Wall clock time and date at job start Tue Mar 31 2020 03:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.58403 * 2 1 4 4 C 1.53189 * 109.58411 * 239.71939 * 2 1 3 5 5 C 1.53036 * 109.31292 * 185.43495 * 4 2 1 6 6 H 1.09000 * 109.46353 * 301.35575 * 5 4 2 7 7 N 1.46508 * 109.46139 * 181.38597 * 5 4 2 8 8 C 1.36934 * 119.99877 * 154.97521 * 7 5 4 9 9 H 1.08004 * 120.00360 * 359.72034 * 8 7 5 10 10 C 1.38809 * 119.99843 * 180.02562 * 8 7 5 11 11 N 1.31618 * 120.00008 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99968 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47164 * 89.99654 * 12 10 8 14 14 H 1.48500 * 109.47211 * 209.99409 * 12 10 8 15 15 H 1.48497 * 109.47195 * 329.99545 * 12 10 8 16 16 C 1.53039 * 109.52706 * 61.37338 * 5 4 2 17 17 C 1.53198 * 109.31063 * 298.61295 * 16 5 4 18 18 N 1.46919 * 109.70337 * 120.35954 * 2 1 3 19 19 C 1.34775 * 120.63227 * 353.48556 * 18 2 1 20 20 O 1.21613 * 120.00079 * 5.48432 * 19 18 2 21 21 C 1.47107 * 120.00063 * 185.47957 * 19 18 2 22 22 C 1.32081 * 118.87491 * 239.37942 * 21 19 18 23 23 C 1.50275 * 122.57827 * 180.10738 * 22 21 19 24 24 O 1.42893 * 110.14648 * 344.83344 * 23 22 21 25 25 C 1.43273 * 113.09815 * 50.31753 * 24 23 22 26 26 C 1.50413 * 118.87556 * 59.64273 * 21 19 18 27 27 H 1.08993 * 109.47342 * 183.61759 * 1 2 3 28 28 H 1.09006 * 109.46946 * 303.61809 * 1 2 3 29 29 H 1.09007 * 109.47215 * 63.61338 * 1 2 3 30 30 H 1.09008 * 109.50010 * 65.48437 * 4 2 1 31 31 H 1.08998 * 109.50127 * 305.38889 * 4 2 1 32 32 H 0.96998 * 119.99829 * 334.97720 * 7 5 4 33 33 H 0.96999 * 119.99876 * 180.02562 * 11 10 8 34 34 H 1.08998 * 109.50048 * 58.58088 * 16 5 4 35 35 H 1.09001 * 109.49704 * 178.67505 * 16 5 4 36 36 H 1.08994 * 109.59989 * 294.86645 * 17 16 5 37 37 H 1.09000 * 109.70035 * 174.50660 * 17 16 5 38 38 H 1.08003 * 118.71379 * 0.36695 * 22 21 19 39 39 H 1.08994 * 109.50952 * 224.51432 * 23 22 21 40 40 H 1.09000 * 109.06316 * 104.86749 * 23 22 21 41 41 H 1.09003 * 109.63889 * 171.47724 * 25 24 23 42 42 H 1.08997 * 109.81419 * 50.96044 * 25 24 23 43 43 H 1.09000 * 109.45716 * 283.37325 * 26 21 19 44 44 H 1.09001 * 109.45232 * 43.31316 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7277 -1.2464 5 6 3.5677 -0.8433 -1.1730 6 1 4.0045 0.1528 -1.1021 7 7 4.0653 -1.5096 -2.3792 8 6 5.3487 -1.2893 -2.8030 9 1 5.9927 -0.6210 -2.2506 10 6 5.8200 -1.9201 -3.9461 11 7 5.0335 -2.7303 -4.6224 12 14 7.5705 -1.6192 -4.5246 13 1 8.4764 -2.6170 -3.9010 14 1 7.6328 -1.7498 -6.0026 15 1 7.9940 -0.2516 -4.1303 16 6 3.9600 -1.6611 0.0597 17 6 3.4685 -0.9436 1.3209 18 7 2.0253 -0.6991 1.1935 19 6 1.1721 -1.1087 2.1530 20 8 -0.0273 -0.9906 1.9910 21 6 1.6918 -1.6986 3.3964 22 6 1.3333 -2.9287 3.7172 23 6 1.8122 -3.6111 4.9675 24 8 2.9265 -2.9054 5.5173 25 6 2.6873 -1.4999 5.6591 26 6 2.6084 -0.8782 4.2620 27 1 -0.3633 -1.0255 0.0648 28 1 -0.3633 0.5690 0.8558 29 1 -0.3634 0.4567 -0.9206 30 1 1.7637 -0.1653 -2.1373 31 1 1.6049 -1.7245 -1.2923 32 1 3.4857 -2.1066 -2.8776 33 1 5.3630 -3.1714 -5.4210 34 1 3.5032 -2.6490 0.0014 35 1 5.0445 -1.7630 0.0986 36 1 3.9920 0.0063 1.4287 37 1 3.6579 -1.5664 2.1953 38 1 0.6735 -3.4668 3.0527 39 1 2.1112 -4.6326 4.7330 40 1 1.0013 -3.6299 5.6956 41 1 3.5048 -1.0437 6.2174 42 1 1.7475 -1.3364 6.1865 43 1 3.6035 -0.8558 3.8179 44 1 2.2222 0.1382 4.3383 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044563384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:07 Heat of formation + Delta-G solvation = -39.504447 kcal Electronic energy + Delta-G solvation = -24645.776816 eV Core-core repulsion = 21178.170424 eV Total energy + Delta-G solvation = -3467.606391 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.74966 -39.21817 -37.38040 -34.56842 -34.32321 -32.15847 -31.94803 -31.38943 -29.30148 -27.18549 -26.14445 -24.30877 -24.22437 -22.92524 -22.12850 -20.47877 -19.63079 -18.29504 -17.24037 -17.05208 -16.59751 -15.92135 -15.53422 -15.38253 -15.08648 -14.82888 -14.09425 -13.89141 -13.80419 -13.62013 -13.28802 -13.15428 -12.85244 -12.81652 -12.48289 -12.16088 -12.00339 -11.77404 -11.59217 -11.40528 -11.01147 -10.92000 -10.81834 -10.77739 -10.45673 -10.26179 -10.13894 -9.84835 -9.72221 -9.37295 -8.92845 -8.89592 -8.42289 -6.99908 -5.79365 -3.08752 1.45687 2.72217 3.09763 3.41267 3.46421 3.48247 3.57136 4.34202 4.47404 4.55424 4.63104 4.85881 4.93048 5.05967 5.09612 5.14751 5.19429 5.25452 5.35164 5.35984 5.44449 5.47081 5.52669 5.58327 5.69157 5.82212 5.89773 5.99161 6.04253 6.12953 6.25112 6.29024 6.37508 6.44385 6.47938 6.53307 6.74257 6.77444 6.89380 7.03289 7.51817 7.66398 8.21827 8.38762 9.50044 10.07359 10.42188 11.43197 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019259 B = 0.003874 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.484295 B = 7226.230661 C = 8081.559808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.145 3.855 3 H 0.071 0.929 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.047 0.953 7 N -0.724 5.724 8 C -0.241 4.241 9 H 0.070 0.930 10 C -0.012 4.012 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.290 1.290 14 H -0.292 1.292 15 H -0.282 1.282 16 C -0.150 4.150 17 C 0.105 3.895 18 N -0.595 5.595 19 C 0.553 3.447 20 O -0.538 6.538 21 C -0.149 4.149 22 C -0.142 4.142 23 C 0.090 3.910 24 O -0.376 6.376 25 C 0.060 3.940 26 C -0.117 4.117 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.124 0.876 39 H 0.111 0.889 40 H 0.069 0.931 41 H 0.101 0.899 42 H 0.056 0.944 43 H 0.093 0.907 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.953 3.160 19.870 21.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.042 3.958 3 H 0.089 0.911 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.065 0.935 7 N -0.364 5.364 8 C -0.372 4.372 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.207 1.207 16 C -0.191 4.191 17 C -0.018 4.018 18 N -0.327 5.327 19 C 0.341 3.659 20 O -0.417 6.417 21 C -0.152 4.152 22 C -0.162 4.162 23 C 0.014 3.986 24 O -0.295 6.295 25 C -0.017 4.017 26 C -0.154 4.154 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.217 0.783 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.142 0.858 39 H 0.128 0.872 40 H 0.087 0.913 41 H 0.119 0.881 42 H 0.075 0.925 43 H 0.111 0.889 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.219 3.215 19.742 21.264 hybrid contribution 0.667 -0.042 -0.800 1.042 sum -6.552 3.173 18.942 20.292 Atomic orbital electron populations 1.22187 0.92854 1.03617 1.00407 1.21343 0.95404 0.95052 0.83954 0.91082 1.22296 0.97582 1.00971 0.96518 1.20166 0.90881 0.94968 0.87124 0.93460 1.42429 1.13035 1.54344 1.26588 1.19232 0.89238 1.22148 1.06556 0.91169 1.24746 0.98152 0.99834 0.98113 1.69664 1.35378 1.33524 1.19468 0.86208 0.84585 0.77678 0.77821 1.21711 1.21786 1.20749 1.22672 1.01739 1.00034 0.94671 1.21994 0.79279 1.00573 0.99952 1.48195 1.07762 1.56732 1.20004 1.18510 0.86154 0.77951 0.83296 1.90856 1.15204 1.55968 1.79626 1.20899 1.01009 0.96453 0.96795 1.23389 0.98807 0.95283 0.98689 1.21512 0.89399 0.96070 0.91659 1.88143 1.38331 1.19637 1.83356 1.22653 1.02091 0.81597 0.95331 1.21185 0.99536 0.99150 0.95513 0.91181 0.91540 0.93802 0.90593 0.91815 0.78262 0.93483 0.92232 0.90571 0.91522 0.89976 0.85765 0.87158 0.91307 0.88054 0.92544 0.88864 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 7.60 37.16 0.28 -1.66 16 2 C 0.15 2.13 3.49 -67.60 -0.24 1.90 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 4 C -0.13 -2.27 4.84 -26.61 -0.13 -2.40 16 5 C 0.18 3.43 2.73 -67.89 -0.19 3.24 16 6 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 7 N -0.72 -17.79 5.12 -53.38 -0.27 -18.06 16 8 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 9 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 10 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 11 N -0.93 -27.96 13.06 55.49 0.72 -27.23 16 12 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 C -0.15 -2.54 5.66 -26.61 -0.15 -2.69 16 17 C 0.11 1.39 5.57 -3.71 -0.02 1.37 16 18 N -0.59 -8.41 2.97 -166.60 -0.50 -8.91 16 19 C 0.55 7.99 6.89 -12.66 -0.09 7.90 16 20 O -0.54 -9.06 12.49 5.27 0.07 -8.99 16 21 C -0.15 -1.75 4.29 -103.09 -0.44 -2.19 16 22 C -0.14 -1.54 9.65 -36.44 -0.35 -1.89 16 23 C 0.09 0.78 7.04 35.80 0.25 1.03 16 24 O -0.38 -3.82 10.83 -35.23 -0.38 -4.20 16 25 C 0.06 0.49 6.88 37.22 0.26 0.74 16 26 C -0.12 -1.08 5.57 -27.96 -0.16 -1.24 16 27 H 0.07 1.14 6.74 -51.93 -0.35 0.79 16 28 H 0.07 1.00 6.76 -51.93 -0.35 0.65 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.30 8.14 -51.92 -0.42 0.87 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.38 10.17 7.80 -40.82 -0.32 9.85 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.99 4.90 -51.93 -0.25 0.73 16 38 H 0.12 1.38 7.99 -52.48 -0.42 0.96 16 39 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 43 H 0.09 0.84 6.11 -51.93 -0.32 0.52 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 343.17 15.07 5.17 5.17 Total: -1.00 -31.65 343.17 -8.47 -40.12 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -7.05 Total: 8.06 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -1.21 Total: -3.01 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.04 Total: -54.21 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.32 Total: -13.20 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.65 -8.47 -40.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044563384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.617 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds