Wall clock time and date at job start Tue Mar 31 2020 03:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.63810 * 2 1 4 4 C 1.54316 * 110.72471 * 236.86020 * 2 1 3 5 5 N 1.47020 * 107.27143 * 219.44284 * 4 2 1 6 6 C 1.36944 * 125.64926 * 178.90195 * 5 4 2 7 7 H 1.08001 * 119.99683 * 341.52731 * 6 5 4 8 8 C 1.38806 * 119.99925 * 161.51561 * 6 5 4 9 9 N 1.31618 * 119.99870 * 157.63689 * 8 6 5 10 10 Si 1.86800 * 120.00397 * 337.63705 * 8 6 5 11 11 H 1.48500 * 109.46817 * 84.53339 * 10 8 6 12 12 H 1.48497 * 109.47435 * 204.53261 * 10 8 6 13 13 H 1.48497 * 109.47248 * 324.53781 * 10 8 6 14 14 C 1.47421 * 108.70543 * 358.93646 * 5 4 2 15 15 C 1.54914 * 104.83075 * 24.13098 * 14 5 4 16 16 H 1.09000 * 111.00093 * 81.06345 * 15 14 5 17 17 N 1.46504 * 111.00497 * 204.91659 * 15 14 5 18 18 C 1.34774 * 119.99911 * 267.19768 * 17 15 14 19 19 O 1.21283 * 119.99834 * 0.02562 * 18 17 15 20 20 C 1.50692 * 119.99929 * 180.02562 * 18 17 15 21 21 H 1.08996 * 110.67016 * 61.75807 * 20 18 17 22 22 C 1.55002 * 110.74840 * 298.54005 * 20 18 17 23 23 C 1.55817 * 102.79063 * 241.67596 * 22 20 18 24 24 H 1.09004 * 115.38631 * 158.83548 * 23 22 20 25 25 C 1.55814 * 105.32946 * 287.31066 * 23 22 20 26 26 C 1.55004 * 102.78921 * 72.68852 * 25 23 22 27 27 C 1.55821 * 102.78635 * 0.02562 * 26 25 23 28 28 H 1.08995 * 115.38725 * 158.83078 * 27 26 25 29 29 O 1.46535 * 101.24191 * 32.42059 * 23 22 20 30 30 H 1.09007 * 109.46409 * 181.68824 * 1 2 3 31 31 H 1.08993 * 109.47358 * 61.68799 * 1 2 3 32 32 H 1.09000 * 109.47538 * 301.68276 * 1 2 3 33 33 H 1.09003 * 109.87840 * 338.85611 * 4 2 1 34 34 H 1.09000 * 109.88860 * 100.02058 * 4 2 1 35 35 H 0.97006 * 120.00324 * 180.02562 * 9 8 6 36 36 H 1.09001 * 110.36685 * 142.96541 * 14 5 4 37 37 H 1.08997 * 110.36870 * 265.29291 * 14 5 4 38 38 H 0.96995 * 119.99863 * 87.19651 * 17 15 14 39 39 H 1.08995 * 110.74898 * 0.02562 * 22 20 18 40 40 H 1.09002 * 110.74849 * 123.35344 * 22 20 18 41 41 H 1.08999 * 110.74864 * 191.01372 * 25 23 22 42 42 H 1.09003 * 110.74883 * 314.18342 * 25 23 22 43 43 H 1.09000 * 110.74866 * 118.32677 * 26 25 23 44 44 H 1.08997 * 110.74951 * 241.49474 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0761 -0.7890 -1.2085 5 7 3.2446 -1.5493 -0.7415 6 6 4.0036 -2.3953 -1.5054 7 1 3.6111 -2.7833 -2.4337 8 6 5.2775 -2.7539 -1.0866 9 7 5.8321 -3.8588 -1.5384 10 14 6.2048 -1.6686 0.1183 11 1 5.7970 -2.0081 1.5052 12 1 7.6647 -1.8914 -0.0371 13 1 5.8897 -0.2435 -0.1555 14 6 3.4634 -1.2508 0.6855 15 6 2.0790 -0.7974 1.2125 16 1 1.4453 -1.6560 1.4347 17 7 2.2214 0.0657 2.3877 18 6 2.1873 -0.4688 3.6245 19 8 2.0392 -1.6644 3.7645 20 6 2.3332 0.4190 4.8333 21 1 1.5206 1.1441 4.8784 22 6 3.7080 1.1348 4.8262 23 6 4.3801 0.6038 6.1278 24 1 5.4671 0.6796 6.1569 25 6 3.6297 1.3101 7.2965 26 6 2.2548 0.5943 7.3037 27 6 2.3937 -0.4310 6.1386 28 1 1.7086 -1.2778 6.1772 29 8 3.8222 -0.7489 6.2060 30 1 -0.3632 -1.0273 0.0303 31 1 -0.3634 0.4874 -0.9047 32 1 -0.3634 0.5397 0.8745 33 1 1.3130 -1.4731 -1.5800 34 1 2.3741 -0.0990 -1.9979 35 1 6.7222 -4.1096 -1.2454 36 1 3.7961 -2.1445 1.2133 37 1 4.1931 -0.4490 0.7978 38 1 2.3402 1.0218 2.2757 39 1 4.2873 0.8496 3.9480 40 1 3.5805 2.2164 4.8710 41 1 4.1513 1.1539 8.2407 42 1 3.5129 2.3746 7.0930 43 1 2.0914 0.0815 8.2515 44 1 1.4500 1.3021 7.1056 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080478320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:16 Heat of formation + Delta-G solvation = -71.099182 kcal Electronic energy + Delta-G solvation = -24977.827562 eV Core-core repulsion = 21508.851120 eV Total energy + Delta-G solvation = -3468.976442 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.15449 -40.62352 -39.15300 -35.76264 -34.50202 -33.38689 -32.85343 -31.89909 -30.63360 -29.55297 -27.81037 -25.48298 -24.13080 -22.91524 -22.38365 -21.78171 -21.34646 -20.58935 -19.01237 -18.50177 -17.80771 -17.61766 -16.97682 -16.44586 -16.24593 -15.86445 -15.46460 -15.25867 -15.20593 -14.79385 -14.51852 -14.24376 -14.02366 -13.65072 -13.57816 -13.27466 -13.15640 -12.87604 -12.79710 -12.57065 -12.46794 -12.32808 -12.17020 -12.05357 -11.89372 -11.86620 -11.65632 -11.55297 -11.45501 -10.96333 -10.92314 -10.73659 -10.12271 -9.13550 -8.26882 -5.52738 1.23577 1.24119 1.34773 1.56807 2.03697 2.33341 2.85853 2.97101 3.28756 3.39112 3.49810 3.54778 3.70992 3.79438 3.92590 3.96028 3.99743 4.11145 4.22212 4.26373 4.39156 4.44676 4.48920 4.53559 4.60384 4.70857 4.82348 4.85032 4.93128 4.97044 4.99479 5.01386 5.07160 5.08962 5.16023 5.20986 5.24609 5.37041 5.50636 5.61825 5.66053 6.02530 6.52701 6.67415 7.24260 7.45699 8.01608 8.92926 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016937 B = 0.005147 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.771232 B = 5438.564786 C = 6525.231322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 H 0.109 0.891 4 C 0.131 3.869 5 N -0.626 5.626 6 C -0.236 4.236 7 H 0.067 0.933 8 C -0.035 4.035 9 N -0.953 5.953 10 Si 0.943 3.057 11 H -0.295 1.295 12 H -0.302 1.302 13 H -0.257 1.257 14 C 0.104 3.896 15 C 0.147 3.853 16 H 0.078 0.922 17 N -0.703 5.703 18 C 0.513 3.487 19 O -0.586 6.586 20 C -0.129 4.129 21 H 0.156 0.844 22 C -0.138 4.138 23 C 0.043 3.957 24 H 0.134 0.866 25 C -0.137 4.137 26 C -0.138 4.138 27 C 0.071 3.929 28 H 0.115 0.885 29 O -0.414 6.414 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.037 0.963 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.014 0.986 37 H 0.029 0.971 38 H 0.418 0.582 39 H 0.055 0.945 40 H 0.132 0.868 41 H 0.074 0.926 42 H 0.108 0.892 43 H 0.076 0.924 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.202 21.105 17.533 29.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.110 4.110 3 H 0.127 0.873 4 C 0.007 3.993 5 N -0.353 5.353 6 C -0.365 4.365 7 H 0.085 0.915 8 C -0.230 4.230 9 N -0.599 5.599 10 Si 0.772 3.228 11 H -0.222 1.222 12 H -0.230 1.230 13 H -0.182 1.182 14 C -0.022 4.022 15 C 0.040 3.960 16 H 0.096 0.904 17 N -0.355 5.355 18 C 0.301 3.699 19 O -0.465 6.465 20 C -0.150 4.150 21 H 0.173 0.827 22 C -0.175 4.175 23 C -0.014 4.014 24 H 0.151 0.849 25 C -0.175 4.175 26 C -0.175 4.175 27 C 0.014 3.986 28 H 0.133 0.867 29 O -0.334 6.334 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.032 0.968 37 H 0.046 0.954 38 H 0.256 0.744 39 H 0.074 0.926 40 H 0.150 0.850 41 H 0.093 0.907 42 H 0.127 0.873 43 H 0.094 0.906 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.038 19.913 17.567 28.757 hybrid contribution 1.203 -0.304 -0.076 1.243 sum -9.835 19.609 17.491 28.057 Atomic orbital electron populations 1.21699 0.91516 1.02038 1.03499 1.22422 0.97925 0.99314 0.91315 0.87304 1.21708 0.88104 0.93356 0.96170 1.44764 1.33366 1.51786 1.05407 1.18652 0.95154 1.18276 1.04369 0.91513 1.25598 0.98048 0.98435 1.00870 1.69959 1.17133 1.23208 1.49638 0.85993 0.77088 0.81018 0.78669 1.22206 1.22982 1.18188 1.22243 0.97421 0.97049 0.85493 1.21920 0.94628 0.94050 0.85354 0.90360 1.45736 1.73719 1.11676 1.04380 1.21277 0.74441 0.88710 0.85433 1.90717 1.50562 1.18279 1.86948 1.23186 1.02222 0.98082 0.91534 0.82678 1.23377 0.93070 1.02706 0.98372 1.25012 0.99826 0.81146 0.95431 0.84870 1.23247 0.95035 1.01039 0.98137 1.23246 0.98948 0.97670 0.97656 1.24633 0.83370 0.97064 0.93571 0.86716 1.90133 1.20033 1.28531 1.94666 0.93711 0.90248 0.90536 0.94524 0.93742 0.92849 0.96812 0.95356 0.74378 0.92619 0.84969 0.90687 0.87327 0.90561 0.87391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.13 71.98 0.66 -2.01 16 2 C -0.09 -2.47 3.19 -9.61 -0.03 -2.50 16 3 H 0.11 2.35 8.01 -2.39 -0.02 2.33 16 4 C 0.13 4.94 6.84 86.73 0.59 5.53 16 5 N -0.63 -31.52 3.21 -692.01 -2.22 -33.74 16 6 C -0.24 -14.28 10.57 84.03 0.89 -13.39 16 7 H 0.07 4.29 8.06 -2.91 -0.02 4.27 16 8 C -0.03 -2.17 5.43 84.86 0.46 -1.71 16 9 N -0.95 -63.32 13.97 21.65 0.30 -63.02 16 10 Si 0.94 50.59 24.27 68.60 1.66 52.25 16 11 H -0.29 -16.20 6.49 99.48 0.65 -15.55 16 12 H -0.30 -16.02 7.11 99.48 0.71 -15.31 16 13 H -0.26 -12.73 6.66 99.48 0.66 -12.07 16 14 C 0.10 4.86 4.39 86.86 0.38 5.24 16 15 C 0.15 5.10 2.87 46.38 0.13 5.23 16 16 H 0.08 3.13 7.44 -2.39 -0.02 3.11 16 17 N -0.70 -18.52 5.11 -435.95 -2.23 -20.75 16 18 C 0.51 15.28 7.01 87.65 0.61 15.89 16 19 O -0.59 -24.44 15.54 -3.04 -0.05 -24.49 16 20 C -0.13 -2.42 2.89 -9.86 -0.03 -2.45 16 21 H 0.16 1.46 7.82 -2.39 -0.02 1.44 16 22 C -0.14 -2.23 6.11 32.25 0.20 -2.03 16 23 C 0.04 0.80 5.71 32.54 0.19 0.99 16 24 H 0.13 2.27 8.14 -2.38 -0.02 2.25 16 25 C -0.14 -1.56 6.52 32.25 0.21 -1.35 16 26 C -0.14 -1.74 6.52 32.26 0.21 -1.53 16 27 C 0.07 1.60 4.63 32.57 0.15 1.75 16 28 H 0.12 2.98 7.74 -2.39 -0.02 2.96 16 29 O -0.41 -12.27 11.64 -148.98 -1.73 -14.00 16 30 H 0.04 1.06 8.13 -2.38 -0.02 1.04 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.04 1.39 7.82 -2.39 -0.02 1.37 16 34 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 35 H 0.26 16.60 8.31 -92.70 -0.77 15.83 16 36 H 0.01 0.76 6.63 -2.39 -0.02 0.74 16 37 H 0.03 1.32 5.58 -2.39 -0.01 1.30 16 38 H 0.42 7.29 8.57 -92.71 -0.79 6.49 16 39 H 0.05 1.21 7.73 -2.39 -0.02 1.19 16 40 H 0.13 0.93 7.81 -2.39 -0.02 0.91 16 41 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.11 0.58 7.81 -2.39 -0.02 0.56 16 43 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 44 H 0.11 0.72 7.82 -2.39 -0.02 0.70 16 Total: -1.00 -87.06 339.91 0.46 -86.60 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 0.09 Total: 9.48 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 4.62 Total: 7.66 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -4.14 Total: -117.51 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -1.78 Total: -38.49 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 1.66 Total: 52.25 kcal Total: -87.06 0.46 -86.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080478320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.504 kcal (2) G-P(sol) polarization free energy of solvation -87.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds