Wall clock time and date at job start Tue Mar 31 2020 03:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.70429 * 2 1 4 4 C 1.53195 * 109.58533 * 120.35077 * 2 1 3 5 5 C 1.53038 * 109.31132 * 174.42241 * 4 2 1 6 6 H 1.09001 * 109.46028 * 58.64888 * 5 4 2 7 7 N 1.46503 * 109.46133 * 178.61991 * 5 4 2 8 8 C 1.36934 * 120.00064 * 205.00284 * 7 5 4 9 9 H 1.07996 * 120.00386 * 359.97438 * 8 7 5 10 10 C 1.38816 * 119.99838 * 179.97438 * 8 7 5 11 11 N 1.31615 * 119.99966 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 120.00105 * 0.02562 * 10 8 7 13 13 H 1.48494 * 109.47232 * 89.99540 * 12 10 8 14 14 H 1.48505 * 109.46805 * 209.99961 * 12 10 8 15 15 H 1.48505 * 109.46892 * 329.99187 * 12 10 8 16 16 C 1.53046 * 109.54200 * 298.63713 * 5 4 2 17 17 C 1.52768 * 109.37874 * 61.24008 * 16 5 4 18 18 N 1.46920 * 109.58921 * 239.64513 * 2 1 3 19 19 C 1.34780 * 120.63195 * 6.57796 * 18 2 1 20 20 O 1.21279 * 119.99683 * 354.85094 * 19 18 2 21 21 C 1.50699 * 119.99949 * 174.84168 * 19 18 2 22 22 H 1.08991 * 115.51481 * 325.59420 * 21 19 18 23 23 C 1.53010 * 117.38062 * 110.88807 * 21 19 18 24 24 H 1.08993 * 119.80636 * 355.38277 * 23 21 19 25 25 C 1.54478 * 118.06165 * 198.10288 * 23 21 19 26 26 O 1.44421 * 104.80687 * 273.17066 * 25 23 21 27 27 C 1.44426 * 105.27370 * 40.51281 * 26 25 23 28 28 C 1.53002 * 117.43122 * 180.21204 * 21 19 18 29 29 H 1.09007 * 119.80739 * 5.71763 * 28 21 19 30 30 H 1.09000 * 109.47549 * 176.06352 * 1 2 3 31 31 H 1.09000 * 109.47577 * 296.06734 * 1 2 3 32 32 H 1.09008 * 109.47343 * 56.06357 * 1 2 3 33 33 H 1.08998 * 109.50095 * 294.37701 * 4 2 1 34 34 H 1.09001 * 109.49446 * 54.44534 * 4 2 1 35 35 H 0.96997 * 119.99665 * 24.99784 * 7 5 4 36 36 H 0.97000 * 120.00243 * 180.02562 * 11 10 8 37 37 H 1.09001 * 109.49730 * 181.31573 * 16 5 4 38 38 H 1.08999 * 109.49701 * 301.41604 * 16 5 4 39 39 H 1.08996 * 109.50497 * 185.70581 * 17 16 5 40 40 H 1.08996 * 109.42983 * 65.42538 * 17 16 5 41 41 H 1.09002 * 110.37105 * 154.33778 * 25 23 21 42 42 H 1.09005 * 110.37685 * 32.00863 * 25 23 21 43 43 H 1.08993 * 110.37827 * 200.65998 * 27 26 25 44 44 H 1.09003 * 110.46183 * 78.36537 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0434 -0.7293 1.2455 5 6 3.5674 -0.8479 1.1702 6 1 4.0060 0.1474 1.0992 7 7 4.0651 -1.5157 2.3755 8 6 5.3496 -1.2986 2.7976 9 1 5.9959 -0.6355 2.2418 10 6 5.8210 -1.9310 3.9399 11 7 7.0557 -1.7228 4.3453 12 14 4.7033 -3.0786 4.9008 13 1 4.8455 -4.4610 4.3776 14 1 5.0824 -3.0512 6.3365 15 1 3.2937 -2.6356 4.7526 16 6 3.9569 -1.6657 -0.0634 17 6 3.4644 -0.9518 -1.3210 18 7 2.0225 -0.6995 -1.1944 19 6 1.1673 -1.1070 -2.1531 20 8 -0.0282 -0.9814 -1.9925 21 6 1.6968 -1.7185 -3.4247 22 1 2.6423 -1.3117 -3.7830 23 6 1.4417 -3.2106 -3.6474 24 1 0.9626 -3.8008 -2.8663 25 6 2.3094 -3.9484 -4.6910 26 8 1.6233 -3.7519 -5.9466 27 6 1.1689 -2.3813 -5.9214 28 6 0.6742 -2.1559 -4.4754 29 1 -0.3829 -1.9348 -4.3278 30 1 -0.3634 -1.0252 -0.0705 31 1 -0.3634 0.4516 0.9231 32 1 -0.3634 0.5737 -0.8527 33 1 1.7659 -0.1667 2.1369 34 1 1.6025 -1.7250 1.2917 35 1 3.4847 -2.1115 2.8745 36 1 7.3852 -2.1649 5.1433 37 1 5.0412 -1.7695 -0.1035 38 1 3.4983 -2.6528 -0.0051 39 1 3.6504 -1.5797 -2.1923 40 1 3.9928 -0.0049 -1.4309 41 1 2.3683 -5.0104 -4.4529 42 1 3.3074 -3.5120 -4.7315 43 1 0.3517 -2.2393 -6.6285 44 1 1.9908 -1.7031 -6.1513 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044714195.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:14 Heat of formation + Delta-G solvation = -36.980750 kcal Electronic energy + Delta-G solvation = -24509.771155 eV Core-core repulsion = 21042.274199 eV Total energy + Delta-G solvation = -3467.496956 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.05342 -40.72129 -38.77015 -36.31760 -35.75524 -33.94129 -33.62288 -31.55292 -29.68420 -28.60262 -27.10128 -25.89873 -24.27249 -23.91918 -22.20626 -21.71743 -21.54951 -20.17227 -19.50516 -18.24621 -17.33598 -16.89870 -16.71919 -16.44418 -16.24008 -16.08388 -15.87302 -15.26335 -15.09751 -14.74347 -14.65398 -14.26772 -13.94109 -13.78415 -13.56221 -13.34689 -13.18554 -13.00082 -12.77084 -12.66926 -12.61233 -12.53922 -12.11079 -12.05498 -11.96093 -11.79158 -11.42299 -11.35931 -11.28613 -10.93841 -10.64057 -10.14157 -9.62036 -9.31358 -8.01717 -5.34588 1.32889 1.37919 1.39424 1.46916 1.84597 2.48243 2.52119 3.03324 3.23126 3.29960 3.47223 3.52761 3.69568 3.81719 3.88039 3.97649 4.00497 4.09407 4.12843 4.24231 4.31334 4.41049 4.53482 4.57185 4.61960 4.66964 4.74674 4.78422 4.81495 4.83440 4.96631 4.98988 5.03254 5.06943 5.12433 5.23300 5.38953 5.47330 5.67727 5.72551 5.78655 6.22525 6.40988 7.08308 7.13728 7.85020 8.02986 9.19646 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020663 B = 0.003782 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.728510 B = 7401.172106 C = 8097.647231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.149 3.851 3 H 0.086 0.914 4 C -0.128 4.128 5 C 0.176 3.824 6 H 0.050 0.950 7 N -0.753 5.753 8 C -0.224 4.224 9 H 0.063 0.937 10 C -0.062 4.062 11 N -0.983 5.983 12 Si 0.949 3.051 13 H -0.281 1.281 14 H -0.298 1.298 15 H -0.255 1.255 16 C -0.142 4.142 17 C 0.115 3.885 18 N -0.599 5.599 19 C 0.541 3.459 20 O -0.563 6.563 21 C -0.147 4.147 22 H 0.148 0.852 23 C -0.167 4.167 24 H 0.116 0.884 25 C 0.075 3.925 26 O -0.392 6.392 27 C 0.074 3.926 28 C -0.162 4.162 29 H 0.121 0.879 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.362 0.638 36 H 0.257 0.743 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.109 0.891 40 H 0.084 0.916 41 H 0.110 0.890 42 H 0.083 0.917 43 H 0.112 0.888 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.687 0.326 -20.090 23.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.046 3.954 3 H 0.104 0.896 4 C -0.167 4.167 5 C 0.068 3.932 6 H 0.068 0.932 7 N -0.395 5.395 8 C -0.355 4.355 9 H 0.081 0.919 10 C -0.254 4.254 11 N -0.634 5.634 12 Si 0.777 3.223 13 H -0.207 1.207 14 H -0.225 1.225 15 H -0.180 1.180 16 C -0.182 4.182 17 C -0.007 4.007 18 N -0.331 5.331 19 C 0.330 3.670 20 O -0.443 6.443 21 C -0.168 4.168 22 H 0.165 0.835 23 C -0.186 4.186 24 H 0.134 0.866 25 C -0.002 4.002 26 O -0.311 6.311 27 C -0.002 4.002 28 C -0.180 4.180 29 H 0.139 0.861 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.195 0.805 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.127 0.873 40 H 0.102 0.898 41 H 0.128 0.872 42 H 0.101 0.899 43 H 0.130 0.870 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.128 0.337 -20.166 24.066 hybrid contribution -0.103 -0.606 1.584 1.699 sum -13.231 -0.269 -18.583 22.813 Atomic orbital electron populations 1.22039 0.92613 1.02443 1.00837 1.21278 0.95440 0.95533 0.83137 0.89623 1.22207 0.95353 1.00980 0.98127 1.20400 0.92320 0.94917 0.85584 0.93237 1.42845 1.11496 1.55541 1.29657 1.19032 0.88698 1.21398 1.06350 0.91937 1.25420 0.97551 1.02613 0.99798 1.69864 1.17306 1.49189 1.27044 0.85494 0.79640 0.79405 0.77730 1.20716 1.22517 1.18005 1.22350 1.01205 0.99501 0.95186 1.21802 0.78629 1.01592 0.98703 1.48169 1.08193 1.56902 1.19828 1.19891 0.85662 0.77320 0.84153 1.90743 1.16778 1.56890 1.79911 1.22481 1.02217 0.97321 0.94767 0.83496 1.24182 1.03007 0.89296 1.02102 0.86623 1.23065 0.94722 1.01809 0.80567 1.89181 1.74656 1.29568 1.37687 1.23074 1.00286 0.83233 0.93572 1.24180 0.98804 1.02940 0.92118 0.86147 0.92974 0.92695 0.91927 0.90566 0.92469 0.80491 0.93448 0.91588 0.92806 0.87333 0.89800 0.87229 0.89853 0.86975 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.10 7.59 71.98 0.55 -2.55 16 2 C 0.15 3.72 3.49 44.97 0.16 3.87 16 3 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 4 C -0.13 -3.70 4.84 30.67 0.15 -3.55 16 5 C 0.18 6.04 2.73 45.02 0.12 6.16 16 6 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 7 N -0.75 -33.45 4.92 -322.80 -1.59 -35.04 16 8 C -0.22 -12.21 10.41 84.03 0.87 -11.33 16 9 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 10 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 11 N -0.98 -61.86 13.97 21.65 0.30 -61.56 16 12 Si 0.95 44.96 27.74 68.60 1.90 46.86 16 13 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 14 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 15 H -0.26 -11.00 6.52 99.48 0.65 -10.35 16 16 C -0.14 -4.13 5.64 30.53 0.17 -3.95 16 17 C 0.12 2.38 6.22 86.22 0.54 2.92 16 18 N -0.60 -13.85 2.98 -795.86 -2.37 -16.22 16 19 C 0.54 12.81 7.38 87.66 0.65 13.46 16 20 O -0.56 -16.50 11.75 -3.03 -0.04 -16.54 16 21 C -0.15 -2.53 4.37 -11.54 -0.05 -2.58 16 22 H 0.15 1.81 7.08 -2.39 -0.02 1.79 16 23 C -0.17 -2.84 6.91 -9.78 -0.07 -2.91 16 24 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 25 C 0.07 1.07 7.44 72.48 0.54 1.61 16 26 O -0.39 -7.03 11.65 -148.98 -1.74 -8.76 16 27 C 0.07 1.01 7.44 72.49 0.54 1.55 16 28 C -0.16 -2.74 6.65 -9.78 -0.06 -2.81 16 29 H 0.12 2.38 7.82 -2.38 -0.02 2.37 16 30 H 0.05 1.51 6.73 -2.39 -0.02 1.50 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.67 6.77 -2.38 -0.02 1.66 16 33 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.36 15.84 5.66 -92.71 -0.52 15.32 16 36 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 37 H 0.07 2.14 8.14 -2.39 -0.02 2.13 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.11 1.67 5.87 -2.39 -0.01 1.66 16 40 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.11 1.37 8.14 -2.39 -0.02 1.36 16 42 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -69.05 342.43 1.45 -67.60 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.41 Total: 26.90 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 4.57 Total: -3.24 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -3.66 Total: -112.81 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -1.77 Total: -25.30 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.90 Total: 46.86 kcal Total: -69.05 1.45 -67.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044714195.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.618 kcal (2) G-P(sol) polarization free energy of solvation -69.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds