Wall clock time and date at job start Tue Mar 31 2020 03:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.58650 * 2 1 4 4 C 1.53192 * 109.58938 * 120.28340 * 2 1 3 5 5 C 1.53071 * 109.29677 * 174.27840 * 4 2 1 6 6 H 1.08997 * 109.45443 * 178.75643 * 5 4 2 7 7 N 1.46502 * 109.33369 * 58.86573 * 5 4 2 8 8 C 1.36938 * 120.00054 * 154.86358 * 7 5 4 9 9 H 1.08005 * 119.99982 * 359.97438 * 8 7 5 10 10 C 1.38808 * 120.00084 * 179.97438 * 8 7 5 11 11 N 1.31613 * 119.99997 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00007 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47205 * 89.99926 * 12 10 8 14 14 H 1.48497 * 109.47386 * 209.99915 * 12 10 8 15 15 H 1.48503 * 109.47155 * 330.00456 * 12 10 8 16 16 C 1.53042 * 109.65855 * 298.85050 * 5 4 2 17 17 C 1.53193 * 109.31566 * 61.29851 * 16 5 4 18 18 N 1.46925 * 109.58439 * 239.71699 * 2 1 3 19 19 C 1.34777 * 120.63253 * 6.58116 * 18 2 1 20 20 O 1.21283 * 119.99632 * 5.71389 * 19 18 2 21 21 C 1.50698 * 120.00089 * 185.71129 * 19 18 2 22 22 H 1.09003 * 115.51335 * 325.37031 * 21 19 18 23 23 C 1.52998 * 117.43255 * 110.65482 * 21 19 18 24 24 H 1.08999 * 119.80682 * 355.36016 * 23 21 19 25 25 C 1.54483 * 118.06547 * 198.08552 * 23 21 19 26 26 O 1.44420 * 104.80117 * 273.17135 * 25 23 21 27 27 C 1.44423 * 105.27939 * 40.51339 * 26 25 23 28 28 C 1.53003 * 117.43336 * 179.97438 * 21 19 18 29 29 H 1.08998 * 119.80376 * 5.65468 * 28 21 19 30 30 H 1.08996 * 109.46890 * 174.21904 * 1 2 3 31 31 H 1.09006 * 109.46771 * 294.21945 * 1 2 3 32 32 H 1.08999 * 109.47203 * 54.22022 * 1 2 3 33 33 H 1.09001 * 109.49807 * 294.37606 * 4 2 1 34 34 H 1.09002 * 109.49271 * 54.46909 * 4 2 1 35 35 H 0.97000 * 120.00184 * 334.86016 * 7 5 4 36 36 H 0.97001 * 119.99663 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.49507 * 301.34397 * 16 5 4 38 38 H 1.09004 * 109.49845 * 181.25482 * 16 5 4 39 39 H 1.09001 * 109.58631 * 185.57731 * 17 16 5 40 40 H 1.09000 * 109.70258 * 65.22480 * 17 16 5 41 41 H 1.09001 * 110.36906 * 154.33806 * 25 23 21 42 42 H 1.09005 * 110.46999 * 32.04910 * 25 23 21 43 43 H 1.09000 * 110.37224 * 200.65976 * 27 26 25 44 44 H 1.09000 * 110.37131 * 78.31499 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 3.5675 -0.8495 1.1690 6 1 3.9379 -1.3474 2.0651 7 7 4.1568 0.4886 1.0753 8 6 5.4407 0.7026 1.5007 9 1 6.0188 -0.1149 1.9056 10 6 5.9992 1.9702 1.4114 11 7 5.2949 2.9664 0.9175 12 14 7.7504 2.2623 1.9923 13 1 8.6898 2.0400 0.8638 14 1 7.8839 3.6587 2.4797 15 1 8.0698 1.3204 3.0950 16 6 3.9569 -1.6656 -0.0657 17 6 3.4650 -0.9453 -1.3250 18 7 2.0225 -0.6980 -1.1954 19 6 1.1673 -1.1043 -2.1546 20 8 -0.0060 -0.8047 -2.0873 21 6 1.6690 -1.9305 -3.3107 22 1 2.6766 -1.6953 -3.6535 23 6 1.2273 -3.3940 -3.3752 24 1 0.6373 -3.8182 -2.5628 25 6 2.0365 -4.3586 -4.2703 26 8 1.4427 -4.2318 -5.5806 27 6 1.1752 -2.8218 -5.7424 28 6 0.6475 -2.3603 -4.3656 29 1 -0.3763 -1.9903 -4.3108 30 1 -0.3633 -1.0224 -0.1035 31 1 -0.3633 0.4216 0.9373 32 1 -0.3633 0.6008 -0.8337 33 1 1.7661 -0.1642 2.1370 34 1 1.6030 -1.7237 1.2934 35 1 3.6375 1.2229 0.7120 36 1 5.6851 3.8523 0.8555 37 1 3.4983 -2.6528 -0.0086 38 1 5.0413 -1.7695 -0.1060 39 1 3.6518 -1.5690 -2.1992 40 1 3.9901 0.0037 -1.4343 41 1 1.9414 -5.3822 -3.9079 42 1 3.0853 -4.0629 -4.2987 43 1 0.4184 -2.6649 -6.5110 44 1 2.0913 -2.2885 -5.9962 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044714199.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:19 Heat of formation + Delta-G solvation = -17.872200 kcal Electronic energy + Delta-G solvation = -24874.889884 eV Core-core repulsion = 21408.221537 eV Total energy + Delta-G solvation = -3466.668347 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.01103 -39.67405 -37.45160 -34.84817 -34.21915 -32.41458 -31.93729 -29.13046 -28.96533 -27.19744 -26.13524 -24.14249 -23.50654 -22.89212 -21.23856 -20.83384 -19.77931 -18.38305 -17.25920 -17.14392 -16.27869 -15.90608 -15.38776 -15.36154 -15.13182 -14.49926 -14.07754 -13.92163 -13.86491 -13.48254 -13.28124 -12.91311 -12.77413 -12.56680 -12.09868 -11.98948 -11.83868 -11.73385 -11.51895 -11.17388 -10.95125 -10.82698 -10.69116 -10.54854 -10.45998 -10.41477 -10.26670 -9.98560 -9.88091 -9.67298 -8.99253 -8.87543 -8.19161 -7.02968 -5.82718 -3.11920 2.45771 3.06205 3.38766 3.44765 3.46279 3.47369 3.76395 4.20958 4.38217 4.54058 4.64593 4.65989 4.84643 4.90621 5.10163 5.22191 5.25366 5.34076 5.41199 5.45809 5.48098 5.49913 5.56627 5.67785 5.73380 5.78073 5.86344 5.91409 5.97810 6.10756 6.13874 6.26628 6.40605 6.42951 6.46279 6.56290 6.68725 6.74697 6.80530 7.02656 7.64684 7.70524 8.35631 8.37588 9.47168 10.03569 10.38447 11.39673 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020646 B = 0.004021 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.883462 B = 6962.604259 C = 7580.568850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.145 3.855 3 H 0.081 0.919 4 C -0.132 4.132 5 C 0.173 3.827 6 H 0.051 0.949 7 N -0.722 5.722 8 C -0.240 4.240 9 H 0.070 0.930 10 C -0.011 4.011 11 N -0.932 5.932 12 Si 0.905 3.095 13 H -0.290 1.290 14 H -0.292 1.292 15 H -0.282 1.282 16 C -0.148 4.148 17 C 0.113 3.887 18 N -0.590 5.590 19 C 0.542 3.458 20 O -0.542 6.542 21 C -0.148 4.148 22 H 0.123 0.877 23 C -0.166 4.166 24 H 0.126 0.874 25 C 0.074 3.926 26 O -0.373 6.373 27 C 0.073 3.927 28 C -0.162 4.162 29 H 0.134 0.866 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.049 0.951 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.066 0.934 43 H 0.100 0.900 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.592 -12.384 -8.838 17.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.043 3.957 3 H 0.099 0.901 4 C -0.171 4.171 5 C 0.063 3.937 6 H 0.069 0.931 7 N -0.365 5.365 8 C -0.372 4.372 9 H 0.088 0.912 10 C -0.207 4.207 11 N -0.580 5.580 12 Si 0.736 3.264 13 H -0.218 1.218 14 H -0.218 1.218 15 H -0.208 1.208 16 C -0.189 4.189 17 C -0.009 4.009 18 N -0.322 5.322 19 C 0.330 3.670 20 O -0.421 6.421 21 C -0.169 4.169 22 H 0.141 0.859 23 C -0.184 4.184 24 H 0.144 0.856 25 C -0.003 4.003 26 O -0.292 6.292 27 C -0.004 4.004 28 C -0.181 4.181 29 H 0.152 0.848 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.118 0.882 42 H 0.084 0.916 43 H 0.118 0.882 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.069 -12.382 -8.856 17.230 hybrid contribution 1.129 0.712 0.460 1.412 sum -6.940 -11.670 -8.396 15.964 Atomic orbital electron populations 1.22187 0.93279 1.02916 1.00820 1.21267 0.94778 0.96136 0.83542 0.90142 1.22244 0.97417 1.00169 0.97309 1.20207 0.90406 0.88146 0.94981 0.93102 1.42517 1.13827 1.04660 1.75460 1.19232 0.89803 0.94157 1.33970 0.91196 1.24718 0.98253 0.95883 1.01871 1.69650 1.36493 1.00612 1.51266 0.86227 0.84766 0.77126 0.78263 1.21775 1.21833 1.20806 1.22497 1.01398 0.97921 0.97081 1.21780 0.79083 1.01784 0.98273 1.48086 1.07804 1.56515 1.19821 1.19368 0.85654 0.79652 0.82348 1.90719 1.17290 1.57369 1.76693 1.22521 1.00462 0.96009 0.97922 0.85882 1.24115 1.03296 0.88858 1.02180 0.85647 1.22940 0.95966 0.99667 0.81687 1.89179 1.81761 1.24315 1.33927 1.22967 1.00340 0.81758 0.95337 1.24160 1.00469 1.02942 0.90489 0.84835 0.92294 0.93885 0.90687 0.90668 0.92193 0.78144 0.93482 0.93250 0.90790 0.91126 0.89694 0.88175 0.91563 0.88159 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 7.61 37.16 0.28 -1.84 16 2 C 0.15 2.41 3.19 -67.60 -0.22 2.20 16 3 H 0.08 1.53 6.65 -51.93 -0.35 1.18 16 4 C -0.13 -2.15 5.08 -26.60 -0.14 -2.28 16 5 C 0.17 3.17 3.10 -67.87 -0.21 2.96 16 6 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 7 N -0.72 -16.65 4.31 -53.37 -0.23 -16.88 16 8 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 9 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 10 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 11 N -0.93 -27.03 13.06 55.49 0.72 -26.31 16 12 Si 0.90 21.60 29.55 -169.99 -5.02 16.57 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 C -0.15 -2.34 5.78 -26.61 -0.15 -2.50 16 17 C 0.11 1.73 6.08 -3.71 -0.02 1.71 16 18 N -0.59 -9.22 2.97 -165.22 -0.49 -9.71 16 19 C 0.54 8.21 7.28 -10.99 -0.08 8.13 16 20 O -0.54 -9.35 11.91 5.56 0.07 -9.29 16 21 C -0.15 -1.76 4.66 -91.77 -0.43 -2.19 16 22 H 0.12 1.32 6.59 -51.93 -0.34 0.98 16 23 C -0.17 -1.74 6.91 -89.08 -0.62 -2.35 16 24 H 0.13 1.34 8.14 -51.93 -0.42 0.92 16 25 C 0.07 0.68 7.44 37.94 0.28 0.96 16 26 O -0.37 -4.10 11.65 -35.23 -0.41 -4.51 16 27 C 0.07 0.68 7.44 37.94 0.28 0.96 16 28 C -0.16 -1.77 6.65 -89.07 -0.59 -2.36 16 29 H 0.13 1.57 7.82 -51.93 -0.41 1.17 16 30 H 0.06 0.95 6.94 -51.93 -0.36 0.59 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.28 6.56 -51.93 -0.34 0.94 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.38 9.51 6.06 -40.82 -0.25 9.26 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.07 0.88 5.53 -51.93 -0.29 0.60 16 40 H 0.08 1.56 7.74 -51.93 -0.40 1.15 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 340.95 15.07 5.14 5.14 Total: -1.00 -29.66 340.95 -9.00 -38.66 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -6.92 Total: 9.73 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -1.85 Total: -3.40 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.00 Total: -52.90 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.34 Total: -13.80 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.66 -9.00 -38.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044714199.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.790 kcal (2) G-P(sol) polarization free energy of solvation -29.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds