Wall clock time and date at job start Tue Mar 31 2020 03:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.58650 * 2 1 4 4 C 1.53192 * 109.58938 * 120.28340 * 2 1 3 5 5 C 1.53071 * 109.29677 * 174.27840 * 4 2 1 6 6 H 1.08997 * 109.45443 * 178.75643 * 5 4 2 7 7 N 1.46502 * 109.33369 * 58.86573 * 5 4 2 8 8 C 1.36938 * 120.00054 * 154.86358 * 7 5 4 9 9 H 1.08005 * 119.99982 * 359.97438 * 8 7 5 10 10 C 1.38808 * 120.00084 * 179.97438 * 8 7 5 11 11 N 1.31613 * 119.99997 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00007 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47205 * 89.99926 * 12 10 8 14 14 H 1.48497 * 109.47386 * 209.99915 * 12 10 8 15 15 H 1.48503 * 109.47155 * 330.00456 * 12 10 8 16 16 C 1.53042 * 109.65855 * 298.85050 * 5 4 2 17 17 C 1.53193 * 109.31566 * 61.29851 * 16 5 4 18 18 N 1.46925 * 109.58439 * 239.71699 * 2 1 3 19 19 C 1.34777 * 120.63253 * 6.58116 * 18 2 1 20 20 O 1.21283 * 119.99632 * 5.71389 * 19 18 2 21 21 C 1.50698 * 120.00089 * 185.71129 * 19 18 2 22 22 H 1.09003 * 115.51335 * 325.37031 * 21 19 18 23 23 C 1.52998 * 117.43255 * 110.65482 * 21 19 18 24 24 H 1.08999 * 119.80682 * 355.36016 * 23 21 19 25 25 C 1.54483 * 118.06547 * 198.08552 * 23 21 19 26 26 O 1.44420 * 104.80117 * 273.17135 * 25 23 21 27 27 C 1.44423 * 105.27939 * 40.51339 * 26 25 23 28 28 C 1.53003 * 117.43336 * 179.97438 * 21 19 18 29 29 H 1.08998 * 119.80376 * 5.65468 * 28 21 19 30 30 H 1.08996 * 109.46890 * 174.21904 * 1 2 3 31 31 H 1.09006 * 109.46771 * 294.21945 * 1 2 3 32 32 H 1.08999 * 109.47203 * 54.22022 * 1 2 3 33 33 H 1.09001 * 109.49807 * 294.37606 * 4 2 1 34 34 H 1.09002 * 109.49271 * 54.46909 * 4 2 1 35 35 H 0.97000 * 120.00184 * 334.86016 * 7 5 4 36 36 H 0.97001 * 119.99663 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.49507 * 301.34397 * 16 5 4 38 38 H 1.09004 * 109.49845 * 181.25482 * 16 5 4 39 39 H 1.09001 * 109.58631 * 185.57731 * 17 16 5 40 40 H 1.09000 * 109.70258 * 65.22480 * 17 16 5 41 41 H 1.09001 * 110.36906 * 154.33806 * 25 23 21 42 42 H 1.09005 * 110.46999 * 32.04910 * 25 23 21 43 43 H 1.09000 * 110.37224 * 200.65976 * 27 26 25 44 44 H 1.09000 * 110.37131 * 78.31499 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 3.5675 -0.8495 1.1690 6 1 3.9379 -1.3474 2.0651 7 7 4.1568 0.4886 1.0753 8 6 5.4407 0.7026 1.5007 9 1 6.0188 -0.1149 1.9056 10 6 5.9992 1.9702 1.4114 11 7 5.2949 2.9664 0.9175 12 14 7.7504 2.2623 1.9923 13 1 8.6898 2.0400 0.8638 14 1 7.8839 3.6587 2.4797 15 1 8.0698 1.3204 3.0950 16 6 3.9569 -1.6656 -0.0657 17 6 3.4650 -0.9453 -1.3250 18 7 2.0225 -0.6980 -1.1954 19 6 1.1673 -1.1043 -2.1546 20 8 -0.0060 -0.8047 -2.0873 21 6 1.6690 -1.9305 -3.3107 22 1 2.6766 -1.6953 -3.6535 23 6 1.2273 -3.3940 -3.3752 24 1 0.6373 -3.8182 -2.5628 25 6 2.0365 -4.3586 -4.2703 26 8 1.4427 -4.2318 -5.5806 27 6 1.1752 -2.8218 -5.7424 28 6 0.6475 -2.3603 -4.3656 29 1 -0.3763 -1.9903 -4.3108 30 1 -0.3633 -1.0224 -0.1035 31 1 -0.3633 0.4216 0.9373 32 1 -0.3633 0.6008 -0.8337 33 1 1.7661 -0.1642 2.1370 34 1 1.6030 -1.7237 1.2934 35 1 3.6375 1.2229 0.7120 36 1 5.6851 3.8523 0.8555 37 1 3.4983 -2.6528 -0.0086 38 1 5.0413 -1.7695 -0.1060 39 1 3.6518 -1.5690 -2.1992 40 1 3.9901 0.0037 -1.4343 41 1 1.9414 -5.3822 -3.9079 42 1 3.0853 -4.0629 -4.2987 43 1 0.4184 -2.6649 -6.5110 44 1 2.0913 -2.2885 -5.9962 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044714199.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:18 Heat of formation + Delta-G solvation = -35.947464 kcal Electronic energy + Delta-G solvation = -24875.673686 eV Core-core repulsion = 21408.221537 eV Total energy + Delta-G solvation = -3467.452149 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.04581 -40.72978 -38.79129 -35.90539 -35.72110 -33.82880 -33.54377 -30.85525 -29.67980 -28.53595 -27.11305 -25.74359 -25.15073 -23.92391 -22.39551 -21.67091 -21.01646 -19.68142 -19.17022 -18.24209 -17.37898 -16.91040 -16.70475 -16.31727 -16.15210 -16.01008 -15.64374 -15.42263 -15.11951 -14.73657 -14.63212 -14.25798 -13.86759 -13.58783 -13.45909 -13.28706 -12.97420 -12.86162 -12.69450 -12.67089 -12.53363 -12.46402 -12.11851 -11.99475 -11.95051 -11.60877 -11.42912 -11.33778 -11.27906 -10.89034 -10.63380 -10.12749 -9.53132 -8.95346 -7.90016 -5.17321 1.35535 1.49955 1.50537 1.58556 1.89514 2.52549 2.59337 3.03983 3.24814 3.44022 3.55090 3.70490 3.83968 3.88054 3.88393 3.99884 4.07616 4.08023 4.14258 4.32221 4.36586 4.41431 4.49138 4.62264 4.68126 4.75865 4.78610 4.82264 4.83790 4.89663 4.99145 5.05252 5.09120 5.12174 5.24452 5.25699 5.35424 5.39677 5.58362 5.71347 5.72357 6.31846 6.48411 7.16083 7.38976 8.14987 8.37991 9.33369 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020646 B = 0.004021 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.883462 B = 6962.604259 C = 7580.568850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.146 3.854 3 H 0.049 0.951 4 C -0.121 4.121 5 C 0.165 3.835 6 H 0.049 0.951 7 N -0.731 5.731 8 C -0.230 4.230 9 H 0.077 0.923 10 C -0.074 4.074 11 N -0.970 5.970 12 Si 0.966 3.034 13 H -0.289 1.289 14 H -0.302 1.302 15 H -0.271 1.271 16 C -0.138 4.138 17 C 0.119 3.881 18 N -0.592 5.592 19 C 0.539 3.461 20 O -0.566 6.566 21 C -0.154 4.154 22 H 0.138 0.862 23 C -0.154 4.154 24 H 0.124 0.876 25 C 0.075 3.925 26 O -0.390 6.390 27 C 0.075 3.925 28 C -0.165 4.165 29 H 0.121 0.879 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.372 0.628 36 H 0.248 0.752 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.105 0.895 40 H 0.049 0.951 41 H 0.117 0.883 42 H 0.080 0.920 43 H 0.113 0.887 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.176 -14.861 -9.394 18.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.043 3.957 3 H 0.067 0.933 4 C -0.160 4.160 5 C 0.056 3.944 6 H 0.067 0.933 7 N -0.373 5.373 8 C -0.362 4.362 9 H 0.095 0.905 10 C -0.266 4.266 11 N -0.622 5.622 12 Si 0.796 3.204 13 H -0.216 1.216 14 H -0.230 1.230 15 H -0.195 1.195 16 C -0.179 4.179 17 C -0.003 4.003 18 N -0.324 5.324 19 C 0.328 3.672 20 O -0.447 6.447 21 C -0.174 4.174 22 H 0.156 0.844 23 C -0.173 4.173 24 H 0.142 0.858 25 C -0.002 4.002 26 O -0.309 6.309 27 C -0.001 4.001 28 C -0.184 4.184 29 H 0.139 0.861 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.205 0.795 36 H 0.056 0.944 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.123 0.877 40 H 0.067 0.933 41 H 0.135 0.865 42 H 0.098 0.902 43 H 0.131 0.869 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.653 -14.924 -9.409 19.231 hybrid contribution 0.909 1.427 0.637 1.808 sum -6.744 -13.497 -8.771 17.453 Atomic orbital electron populations 1.22019 0.92470 1.02547 1.00713 1.21129 0.95245 0.94815 0.84550 0.93347 1.22123 0.95883 1.01210 0.96753 1.20469 0.91552 0.86205 0.96160 0.93306 1.42679 1.13036 1.06326 1.75221 1.19609 0.90794 0.94027 1.31815 0.90478 1.25427 1.01757 0.96029 1.03350 1.69811 1.38007 1.00667 1.53675 0.85249 0.80812 0.76386 0.77965 1.21596 1.22960 1.19550 1.22347 1.01181 0.98727 0.95597 1.21706 0.78472 1.00548 0.99560 1.48102 1.08034 1.56499 1.19747 1.19903 0.85249 0.79389 0.82661 1.90712 1.18409 1.58276 1.77318 1.22435 1.01266 0.96703 0.97035 0.84436 1.24186 1.02872 0.88278 1.01966 0.85803 1.23094 0.96234 1.00211 0.80623 1.89171 1.82037 1.24982 1.34687 1.23057 1.01266 0.81219 0.94596 1.24179 0.99643 1.02980 0.91591 0.86129 0.92305 0.92767 0.92351 0.91223 0.89863 0.79478 0.94352 0.90282 0.91462 0.87685 0.93263 0.86491 0.90214 0.86879 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.76 7.61 71.98 0.55 -3.21 16 2 C 0.15 4.85 3.19 44.98 0.14 4.99 16 3 H 0.05 1.93 6.65 -2.39 -0.02 1.91 16 4 C -0.12 -3.78 5.08 30.68 0.16 -3.63 16 5 C 0.16 5.86 3.10 45.03 0.14 6.00 16 6 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 7 N -0.73 -33.98 4.31 -322.76 -1.39 -35.37 16 8 C -0.23 -11.98 9.93 84.03 0.83 -11.14 16 9 H 0.08 3.83 7.83 -2.91 -0.02 3.81 16 10 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 11 N -0.97 -57.81 13.06 21.65 0.28 -57.52 16 12 Si 0.97 44.73 29.55 68.60 2.03 46.76 16 13 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 14 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 15 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 16 C -0.14 -4.07 5.78 30.67 0.18 -3.89 16 17 C 0.12 3.48 6.08 86.36 0.52 4.01 16 18 N -0.59 -17.99 2.97 -795.01 -2.36 -20.36 16 19 C 0.54 15.70 7.28 87.66 0.64 16.34 16 20 O -0.57 -19.35 11.91 -3.04 -0.04 -19.39 16 21 C -0.15 -3.31 4.66 -11.54 -0.05 -3.36 16 22 H 0.14 2.54 6.59 -2.39 -0.02 2.53 16 23 C -0.15 -2.82 6.91 -9.80 -0.07 -2.89 16 24 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 25 C 0.07 1.12 7.44 72.49 0.54 1.66 16 26 O -0.39 -7.46 11.65 -148.98 -1.74 -9.19 16 27 C 0.07 1.22 7.44 72.49 0.54 1.76 16 28 C -0.17 -3.30 6.65 -9.79 -0.07 -3.36 16 29 H 0.12 2.75 7.82 -2.39 -0.02 2.73 16 30 H 0.06 1.83 6.94 -2.39 -0.02 1.82 16 31 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.06 2.02 6.56 -2.39 -0.02 2.00 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.37 19.03 6.06 -92.71 -0.56 18.47 16 36 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 39 H 0.11 2.33 5.53 -2.39 -0.01 2.32 16 40 H 0.05 1.81 7.74 -2.39 -0.02 1.80 16 41 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.11 1.52 8.14 -2.39 -0.02 1.51 16 44 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -64.40 340.95 1.74 -62.66 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: 0.44 Total: 32.73 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 4.52 Total: -0.31 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -3.47 Total: -113.25 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -1.77 Total: -28.58 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -64.40 1.74 -62.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044714199.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.708 kcal (2) G-P(sol) polarization free energy of solvation -64.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds