Wall clock time and date at job start Tue Mar 31 2020 03:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00014 * 2 1 4 4 H 1.08996 * 110.91899 * 26.09889 * 3 2 1 5 5 C 1.54910 * 111.00471 * 262.19617 * 3 2 1 6 6 N 1.47418 * 104.83460 * 204.91453 * 5 3 2 7 7 C 1.36941 * 125.65080 * 204.09330 * 6 5 3 8 8 H 1.07996 * 120.00105 * 180.02562 * 7 6 5 9 9 C 1.38816 * 119.99698 * 0.04220 * 7 6 5 10 10 N 1.31616 * 120.00199 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99582 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47248 * 90.00140 * 11 9 7 13 13 H 1.48503 * 109.47086 * 209.99964 * 11 9 7 14 14 H 1.48500 * 109.47542 * 329.99826 * 11 9 7 15 15 C 1.47020 * 108.70427 * 24.13044 * 6 5 3 16 16 C 1.54323 * 107.26994 * 358.94127 * 15 6 5 17 17 H 1.08992 * 110.72427 * 96.34810 * 16 15 6 18 18 N 1.46506 * 110.72020 * 219.44829 * 16 15 6 19 19 C 1.34775 * 119.99407 * 273.54231 * 18 16 15 20 20 O 1.21284 * 120.00450 * 359.97438 * 19 18 16 21 21 C 1.50706 * 119.99973 * 180.02562 * 19 18 16 22 22 C 1.52995 * 115.55227 * 179.91684 * 21 19 18 23 23 C 1.53002 * 117.50256 * 34.19877 * 22 21 19 24 24 C 1.52997 * 60.00221 * 252.51433 * 23 22 21 25 25 C 1.53001 * 117.49756 * 34.20370 * 21 19 18 26 26 C 1.52999 * 59.99986 * 252.51526 * 25 21 19 27 27 H 1.09001 * 109.47369 * 59.99992 * 1 2 3 28 28 H 1.09004 * 109.46817 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47099 * 300.00002 * 1 2 3 30 30 H 1.09006 * 110.36463 * 86.07890 * 5 3 2 31 31 H 1.09003 * 110.45828 * 323.80450 * 5 3 2 32 32 H 0.96997 * 119.99758 * 179.97438 * 10 9 7 33 33 H 1.09003 * 109.88527 * 239.52422 * 15 6 5 34 34 H 1.08997 * 110.01251 * 118.42627 * 15 6 5 35 35 H 0.96994 * 120.00352 * 93.54744 * 18 16 15 36 36 H 1.09001 * 115.55256 * 179.91524 * 22 21 19 37 37 H 1.08999 * 117.49490 * 0.02562 * 23 22 21 38 38 H 1.08995 * 117.49630 * 145.02214 * 23 22 21 39 39 H 1.08997 * 117.49845 * 252.50973 * 24 23 22 40 40 H 1.09002 * 117.50032 * 107.48547 * 24 23 22 41 41 H 1.09004 * 117.49834 * 0.02562 * 25 21 19 42 42 H 1.08997 * 117.49999 * 145.02096 * 25 21 19 43 43 H 1.09004 * 117.50109 * 252.51157 * 26 25 21 44 44 H 1.08998 * 117.52032 * 107.48340 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3332 2.0328 0.4479 5 6 2.4154 1.7328 -1.4328 6 7 3.4908 2.7229 -1.2414 7 6 3.8429 3.7011 -2.1326 8 1 4.6492 4.3804 -1.8982 9 6 3.1633 3.8199 -3.3372 10 7 2.1809 2.9920 -3.6229 11 14 3.6442 5.1539 -4.5531 12 1 4.6834 4.6311 -5.4762 13 1 2.4501 5.5654 -5.3342 14 1 4.1813 6.3257 -3.8158 15 6 4.1233 2.4855 0.0644 16 6 3.3825 1.3033 0.7242 17 1 3.9136 0.3682 0.5470 18 7 3.2108 1.5357 2.1604 19 6 4.1856 1.1822 3.0214 20 8 5.2046 0.6713 2.6073 21 6 4.0089 1.4207 4.4989 22 6 5.1769 0.9792 5.3830 23 6 6.5884 1.1136 4.8080 24 6 5.9520 -0.2696 4.9578 25 6 2.5971 1.2844 5.0727 26 6 3.2326 2.6683 4.9252 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.5685 2.1873 -1.9469 31 1 2.7847 0.8757 -1.9960 32 1 1.7058 3.0752 -4.4645 33 1 4.0315 3.3748 0.6880 34 1 5.1753 2.2346 -0.0707 35 1 2.3957 1.9439 2.4917 36 1 5.0498 1.1530 6.4515 37 1 6.6849 1.5170 3.8000 38 1 7.3901 1.3762 5.4982 39 1 6.3350 -0.9171 5.7466 40 1 5.6297 -0.7766 4.0482 41 1 1.7962 1.0218 4.3815 42 1 2.5002 0.8798 6.0801 43 1 3.5538 3.1744 5.8357 44 1 2.8500 3.3168 4.1370 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081827947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:08 Heat of formation + Delta-G solvation = 9.741051 kcal Electronic energy + Delta-G solvation = -24697.182124 eV Core-core repulsion = 21231.711178 eV Total energy + Delta-G solvation = -3465.470946 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.50580 -38.53311 -36.98913 -35.99728 -35.60604 -33.69500 -31.66653 -28.83570 -27.22749 -26.10779 -25.01380 -24.08766 -22.85387 -22.10592 -22.00285 -20.69648 -20.03518 -19.34613 -17.23199 -16.72424 -16.51792 -15.88651 -15.30117 -15.12674 -14.62408 -14.59599 -14.33094 -14.19582 -13.76041 -13.32589 -13.17727 -12.83222 -12.37344 -12.23250 -11.96234 -11.86806 -11.56756 -11.46042 -11.29259 -11.11657 -11.04025 -10.94388 -10.84209 -10.74765 -10.20314 -10.13362 -9.92956 -9.83542 -9.49371 -9.46326 -9.04853 -8.71784 -8.66476 -6.91454 -5.71059 -3.14009 2.54745 3.25242 3.38315 3.43337 3.44978 3.59520 4.09540 4.12180 4.28874 4.41442 4.48918 4.79357 4.88524 5.08456 5.20180 5.21488 5.29591 5.37837 5.40218 5.46760 5.58100 5.62833 5.65800 5.67314 5.71299 5.81331 5.82124 5.82986 5.91924 5.95884 6.06539 6.19561 6.31180 6.48061 6.52411 6.68148 6.88723 7.23623 7.54091 7.67311 7.71439 7.78111 8.25045 8.42086 9.14649 9.75013 10.37479 11.32819 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018257 B = 0.004270 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.285309 B = 6555.947248 C = 7385.243421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.055 3.945 4 H 0.066 0.934 5 C 0.142 3.858 6 N -0.600 5.600 7 C -0.223 4.223 8 H 0.080 0.920 9 C -0.010 4.010 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.132 3.868 16 C 0.137 3.863 17 H 0.101 0.899 18 N -0.715 5.715 19 C 0.548 3.452 20 O -0.528 6.528 21 C -0.122 4.122 22 C -0.118 4.118 23 C -0.167 4.167 24 C -0.168 4.168 25 C -0.156 4.156 26 C -0.156 4.156 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.033 0.967 30 H 0.112 0.888 31 H 0.027 0.973 32 H 0.253 0.747 33 H 0.029 0.971 34 H 0.033 0.967 35 H 0.394 0.606 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.399 -3.562 18.000 18.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.298 6.298 3 C -0.004 4.004 4 H 0.084 0.916 5 C 0.016 3.984 6 N -0.328 5.328 7 C -0.351 4.351 8 H 0.098 0.902 9 C -0.205 4.205 10 N -0.572 5.572 11 Si 0.747 3.253 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.206 1.206 15 C 0.004 3.996 16 C 0.033 3.967 17 H 0.119 0.881 18 N -0.365 5.365 19 C 0.334 3.666 20 O -0.405 6.405 21 C -0.125 4.125 22 C -0.136 4.136 23 C -0.204 4.204 24 C -0.204 4.204 25 C -0.194 4.194 26 C -0.193 4.193 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.051 0.949 30 H 0.130 0.870 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.229 0.771 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.127 0.873 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.609 -4.026 17.472 18.002 hybrid contribution -0.364 1.058 -0.434 1.200 sum -1.972 -2.968 17.039 17.407 Atomic orbital electron populations 1.22710 0.81634 1.01962 0.99889 1.87855 1.19177 1.27717 1.95078 1.24033 0.92571 0.83719 1.00126 0.91583 1.22287 0.94656 0.92050 0.89383 1.44303 1.37290 1.35442 1.15770 1.19098 1.13868 1.06117 0.95998 0.90211 1.24798 0.98501 0.99367 0.97851 1.69750 1.24593 1.38703 1.24107 0.86034 0.77337 0.80905 0.80993 1.21504 1.21621 1.20642 1.21591 0.95867 0.93995 0.88104 1.22166 0.96753 1.00111 0.77713 0.88105 1.45987 1.20073 1.63200 1.07246 1.19392 0.83231 0.77726 0.86240 1.90651 1.27767 1.43157 1.78951 1.20987 0.94161 1.05060 0.92335 1.21356 0.90868 1.04447 0.96948 1.23050 0.93638 1.00600 1.03093 1.23035 1.03318 0.90799 1.03276 1.23086 0.93538 0.99868 1.02883 1.23106 1.02015 0.90412 1.03813 0.93508 0.90277 0.94870 0.87001 0.95527 0.93603 0.95359 0.94856 0.77138 0.87528 0.87174 0.89741 0.89771 0.87307 0.88118 0.87671 0.87619 0.87976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.85 101.05 1.10 1.58 16 2 O -0.38 -6.90 10.51 -35.23 -0.37 -7.27 16 3 C 0.05 1.05 3.15 -24.58 -0.08 0.97 16 4 H 0.07 1.17 7.69 -51.93 -0.40 0.77 16 5 C 0.14 3.45 5.62 -2.53 -0.01 3.43 16 6 N -0.60 -15.42 3.39 -170.07 -0.58 -16.00 16 7 C -0.22 -6.19 10.27 -15.06 -0.15 -6.34 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 10 N -0.92 -26.48 10.09 55.49 0.56 -25.92 16 11 Si 0.92 21.89 29.55 -169.99 -5.02 16.87 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 C 0.13 2.87 6.99 -3.07 -0.02 2.85 16 16 C 0.14 2.59 2.97 -66.09 -0.20 2.39 16 17 H 0.10 2.11 7.69 -51.93 -0.40 1.71 16 18 N -0.71 -10.77 4.93 -52.03 -0.26 -11.03 16 19 C 0.55 8.41 7.23 -10.98 -0.08 8.34 16 20 O -0.53 -9.80 11.55 5.55 0.06 -9.74 16 21 C -0.12 -1.42 2.47 -155.66 -0.38 -1.81 16 22 C -0.12 -1.33 5.85 -90.62 -0.53 -1.86 16 23 C -0.17 -2.11 9.66 -26.73 -0.26 -2.37 16 24 C -0.17 -2.09 9.66 -26.73 -0.26 -2.34 16 25 C -0.16 -1.37 9.59 -26.73 -0.26 -1.63 16 26 C -0.16 -1.41 9.59 -26.73 -0.26 -1.67 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 30 H 0.11 2.99 5.87 -51.93 -0.31 2.68 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.03 0.61 8.03 -51.93 -0.42 0.19 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.39 4.93 6.70 -40.82 -0.27 4.66 16 36 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.11 1.70 6.27 -51.93 -0.33 1.38 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.11 1.64 6.29 -51.93 -0.33 1.31 16 41 H 0.10 0.86 7.54 -51.93 -0.39 0.47 16 42 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.10 0.92 7.55 -51.93 -0.39 0.53 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -31.27 351.93 -8.79 -40.06 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -7.00 Total: 6.55 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -1.49 Total: 1.17 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.27 Total: -52.95 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.31 Total: -17.01 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.27 -8.79 -40.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081827947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.802 kcal (2) G-P(sol) polarization free energy of solvation -31.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds