Wall clock time and date at job start Tue Mar 31 2020 03:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.58403 * 2 1 4 4 C 1.53189 * 109.58411 * 239.71939 * 2 1 3 5 5 C 1.53036 * 109.31292 * 185.43495 * 4 2 1 6 6 H 1.09000 * 109.46353 * 301.35575 * 5 4 2 7 7 N 1.46508 * 109.46139 * 181.38597 * 5 4 2 8 8 C 1.36934 * 119.99877 * 154.97521 * 7 5 4 9 9 H 1.08004 * 120.00360 * 359.72034 * 8 7 5 10 10 C 1.38809 * 119.99843 * 180.02562 * 8 7 5 11 11 N 1.31618 * 120.00008 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99968 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47164 * 89.99654 * 12 10 8 14 14 H 1.48500 * 109.47211 * 209.99409 * 12 10 8 15 15 H 1.48497 * 109.47195 * 329.99545 * 12 10 8 16 16 C 1.53039 * 109.52706 * 61.37338 * 5 4 2 17 17 C 1.53198 * 109.31063 * 298.61295 * 16 5 4 18 18 N 1.46919 * 109.70337 * 120.35954 * 2 1 3 19 19 C 1.34775 * 120.63227 * 353.48556 * 18 2 1 20 20 O 1.21613 * 120.00079 * 5.48432 * 19 18 2 21 21 C 1.47107 * 120.00063 * 185.47957 * 19 18 2 22 22 C 1.32081 * 118.87491 * 239.37942 * 21 19 18 23 23 C 1.50275 * 122.57827 * 180.10738 * 22 21 19 24 24 O 1.42893 * 110.14648 * 344.83344 * 23 22 21 25 25 C 1.43273 * 113.09815 * 50.31753 * 24 23 22 26 26 C 1.50413 * 118.87556 * 59.64273 * 21 19 18 27 27 H 1.08993 * 109.47342 * 183.61759 * 1 2 3 28 28 H 1.09006 * 109.46946 * 303.61809 * 1 2 3 29 29 H 1.09007 * 109.47215 * 63.61338 * 1 2 3 30 30 H 1.09008 * 109.50010 * 65.48437 * 4 2 1 31 31 H 1.08998 * 109.50127 * 305.38889 * 4 2 1 32 32 H 0.96998 * 119.99829 * 334.97720 * 7 5 4 33 33 H 0.96999 * 119.99876 * 180.02562 * 11 10 8 34 34 H 1.08998 * 109.50048 * 58.58088 * 16 5 4 35 35 H 1.09001 * 109.49704 * 178.67505 * 16 5 4 36 36 H 1.08994 * 109.59989 * 294.86645 * 17 16 5 37 37 H 1.09000 * 109.70035 * 174.50660 * 17 16 5 38 38 H 1.08003 * 118.71379 * 0.36695 * 22 21 19 39 39 H 1.08994 * 109.50952 * 224.51432 * 23 22 21 40 40 H 1.09000 * 109.06316 * 104.86749 * 23 22 21 41 41 H 1.09003 * 109.63889 * 171.47724 * 25 24 23 42 42 H 1.08997 * 109.81419 * 50.96044 * 25 24 23 43 43 H 1.09000 * 109.45716 * 283.37325 * 26 21 19 44 44 H 1.09001 * 109.45232 * 43.31316 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7277 -1.2464 5 6 3.5677 -0.8433 -1.1730 6 1 4.0045 0.1528 -1.1021 7 7 4.0653 -1.5096 -2.3792 8 6 5.3487 -1.2893 -2.8030 9 1 5.9927 -0.6210 -2.2506 10 6 5.8200 -1.9201 -3.9461 11 7 5.0335 -2.7303 -4.6224 12 14 7.5705 -1.6192 -4.5246 13 1 8.4764 -2.6170 -3.9010 14 1 7.6328 -1.7498 -6.0026 15 1 7.9940 -0.2516 -4.1303 16 6 3.9600 -1.6611 0.0597 17 6 3.4685 -0.9436 1.3209 18 7 2.0253 -0.6991 1.1935 19 6 1.1721 -1.1087 2.1530 20 8 -0.0273 -0.9906 1.9910 21 6 1.6918 -1.6986 3.3964 22 6 1.3333 -2.9287 3.7172 23 6 1.8122 -3.6111 4.9675 24 8 2.9265 -2.9054 5.5173 25 6 2.6873 -1.4999 5.6591 26 6 2.6084 -0.8782 4.2620 27 1 -0.3633 -1.0255 0.0648 28 1 -0.3633 0.5690 0.8558 29 1 -0.3634 0.4567 -0.9206 30 1 1.7637 -0.1653 -2.1373 31 1 1.6049 -1.7245 -1.2923 32 1 3.4857 -2.1066 -2.8776 33 1 5.3630 -3.1714 -5.4210 34 1 3.5032 -2.6490 0.0014 35 1 5.0445 -1.7630 0.0986 36 1 3.9920 0.0063 1.4287 37 1 3.6579 -1.5664 2.1953 38 1 0.6735 -3.4668 3.0527 39 1 2.1112 -4.6326 4.7330 40 1 1.0013 -3.6299 5.6956 41 1 3.5048 -1.0437 6.2174 42 1 1.7475 -1.3364 6.1865 43 1 3.6035 -0.8558 3.8179 44 1 2.2222 0.1382 4.3383 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044563384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:07 Heat of formation + Delta-G solvation = -60.053908 kcal Electronic energy + Delta-G solvation = -24646.667907 eV Core-core repulsion = 21178.170424 eV Total energy + Delta-G solvation = -3468.497483 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.84225 -40.04276 -38.71991 -36.19917 -35.30226 -33.75504 -33.28124 -32.08045 -31.01856 -28.53680 -27.01760 -26.00972 -24.98512 -24.44057 -23.25453 -21.82723 -20.88539 -19.32302 -19.02358 -18.07678 -17.45877 -17.00094 -16.72547 -16.44474 -16.38741 -15.93815 -15.52923 -15.49442 -14.98699 -14.74135 -14.62108 -14.50090 -13.90100 -13.72293 -13.48031 -13.44663 -13.26334 -13.09743 -12.87796 -12.66150 -12.63628 -12.50605 -12.16633 -12.07178 -11.97492 -11.76044 -11.63845 -11.38960 -10.92230 -10.84678 -10.27758 -9.92254 -9.63349 -9.02061 -7.93377 -5.22592 0.56955 1.48617 1.49883 1.58178 1.62819 2.01674 2.56779 2.92237 3.38641 3.41424 3.69663 3.74022 3.81906 3.93609 3.98535 4.05187 4.21534 4.25924 4.28458 4.32000 4.46988 4.51590 4.54043 4.59101 4.67757 4.71714 4.72370 4.78636 4.83856 4.97093 4.99541 5.04258 5.10231 5.18957 5.26530 5.37980 5.47262 5.52491 5.53696 5.67147 6.12870 6.27866 6.38818 7.08816 7.34009 8.08918 8.32373 9.30371 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019259 B = 0.003874 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.484295 B = 7226.230661 C = 8081.559808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.149 3.851 3 H 0.090 0.910 4 C -0.123 4.123 5 C 0.174 3.826 6 H 0.052 0.948 7 N -0.738 5.738 8 C -0.236 4.236 9 H 0.080 0.920 10 C -0.077 4.077 11 N -0.973 5.973 12 Si 0.971 3.029 13 H -0.288 1.288 14 H -0.299 1.299 15 H -0.267 1.267 16 C -0.140 4.140 17 C 0.116 3.884 18 N -0.596 5.596 19 C 0.549 3.451 20 O -0.567 6.567 21 C -0.166 4.166 22 C -0.138 4.138 23 C 0.090 3.910 24 O -0.393 6.393 25 C 0.059 3.941 26 C -0.113 4.113 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.369 0.631 33 H 0.249 0.751 34 H 0.040 0.960 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.124 0.876 40 H 0.088 0.912 41 H 0.122 0.878 42 H 0.064 0.936 43 H 0.097 0.903 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.040 4.304 22.126 23.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.046 3.954 3 H 0.108 0.892 4 C -0.162 4.162 5 C 0.066 3.934 6 H 0.070 0.930 7 N -0.377 5.377 8 C -0.368 4.368 9 H 0.098 0.902 10 C -0.269 4.269 11 N -0.624 5.624 12 Si 0.801 3.199 13 H -0.215 1.215 14 H -0.226 1.226 15 H -0.191 1.191 16 C -0.181 4.181 17 C -0.007 4.007 18 N -0.328 5.328 19 C 0.339 3.661 20 O -0.448 6.448 21 C -0.168 4.168 22 C -0.157 4.157 23 C 0.014 3.986 24 O -0.311 6.311 25 C -0.018 4.018 26 C -0.150 4.150 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.201 0.799 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.132 0.868 39 H 0.142 0.858 40 H 0.106 0.894 41 H 0.140 0.860 42 H 0.083 0.917 43 H 0.115 0.885 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.299 4.392 22.057 23.355 hybrid contribution 0.291 -0.406 -1.461 1.544 sum -6.007 3.986 20.596 21.822 Atomic orbital electron populations 1.22034 0.92716 1.02282 1.00883 1.21305 0.95407 0.95598 0.83097 0.89193 1.22151 0.95913 1.00342 0.97834 1.20407 0.92150 0.94832 0.86031 0.93008 1.42663 1.12300 1.54522 1.28241 1.19646 0.90168 1.20960 1.06022 0.90183 1.25554 1.02041 1.00462 0.98836 1.69830 1.37231 1.35288 1.20013 0.85166 0.80059 0.78127 0.76582 1.21509 1.22618 1.19128 1.22453 1.01067 0.99075 0.95477 1.21966 0.78742 1.01587 0.98362 1.48241 1.08138 1.56627 1.19803 1.18980 0.85773 0.77289 0.84022 1.90842 1.16473 1.57045 1.80409 1.20952 1.02530 0.97155 0.96213 1.23606 0.97832 0.95045 0.99257 1.21652 0.89786 0.96231 0.90892 1.88126 1.38985 1.20702 1.83322 1.22817 1.03479 0.80669 0.94806 1.21225 0.98938 0.99166 0.95690 0.93330 0.91797 0.92579 0.90974 0.93523 0.79925 0.94179 0.94143 0.91409 0.89167 0.88168 0.86757 0.85843 0.89402 0.85968 0.91724 0.88453 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.49 7.60 71.98 0.55 -2.94 16 2 C 0.15 4.19 3.49 44.98 0.16 4.35 16 3 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 4 C -0.12 -4.14 4.84 30.67 0.15 -3.99 16 5 C 0.17 6.59 2.73 45.01 0.12 6.71 16 6 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 7 N -0.74 -36.70 5.12 -322.81 -1.65 -38.35 16 8 C -0.24 -12.78 9.93 84.03 0.83 -11.95 16 9 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 10 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 11 N -0.97 -59.62 13.06 21.65 0.28 -59.34 16 12 Si 0.97 45.51 29.55 68.60 2.03 47.53 16 13 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 14 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 15 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 16 C -0.14 -4.62 5.66 30.67 0.17 -4.45 16 17 C 0.12 2.82 5.57 86.36 0.48 3.30 16 18 N -0.60 -16.00 2.97 -799.27 -2.38 -18.38 16 19 C 0.55 15.30 6.89 86.57 0.60 15.89 16 20 O -0.57 -18.93 12.49 -4.07 -0.05 -18.98 16 21 C -0.17 -3.62 4.29 -18.58 -0.08 -3.70 16 22 C -0.14 -2.78 9.65 24.60 0.24 -2.55 16 23 C 0.09 1.36 7.04 71.10 0.50 1.86 16 24 O -0.39 -6.90 10.83 -148.98 -1.61 -8.52 16 25 C 0.06 0.77 6.88 72.02 0.50 1.27 16 26 C -0.11 -1.78 5.57 29.80 0.17 -1.62 16 27 H 0.05 1.59 6.74 -2.39 -0.02 1.58 16 28 H 0.06 1.87 6.76 -2.38 -0.02 1.86 16 29 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.37 20.20 7.80 -92.71 -0.72 19.47 16 33 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 34 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.10 2.15 4.90 -2.39 -0.01 2.13 16 38 H 0.11 2.49 7.99 -2.91 -0.02 2.47 16 39 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.06 0.75 8.10 -2.39 -0.02 0.73 16 43 H 0.10 1.43 6.11 -2.39 -0.01 1.42 16 44 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -68.58 343.17 1.73 -66.84 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: 0.27 Total: 30.91 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 4.85 Total: -1.72 kcal Atomic # 7 Polarization: -112.33 SS G_CDS: -3.75 Total: -116.07 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -1.66 Total: -27.50 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -68.58 1.73 -66.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044563384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.791 kcal (2) G-P(sol) polarization free energy of solvation -68.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds