 0.93908 1.45257 1.78544 1.03107 1.05965 1.18913 1.39813 0.80435 0.95485 0.89884 1.24814 1.01578 0.98394 0.95451 1.69821 1.52869 1.34555 0.99324 0.86070 0.77885 0.84309 0.77198 1.21369 1.21548 1.20592 1.22506 0.95914 0.84014 0.95247 0.92608 0.91686 0.90335 0.87430 0.88088 0.89983 0.90371 0.88572 0.92340 0.88911 0.92924 0.90270 0.90632 0.86366 0.93894 0.94892 0.93501 0.95251 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 8.89 59.85 0.53 1.52 16 2 N -0.59 -9.38 3.11 -173.55 -0.54 -9.92 16 3 C 0.54 8.52 5.91 -10.99 -0.06 8.45 16 4 O -0.54 -10.57 15.53 5.56 0.09 -10.48 16 5 C -0.18 -2.07 4.64 -91.87 -0.43 -2.50 16 6 H 0.12 1.16 7.02 -51.93 -0.36 0.79 16 7 C -0.14 -1.44 9.51 -26.85 -0.26 -1.70 16 8 C -0.10 -1.04 2.03 -154.54 -0.31 -1.35 16 9 C -0.12 -1.45 5.58 -26.43 -0.15 -1.60 16 10 C 0.06 0.73 6.85 37.33 0.26 0.98 16 11 O -0.38 -4.56 10.69 -35.23 -0.38 -4.94 16 12 C 0.06 0.55 6.84 37.33 0.26 0.81 16 13 C -0.12 -0.95 5.92 -26.43 -0.16 -1.10 16 14 C 0.09 1.70 4.58 -67.67 -0.31 1.39 16 15 C 0.11 2.23 8.24 -8.50 -0.07 2.16 16 16 N -0.60 -15.52 3.78 -184.60 -0.70 -16.22 16 17 C -0.22 -6.16 10.75 -15.06 -0.16 -6.32 16 18 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 19 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 20 N -0.92 -27.06 11.50 55.49 0.64 -26.43 16 21 Si 0.92 22.02 29.55 -169.99 -5.02 17.00 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 25 C 0.15 3.46 6.83 -8.36 -0.06 3.40 16 26 H 0.06 0.68 6.40 -51.93 -0.33 0.35 16 27 H 0.06 0.63 6.25 -51.93 -0.32 0.30 16 28 H 0.08 1.06 6.17 -51.93 -0.32 0.74 16 29 H 0.11 1.30 7.74 -51.93 -0.40 0.90 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.16 6.59 -51.93 -0.34 0.82 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 0.76 6.34 -51.93 -0.33 0.43 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 39 H 0.12 2.59 7.29 -51.93 -0.38 2.21 16 40 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.03 0.65 6.97 -51.93 -0.36 0.29 16 42 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.03 0.66 6.54 -51.93 -0.34 0.32 16 44 H 0.08 1.97 7.10 -51.93 -0.37 1.60 16 LS Contribution 343.18 15.07 5.17 5.17 Total: -1.00 -32.54 343.18 -8.55 -41.09 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.79 Total: 0.83 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -1.02 Total: 3.90 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.60 Total: -52.56 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.29 Total: -15.42 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.54 -8.55 -41.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044378458.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.598 kcal (2) G-P(sol) polarization free energy of solvation -32.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds