Wall clock time and date at job start Tue Mar 31 2020 02:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.50703 * 119.99749 * 2 1 4 4 C 1.32991 * 120.00144 * 180.02562 * 2 1 3 5 5 C 1.47108 * 120.00026 * 359.97438 * 4 2 1 6 6 O 1.21613 * 119.99740 * 5.46677 * 5 4 2 7 7 N 1.34771 * 120.00179 * 185.46215 * 5 4 2 8 8 C 1.46846 * 120.40604 * 354.89778 * 7 5 4 9 9 C 1.52903 * 109.49910 * 232.18503 * 8 7 5 10 10 C 1.52786 * 108.89170 * 306.42091 * 9 8 7 11 11 H 1.08998 * 108.94962 * 302.95109 * 10 9 8 12 12 O 1.42768 * 111.77685 * 182.72619 * 10 9 8 13 13 C 1.43143 * 114.27312 * 177.09337 * 12 10 9 14 14 C 1.53200 * 109.73682 * 61.35572 * 13 12 10 15 15 N 1.47351 * 108.80352 * 308.78850 * 14 13 12 16 16 C 1.36936 * 121.30453 * 230.26319 * 15 14 13 17 17 H 1.07994 * 120.00684 * 152.29253 * 16 15 14 18 18 C 1.38820 * 119.99531 * 332.29469 * 16 15 14 19 19 N 1.31616 * 119.99784 * 332.96013 * 18 16 15 20 20 Si 1.86800 * 119.99936 * 152.96265 * 18 16 15 21 21 H 1.48507 * 109.46969 * 94.98670 * 20 18 16 22 22 H 1.48497 * 109.47288 * 214.98591 * 20 18 16 23 23 H 1.48499 * 109.47224 * 334.98743 * 20 18 16 24 24 C 1.46876 * 117.39480 * 50.23368 * 15 14 13 25 25 H 1.09003 * 109.65416 * 68.36762 * 24 15 14 26 26 C 1.47118 * 120.40864 * 175.18298 * 7 5 4 27 27 H 1.09000 * 109.46650 * 240.00055 * 1 2 3 28 28 H 1.08999 * 109.46833 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47189 * 120.00194 * 1 2 3 30 30 H 1.09007 * 109.46626 * 270.00091 * 3 2 1 31 31 H 1.09002 * 109.47248 * 30.00159 * 3 2 1 32 32 H 1.08995 * 109.47007 * 150.00119 * 3 2 1 33 33 H 1.07994 * 120.00230 * 180.02562 * 4 2 1 34 34 H 1.08999 * 109.50914 * 352.18052 * 8 7 5 35 35 H 1.09001 * 109.50607 * 112.31456 * 8 7 5 36 36 H 1.09003 * 109.65190 * 186.52939 * 9 8 7 37 37 H 1.08996 * 109.42728 * 66.17809 * 9 8 7 38 38 H 1.08997 * 109.42438 * 301.28079 * 13 12 10 39 39 H 1.08989 * 109.38864 * 181.41123 * 13 12 10 40 40 H 1.08994 * 109.58207 * 188.98950 * 14 13 12 41 41 H 1.09001 * 109.57833 * 68.58096 * 14 13 12 42 42 H 0.97000 * 119.99648 * 180.02562 * 19 18 16 43 43 H 1.09008 * 109.72609 * 246.43986 * 26 7 5 44 44 H 1.09005 * 109.73201 * 7.11121 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4365 -2.4257 -0.0005 6 8 0.2245 -2.4281 -0.1004 7 7 2.1059 -3.5903 0.1101 8 6 3.5742 -3.6056 0.1187 9 6 4.0804 -4.5954 -0.9311 10 6 3.4208 -5.9523 -0.6904 11 1 3.6398 -6.2768 0.3269 12 8 3.8987 -6.9426 -1.6011 13 6 3.3637 -8.2518 -1.3807 14 6 1.8418 -8.2248 -1.5541 15 7 1.2890 -7.1362 -0.7291 16 6 0.2438 -7.3537 0.1284 17 1 0.1331 -6.7416 1.0112 18 6 -0.6735 -8.3614 -0.1369 19 7 -0.8909 -8.7432 -1.3776 20 14 -1.5991 -9.1751 1.2668 21 1 -2.9151 -8.5099 1.4434 22 1 -1.8087 -10.6117 0.9545 23 1 -0.8096 -9.0507 2.5183 24 6 1.9033 -5.8087 -0.8621 25 1 1.6828 -5.3998 -1.8482 26 6 1.3745 -4.8622 0.2173 27 1 -0.3632 -0.5138 0.8900 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 2.4421 1.6198 -1.0278 31 1 1.6714 2.0648 0.5139 32 1 3.2129 1.1748 0.5138 33 1 3.2520 -1.1517 -0.0001 34 1 3.9500 -2.6088 -0.1117 35 1 3.9292 -3.9107 1.1031 36 1 5.1627 -4.6955 -0.8488 37 1 3.8197 -4.2338 -1.9258 38 1 3.6075 -8.5775 -0.3695 39 1 3.7982 -8.9460 -2.0999 40 1 1.4204 -9.1771 -1.2323 41 1 1.5966 -8.0499 -2.6017 42 1 -1.5322 -9.4470 -1.5630 43 1 1.5387 -5.2992 1.2024 44 1 0.3093 -4.6883 0.0644 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074150796.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:34 Heat of formation + Delta-G solvation = -53.237368 kcal Electronic energy + Delta-G solvation = -25036.192975 eV Core-core repulsion = 21567.991080 eV Total energy + Delta-G solvation = -3468.201896 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.51529 -40.16070 -37.64632 -36.54917 -36.23092 -33.55970 -33.05265 -31.58505 -29.54695 -28.61839 -28.44725 -26.48222 -25.51125 -23.79292 -22.99986 -21.61196 -20.95905 -19.01235 -18.59839 -18.47979 -17.15702 -17.05799 -16.57991 -16.43302 -16.18972 -15.72578 -15.56858 -15.12218 -14.95832 -14.74287 -14.58498 -14.51494 -14.03101 -13.80745 -13.46374 -13.28169 -13.20313 -13.07804 -12.88750 -12.76028 -12.53396 -12.42379 -12.37568 -12.26847 -12.03716 -11.94365 -11.70081 -11.22150 -10.81630 -10.55877 -10.46548 -10.14908 -9.54647 -8.81616 -7.98778 -5.40271 0.44370 1.41340 1.43458 1.54383 1.98454 2.29932 2.45312 2.77152 3.13497 3.41568 3.60744 3.82880 3.86916 3.99310 4.08369 4.16016 4.20372 4.26262 4.38404 4.44721 4.52619 4.57340 4.60100 4.67791 4.71945 4.80050 4.81435 4.87846 4.93922 4.98384 5.03626 5.06928 5.13429 5.22239 5.26848 5.40503 5.44812 5.55901 5.61124 5.70866 6.21979 6.29582 6.51114 6.98309 7.23798 7.68218 8.25752 9.07698 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016358 B = 0.005010 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.246103 B = 5587.548398 C = 6898.800092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.027 4.027 3 C -0.120 4.120 4 C -0.245 4.245 5 C 0.529 3.471 6 O -0.590 6.590 7 N -0.612 5.612 8 C 0.110 3.890 9 C -0.116 4.116 10 C 0.083 3.917 11 H 0.057 0.943 12 O -0.394 6.394 13 C 0.056 3.944 14 C 0.146 3.854 15 N -0.603 5.603 16 C -0.272 4.272 17 H 0.071 0.929 18 C -0.040 4.040 19 N -0.926 5.926 20 Si 0.960 3.040 21 H -0.290 1.290 22 H -0.287 1.287 23 H -0.265 1.265 24 C 0.134 3.866 25 H -0.003 1.003 26 C 0.141 3.859 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.167 0.833 34 H 0.130 0.870 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.112 0.888 40 H 0.059 0.941 41 H -0.003 1.003 42 H 0.252 0.748 43 H 0.070 0.930 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.445 16.231 4.231 22.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.029 4.029 3 C -0.176 4.176 4 C -0.265 4.265 5 C 0.323 3.677 6 O -0.473 6.473 7 N -0.344 5.344 8 C -0.011 4.011 9 C -0.154 4.154 10 C 0.023 3.977 11 H 0.075 0.925 12 O -0.313 6.313 13 C -0.022 4.022 14 C 0.020 3.980 15 N -0.328 5.328 16 C -0.402 4.402 17 H 0.089 0.911 18 C -0.237 4.237 19 N -0.570 5.570 20 Si 0.787 3.213 21 H -0.217 1.217 22 H -0.213 1.213 23 H -0.189 1.189 24 C 0.027 3.973 25 H 0.015 0.985 26 C 0.017 3.983 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.184 0.816 34 H 0.148 0.852 35 H 0.109 0.891 36 H 0.136 0.864 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.130 0.870 40 H 0.077 0.923 41 H 0.015 0.985 42 H 0.061 0.939 43 H 0.088 0.912 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.851 16.137 3.996 21.638 hybrid contribution -1.686 -1.391 0.217 2.196 sum 12.164 14.746 4.213 19.575 Atomic orbital electron populations 1.20995 0.92632 1.01722 1.02174 1.22932 0.96092 0.96126 0.87734 1.21077 1.00437 0.91969 1.04122 1.22554 1.01467 0.89690 1.12775 1.19462 0.87076 0.85563 0.75578 1.90770 1.16483 1.87902 1.52107 1.48244 1.08309 1.05442 1.72417 1.22016 0.77140 1.02026 0.99953 1.21823 1.02312 0.91181 1.00134 1.22518 0.92214 0.90215 0.92718 0.92466 1.87701 1.67776 1.18568 1.57258 1.23132 0.93548 0.84028 1.01486 1.21247 0.91969 0.92233 0.92519 1.44358 1.36414 1.03528 1.48484 1.19334 1.03112 1.17186 1.00541 0.91131 1.25767 0.97663 1.02570 0.97720 1.70313 1.36377 1.31267 1.19031 0.85407 0.78244 0.77689 0.80005 1.21658 1.21275 1.18922 1.21434 0.94118 0.86625 0.95167 0.98544 1.21201 0.96289 0.82717 0.98045 0.92495 0.90343 0.92551 0.88957 0.89878 0.89135 0.81612 0.85179 0.89146 0.86423 0.91853 0.92854 0.86974 0.92268 0.98501 0.93884 0.91173 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 8.33 71.24 0.59 -2.35 16 2 C -0.03 -0.53 6.11 -17.61 -0.11 -0.64 16 3 C -0.12 -1.21 9.98 71.24 0.71 -0.50 16 4 C -0.24 -5.38 8.92 23.43 0.21 -5.17 16 5 C 0.53 17.78 7.59 86.57 0.66 18.44 16 6 O -0.59 -25.38 12.51 -4.07 -0.05 -25.43 16 7 N -0.61 -19.82 2.99 -823.81 -2.46 -22.28 16 8 C 0.11 2.31 6.26 86.28 0.54 2.85 16 9 C -0.12 -2.86 5.83 30.49 0.18 -2.69 16 10 C 0.08 2.92 2.50 30.66 0.08 2.99 16 11 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 12 O -0.39 -14.98 10.49 -148.98 -1.56 -16.54 16 13 C 0.06 2.13 6.99 72.05 0.50 2.64 16 14 C 0.15 7.26 5.53 86.28 0.48 7.73 16 15 N -0.60 -31.69 3.04 -673.88 -2.05 -33.74 16 16 C -0.27 -15.41 8.76 84.04 0.74 -14.67 16 17 H 0.07 3.92 6.38 -2.91 -0.02 3.90 16 18 C -0.04 -2.30 4.65 84.86 0.40 -1.91 16 19 N -0.93 -56.60 11.99 21.65 0.26 -56.34 16 20 Si 0.96 45.70 29.63 68.60 2.03 47.73 16 21 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 24 C 0.13 6.05 3.00 45.05 0.14 6.18 16 25 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 26 C 0.14 5.95 4.50 86.26 0.39 6.34 16 27 H 0.06 1.67 7.38 -2.39 -0.02 1.66 16 28 H 0.08 1.42 7.94 -2.39 -0.02 1.40 16 29 H 0.06 1.74 7.07 -2.39 -0.02 1.72 16 30 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.08 0.68 8.05 -2.39 -0.02 0.67 16 32 H 0.09 0.60 8.07 -2.39 -0.02 0.58 16 33 H 0.17 2.22 5.91 -2.91 -0.02 2.21 16 34 H 0.13 1.71 5.36 -2.39 -0.01 1.69 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 39 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 40 H 0.06 3.16 6.63 -2.39 -0.02 3.15 16 41 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 42 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 43 H 0.07 2.91 7.42 -2.38 -0.02 2.89 16 44 H 0.06 2.85 6.76 -2.38 -0.02 2.83 16 Total: -1.00 -77.23 339.47 2.65 -74.58 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.99 Total: 12.79 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: 5.49 Total: 19.24 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -4.25 Total: -112.36 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -1.61 Total: -41.97 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -77.23 2.65 -74.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074150796.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.344 kcal (2) G-P(sol) polarization free energy of solvation -77.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds