Wall clock time and date at job start Tue Mar 31 2020 02:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.50704 * 120.00333 * 2 1 4 4 C 1.32999 * 120.00201 * 179.97438 * 2 1 3 5 5 C 1.47095 * 119.99445 * 355.18325 * 4 2 1 6 6 O 1.21612 * 120.00741 * 353.46680 * 5 4 2 7 7 N 1.34783 * 119.99823 * 173.46757 * 5 4 2 8 8 C 1.46982 * 120.72406 * 176.67997 * 7 5 4 9 9 C 1.53156 * 108.44727 * 234.56067 * 8 7 5 10 10 C 1.52508 * 109.79388 * 305.48090 * 9 8 7 11 11 H 1.09001 * 108.92839 * 179.66032 * 10 9 8 12 12 O 1.42681 * 110.62739 * 298.69751 * 10 9 8 13 13 C 1.43078 * 113.87094 * 185.36559 * 12 10 9 14 14 C 1.53649 * 109.37082 * 298.22015 * 13 12 10 15 15 N 1.47174 * 108.47956 * 51.81567 * 14 13 12 16 16 C 1.36932 * 121.22760 * 129.02672 * 15 14 13 17 17 H 1.08002 * 119.99867 * 192.80673 * 16 15 14 18 18 C 1.38815 * 119.99656 * 12.81014 * 16 15 14 19 19 N 1.31610 * 120.00200 * 36.21903 * 18 16 15 20 20 Si 1.86795 * 119.99523 * 216.21806 * 18 16 15 21 21 H 1.48498 * 109.47267 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.47686 * 300.00028 * 20 18 16 23 23 H 1.48500 * 109.47464 * 59.99937 * 20 18 16 24 24 C 1.47599 * 117.54582 * 308.75866 * 15 14 13 25 25 H 1.09003 * 110.30804 * 173.56484 * 24 15 14 26 26 C 1.46802 * 120.72087 * 356.69971 * 7 5 4 27 27 H 1.08996 * 109.46997 * 265.76386 * 1 2 3 28 28 H 1.09005 * 109.46670 * 25.75595 * 1 2 3 29 29 H 1.08998 * 109.46852 * 145.75722 * 1 2 3 30 30 H 1.09003 * 109.47126 * 240.00102 * 3 2 1 31 31 H 1.09003 * 109.47058 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47379 * 119.99435 * 3 2 1 33 33 H 1.08000 * 120.00345 * 175.17960 * 4 2 1 34 34 H 1.09003 * 109.63690 * 354.24909 * 8 7 5 35 35 H 1.08996 * 109.64367 * 114.86866 * 8 7 5 36 36 H 1.09001 * 109.41281 * 65.58198 * 9 8 7 37 37 H 1.09004 * 109.41482 * 185.37847 * 9 8 7 38 38 H 1.09003 * 109.47733 * 58.34041 * 13 12 10 39 39 H 1.08997 * 109.47962 * 178.35882 * 13 12 10 40 40 H 1.09009 * 109.75419 * 292.09529 * 14 13 12 41 41 H 1.09003 * 109.66927 * 171.48725 * 14 13 12 42 42 H 0.97001 * 120.00227 * 356.66572 * 19 18 16 43 43 H 1.09003 * 109.51767 * 5.77281 * 26 7 5 44 44 H 1.09000 * 109.57446 * 245.62154 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1720 -1.1518 0.0005 5 6 1.4404 -2.4233 0.1081 6 8 0.2421 -2.4198 0.3156 7 7 2.0980 -3.5924 -0.0234 8 6 1.3971 -4.8723 0.1529 9 6 2.1432 -5.6918 1.2100 10 6 3.6101 -5.8297 0.8161 11 1 4.1284 -6.4093 1.5800 12 8 3.7338 -6.5144 -0.4296 13 6 5.0861 -6.7896 -0.8072 14 6 5.8471 -5.4658 -0.9777 15 7 5.6532 -4.6566 0.2363 16 6 6.7173 -4.1098 0.9024 17 1 6.5817 -3.6995 1.8922 18 6 7.9702 -4.0828 0.3054 19 7 8.0774 -3.8823 -0.9909 20 14 9.5042 -4.3310 1.3421 21 1 10.7061 -4.2585 0.4730 22 1 9.5779 -3.2705 2.3790 23 1 9.4481 -5.6618 1.9985 24 6 4.2691 -4.4512 0.7058 25 1 4.2680 -3.9369 1.6669 26 6 3.5301 -3.6152 -0.3455 27 1 -0.3633 -0.0759 1.0248 28 1 -0.3633 0.9256 -0.4466 29 1 -0.3633 -0.8495 -0.5783 30 1 2.8872 1.3628 -0.8900 31 1 1.5523 2.1336 -0.0005 32 1 2.8872 1.3629 0.8900 33 1 3.2492 -1.1535 -0.0781 34 1 0.3758 -4.6877 0.4860 35 1 1.3850 -5.4166 -0.7913 36 1 2.0727 -5.1889 2.1745 37 1 1.6934 -6.6819 1.2849 38 1 5.5646 -7.3898 -0.0333 39 1 5.0960 -7.3370 -1.7497 40 1 5.4595 -4.9267 -1.8422 41 1 6.9092 -5.6684 -1.1163 42 1 7.2796 -3.8017 -1.5368 43 1 3.9204 -2.5975 -0.3418 44 1 3.6758 -4.0576 -1.3309 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074150795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:32 Heat of formation + Delta-G solvation = -43.915327 kcal Electronic energy + Delta-G solvation = -25333.945482 eV Core-core repulsion = 21866.147820 eV Total energy + Delta-G solvation = -3467.797662 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.65334 -40.30960 -37.44947 -36.77695 -36.23013 -33.43192 -33.39972 -31.22764 -29.13779 -29.03293 -28.62664 -26.12651 -25.48046 -24.58261 -23.11141 -21.53422 -20.23459 -19.58781 -18.97550 -18.46456 -17.25053 -16.85690 -16.66402 -16.65209 -16.06629 -15.78246 -15.46311 -15.38429 -15.03345 -14.97998 -14.56840 -14.23775 -14.03157 -13.86280 -13.60987 -13.39357 -13.26012 -13.24847 -12.86441 -12.65867 -12.45971 -12.42546 -12.34575 -12.04013 -11.94215 -11.80485 -11.72667 -11.27356 -10.94181 -10.56466 -10.27187 -10.19090 -9.64089 -8.90645 -8.43524 -5.26589 0.34929 1.59111 1.65359 1.84843 1.98432 2.20604 2.59372 2.77801 3.10696 3.29072 3.61901 3.68297 3.87632 3.93727 4.01119 4.09177 4.10112 4.19428 4.30185 4.33309 4.46895 4.50416 4.53839 4.64781 4.68374 4.72159 4.78717 4.79739 4.86541 4.87532 4.88919 4.98119 5.03302 5.14809 5.17287 5.18178 5.44640 5.54849 5.62438 5.74646 6.21912 6.31480 6.39761 6.89649 7.14695 7.72016 8.13950 8.93941 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014961 B = 0.005470 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.074303 B = 5117.444783 C = 6466.062046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.019 4.019 3 C -0.127 4.127 4 C -0.266 4.266 5 C 0.544 3.456 6 O -0.572 6.572 7 N -0.604 5.604 8 C 0.118 3.882 9 C -0.112 4.112 10 C 0.085 3.915 11 H 0.048 0.952 12 O -0.383 6.383 13 C 0.055 3.945 14 C 0.113 3.887 15 N -0.608 5.608 16 C -0.366 4.366 17 H 0.058 0.942 18 C -0.066 4.066 19 N -0.930 5.930 20 Si 1.109 2.891 21 H -0.293 1.293 22 H -0.279 1.279 23 H -0.283 1.283 24 C 0.136 3.864 25 H 0.068 0.932 26 C 0.114 3.886 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.124 0.876 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.045 0.955 39 H 0.112 0.888 40 H 0.015 0.985 41 H 0.069 0.931 42 H 0.258 0.742 43 H 0.075 0.925 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.848 2.134 2.151 12.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.021 4.021 3 C -0.183 4.183 4 C -0.286 4.286 5 C 0.337 3.663 6 O -0.455 6.455 7 N -0.336 5.336 8 C -0.004 4.004 9 C -0.150 4.150 10 C 0.026 3.974 11 H 0.066 0.934 12 O -0.302 6.302 13 C -0.022 4.022 14 C -0.013 4.013 15 N -0.332 5.332 16 C -0.494 4.494 17 H 0.076 0.924 18 C -0.263 4.263 19 N -0.572 5.572 20 Si 0.935 3.065 21 H -0.219 1.219 22 H -0.205 1.205 23 H -0.209 1.209 24 C 0.028 3.972 25 H 0.086 0.914 26 C -0.011 4.011 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.141 0.859 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.064 0.936 39 H 0.130 0.870 40 H 0.033 0.967 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.918 2.040 2.130 11.309 hybrid contribution -0.846 0.115 -0.068 0.857 sum -11.764 2.155 2.062 12.136 Atomic orbital electron populations 1.21199 0.90626 1.03066 1.03074 1.22929 0.97201 0.95008 0.86982 1.21091 1.00637 0.93063 1.03513 1.22476 1.00439 0.92136 1.13584 1.18822 0.86550 0.84793 0.76117 1.90661 1.15194 1.87658 1.51980 1.48109 1.09923 1.06286 1.69234 1.21552 0.96595 0.82772 0.99444 1.21780 0.92190 1.02140 0.98886 1.22234 0.96778 0.92313 0.86084 0.93399 1.87761 1.26386 1.76962 1.39087 1.23133 0.82269 0.96163 1.00679 1.21770 1.00072 0.91419 0.88055 1.44622 1.01033 1.57686 1.29886 1.20105 0.89340 1.41085 0.98910 0.92398 1.26838 1.02546 0.98645 0.98320 1.70987 1.32136 1.46251 1.07796 0.82889 0.72668 0.77161 0.73823 1.21896 1.20457 1.20946 1.21655 0.84273 0.94927 0.96373 0.91424 1.22127 0.78874 1.01129 0.98996 0.90727 0.90094 0.91037 0.90056 0.88995 0.90050 0.85853 0.88781 0.91152 0.89700 0.87728 0.93626 0.87034 0.96718 0.91320 0.93168 0.90684 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.91 8.51 71.24 0.61 -2.31 16 2 C -0.02 -0.48 6.11 -17.61 -0.11 -0.58 16 3 C -0.13 -2.29 10.06 71.24 0.72 -1.57 16 4 C -0.27 -8.06 8.97 23.43 0.21 -7.85 16 5 C 0.54 18.45 7.51 86.57 0.65 19.11 16 6 O -0.57 -20.62 12.65 -4.07 -0.05 -20.67 16 7 N -0.60 -20.16 2.96 -823.20 -2.44 -22.60 16 8 C 0.12 3.46 6.26 86.34 0.54 4.00 16 9 C -0.11 -3.03 5.82 30.48 0.18 -2.85 16 10 C 0.09 2.92 2.73 30.49 0.08 3.00 16 11 H 0.05 1.71 8.11 -2.39 -0.02 1.69 16 12 O -0.38 -13.54 9.59 -148.98 -1.43 -14.97 16 13 C 0.06 2.01 6.99 72.20 0.50 2.51 16 14 C 0.11 5.02 4.42 86.47 0.38 5.40 16 15 N -0.61 -28.64 2.70 -671.54 -1.81 -30.45 16 16 C -0.37 -19.41 9.60 84.03 0.81 -18.60 16 17 H 0.06 3.11 7.99 -2.91 -0.02 3.09 16 18 C -0.07 -3.56 4.57 84.86 0.39 -3.17 16 19 N -0.93 -53.53 12.40 21.65 0.27 -53.26 16 20 Si 1.11 48.83 30.04 68.60 2.06 50.90 16 21 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 24 C 0.14 5.38 3.03 44.95 0.14 5.52 16 25 H 0.07 2.80 7.96 -2.39 -0.02 2.78 16 26 C 0.11 4.24 5.53 86.42 0.48 4.72 16 27 H 0.07 1.80 8.12 -2.39 -0.02 1.78 16 28 H 0.08 1.42 7.97 -2.38 -0.02 1.40 16 29 H 0.07 2.05 5.87 -2.39 -0.01 2.04 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 1.23 7.89 -2.39 -0.02 1.21 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.12 3.87 5.90 -2.91 -0.02 3.86 16 34 H 0.09 2.67 7.03 -2.39 -0.02 2.65 16 35 H 0.07 2.08 7.94 -2.39 -0.02 2.06 16 36 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.05 1.66 8.13 -2.39 -0.02 1.65 16 39 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 40 H 0.01 0.68 7.01 -2.38 -0.02 0.67 16 41 H 0.07 3.45 5.75 -2.39 -0.01 3.44 16 42 H 0.26 15.02 6.57 -92.71 -0.61 14.41 16 43 H 0.07 2.90 5.31 -2.39 -0.01 2.89 16 44 H 0.05 2.16 6.54 -2.39 -0.02 2.14 16 Total: -1.00 -63.03 336.58 3.32 -59.70 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 1.15 Total: 24.04 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 5.57 Total: 7.32 kcal Atomic # 7 Polarization: -102.33 SS G_CDS: -3.98 Total: -106.32 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -1.48 Total: -35.64 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 2.06 Total: 50.90 kcal Total: -63.03 3.32 -59.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074150795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.788 kcal (2) G-P(sol) polarization free energy of solvation -63.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds