Wall clock time and date at job start Tue Mar 31 2020 03:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00014 * 2 1 4 4 H 1.08996 * 110.91899 * 26.09889 * 3 2 1 5 5 C 1.54910 * 111.00471 * 262.19617 * 3 2 1 6 6 N 1.47418 * 104.83460 * 204.91453 * 5 3 2 7 7 C 1.36941 * 125.65080 * 204.09330 * 6 5 3 8 8 H 1.07996 * 120.00105 * 180.02562 * 7 6 5 9 9 C 1.38816 * 119.99698 * 0.04220 * 7 6 5 10 10 N 1.31616 * 120.00199 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99582 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47248 * 90.00140 * 11 9 7 13 13 H 1.48503 * 109.47086 * 209.99964 * 11 9 7 14 14 H 1.48500 * 109.47542 * 329.99826 * 11 9 7 15 15 C 1.47020 * 108.70427 * 24.13044 * 6 5 3 16 16 C 1.54323 * 107.26994 * 358.94127 * 15 6 5 17 17 H 1.08992 * 110.72427 * 96.34810 * 16 15 6 18 18 N 1.46506 * 110.72020 * 219.44829 * 16 15 6 19 19 C 1.34775 * 119.99407 * 273.54231 * 18 16 15 20 20 O 1.21284 * 120.00450 * 359.97438 * 19 18 16 21 21 C 1.50706 * 119.99973 * 180.02562 * 19 18 16 22 22 C 1.52995 * 115.55227 * 179.91684 * 21 19 18 23 23 C 1.53002 * 117.50256 * 34.19877 * 22 21 19 24 24 C 1.52997 * 60.00221 * 252.51433 * 23 22 21 25 25 C 1.53001 * 117.49756 * 34.20370 * 21 19 18 26 26 C 1.52999 * 59.99986 * 252.51526 * 25 21 19 27 27 H 1.09001 * 109.47369 * 59.99992 * 1 2 3 28 28 H 1.09004 * 109.46817 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47099 * 300.00002 * 1 2 3 30 30 H 1.09006 * 110.36463 * 86.07890 * 5 3 2 31 31 H 1.09003 * 110.45828 * 323.80450 * 5 3 2 32 32 H 0.96997 * 119.99758 * 179.97438 * 10 9 7 33 33 H 1.09003 * 109.88527 * 239.52422 * 15 6 5 34 34 H 1.08997 * 110.01251 * 118.42627 * 15 6 5 35 35 H 0.96994 * 120.00352 * 93.54744 * 18 16 15 36 36 H 1.09001 * 115.55256 * 179.91524 * 22 21 19 37 37 H 1.08999 * 117.49490 * 0.02562 * 23 22 21 38 38 H 1.08995 * 117.49630 * 145.02214 * 23 22 21 39 39 H 1.08997 * 117.49845 * 252.50973 * 24 23 22 40 40 H 1.09002 * 117.50032 * 107.48547 * 24 23 22 41 41 H 1.09004 * 117.49834 * 0.02562 * 25 21 19 42 42 H 1.08997 * 117.49999 * 145.02096 * 25 21 19 43 43 H 1.09004 * 117.50109 * 252.51157 * 26 25 21 44 44 H 1.08998 * 117.52032 * 107.48340 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3332 2.0328 0.4479 5 6 2.4154 1.7328 -1.4328 6 7 3.4908 2.7229 -1.2414 7 6 3.8429 3.7011 -2.1326 8 1 4.6492 4.3804 -1.8982 9 6 3.1633 3.8199 -3.3372 10 7 2.1809 2.9920 -3.6229 11 14 3.6442 5.1539 -4.5531 12 1 4.6834 4.6311 -5.4762 13 1 2.4501 5.5654 -5.3342 14 1 4.1813 6.3257 -3.8158 15 6 4.1233 2.4855 0.0644 16 6 3.3825 1.3033 0.7242 17 1 3.9136 0.3682 0.5470 18 7 3.2108 1.5357 2.1604 19 6 4.1856 1.1822 3.0214 20 8 5.2046 0.6713 2.6073 21 6 4.0089 1.4207 4.4989 22 6 5.1769 0.9792 5.3830 23 6 6.5884 1.1136 4.8080 24 6 5.9520 -0.2696 4.9578 25 6 2.5971 1.2844 5.0727 26 6 3.2326 2.6683 4.9252 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.5685 2.1873 -1.9469 31 1 2.7847 0.8757 -1.9960 32 1 1.7058 3.0752 -4.4645 33 1 4.0315 3.3748 0.6880 34 1 5.1753 2.2346 -0.0707 35 1 2.3957 1.9439 2.4917 36 1 5.0498 1.1530 6.4515 37 1 6.6849 1.5170 3.8000 38 1 7.3901 1.3762 5.4982 39 1 6.3350 -0.9171 5.7466 40 1 5.6297 -0.7766 4.0482 41 1 1.7962 1.0218 4.3815 42 1 2.5002 0.8798 6.0801 43 1 3.5538 3.1744 5.8357 44 1 2.8500 3.3168 4.1370 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081827947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:07 Heat of formation + Delta-G solvation = -10.716837 kcal Electronic energy + Delta-G solvation = -24698.069245 eV Core-core repulsion = 21231.711178 eV Total energy + Delta-G solvation = -3466.358067 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.65595 -40.02642 -38.11415 -37.49760 -36.71783 -35.19951 -33.51851 -30.60278 -28.94555 -27.53251 -26.42094 -25.44926 -23.60118 -23.31869 -22.87671 -22.41995 -21.65044 -20.58984 -19.08075 -18.06365 -17.76448 -17.25799 -16.86424 -16.26163 -16.03982 -15.88349 -15.78494 -15.51095 -15.12558 -14.84968 -14.52958 -14.15466 -13.93676 -13.77165 -13.28647 -13.20189 -13.08069 -12.75484 -12.57902 -12.55907 -12.39141 -12.30669 -12.11176 -12.03629 -11.92200 -11.71615 -11.61385 -11.08992 -10.82622 -10.69934 -10.46267 -10.35323 -10.10322 -9.00073 -7.82925 -5.30485 1.45609 1.47103 1.48653 1.57193 2.00100 2.43379 2.69108 2.72175 3.28016 3.29469 3.46253 3.50789 3.57037 3.75933 3.91465 3.96388 4.02406 4.06515 4.25932 4.32323 4.38754 4.39541 4.45217 4.58936 4.64875 4.75636 4.80092 4.86889 4.87380 4.88675 4.89041 5.02636 5.07730 5.20708 5.26021 5.36289 5.42121 5.46322 5.47622 5.65714 6.16470 6.28588 6.50912 7.02377 7.23714 7.66648 8.29197 9.18583 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018257 B = 0.004270 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.285309 B = 6555.947248 C = 7385.243421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.079 3.921 4 H 0.091 0.909 5 C 0.147 3.853 6 N -0.618 5.618 7 C -0.246 4.246 8 H 0.081 0.919 9 C -0.059 4.059 10 N -0.947 5.947 11 Si 0.984 3.016 12 H -0.289 1.289 13 H -0.288 1.288 14 H -0.268 1.268 15 C 0.134 3.866 16 C 0.156 3.844 17 H 0.075 0.925 18 N -0.704 5.704 19 C 0.540 3.460 20 O -0.568 6.568 21 C -0.151 4.151 22 C -0.098 4.098 23 C -0.181 4.181 24 C -0.177 4.177 25 C -0.135 4.135 26 C -0.141 4.141 27 H 0.036 0.964 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.089 0.911 31 H -0.013 1.013 32 H 0.250 0.750 33 H 0.039 0.961 34 H 0.012 0.988 35 H 0.411 0.589 36 H 0.141 0.859 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.818 -2.643 20.943 21.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.314 6.314 3 C 0.020 3.980 4 H 0.108 0.892 5 C 0.021 3.979 6 N -0.346 5.346 7 C -0.374 4.374 8 H 0.099 0.901 9 C -0.252 4.252 10 N -0.596 5.596 11 Si 0.812 3.188 12 H -0.216 1.216 13 H -0.214 1.214 14 H -0.193 1.193 15 C 0.007 3.993 16 C 0.049 3.951 17 H 0.093 0.907 18 N -0.356 5.356 19 C 0.329 3.671 20 O -0.447 6.447 21 C -0.154 4.154 22 C -0.116 4.116 23 C -0.218 4.218 24 C -0.214 4.214 25 C -0.172 4.172 26 C -0.178 4.178 27 H 0.054 0.946 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.005 0.995 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.030 0.970 35 H 0.248 0.752 36 H 0.159 0.841 37 H 0.092 0.908 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.093 0.907 41 H 0.123 0.877 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.052 -3.104 20.459 20.917 hybrid contribution 0.089 0.713 -1.376 1.553 sum -2.962 -2.391 19.082 19.458 Atomic orbital electron populations 1.23006 0.79179 1.03984 1.00800 1.87848 1.21861 1.26780 1.94954 1.23590 0.93074 0.84916 0.96465 0.89166 1.22053 0.93269 0.90203 0.92399 1.44548 1.38071 1.35202 1.16740 1.19449 1.14190 1.06802 0.96998 0.90090 1.25646 0.98545 1.01572 0.99462 1.69987 1.25311 1.40024 1.24234 0.85003 0.76820 0.78547 0.78463 1.21631 1.21387 1.19259 1.21632 0.94923 0.95590 0.87120 1.21606 0.95911 0.97525 0.80033 0.90663 1.45757 1.21028 1.63461 1.05318 1.20200 0.82297 0.76540 0.88031 1.90650 1.29361 1.44745 1.79986 1.20956 0.96419 1.08676 0.89387 1.21548 0.89540 1.02207 0.98344 1.22964 0.95933 1.00970 1.01915 1.22960 1.04487 0.91185 1.02722 1.23264 0.90927 0.99197 1.03821 1.23266 1.00079 0.90078 1.04407 0.94564 0.87829 0.91902 0.89367 0.99465 0.93979 0.94307 0.97012 0.75213 0.84110 0.90820 0.87721 0.87580 0.90663 0.87680 0.85240 0.85392 0.88000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.85 113.37 1.23 1.91 16 2 O -0.40 -14.18 10.51 -148.98 -1.57 -15.75 16 3 C 0.08 3.03 3.15 31.99 0.10 3.13 16 4 H 0.09 3.03 7.69 -2.39 -0.02 3.01 16 5 C 0.15 7.43 5.62 86.86 0.49 7.91 16 6 N -0.62 -32.90 3.39 -691.99 -2.35 -35.25 16 7 C -0.25 -14.02 10.27 84.03 0.86 -13.16 16 8 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 9 C -0.06 -3.36 5.49 84.86 0.47 -2.89 16 10 N -0.95 -55.86 10.09 21.65 0.22 -55.64 16 11 Si 0.98 45.50 29.55 68.60 2.03 47.52 16 12 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 13 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 14 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 15 C 0.13 6.06 6.99 86.73 0.61 6.67 16 16 C 0.16 6.00 2.97 46.18 0.14 6.13 16 17 H 0.08 3.31 7.69 -2.39 -0.02 3.30 16 18 N -0.70 -20.66 4.93 -436.90 -2.15 -22.81 16 19 C 0.54 16.47 7.23 87.66 0.63 17.10 16 20 O -0.57 -22.08 11.55 -3.04 -0.04 -22.11 16 21 C -0.15 -3.15 2.47 -52.93 -0.13 -3.28 16 22 C -0.10 -1.98 5.85 -10.79 -0.06 -2.04 16 23 C -0.18 -4.51 9.66 30.59 0.30 -4.21 16 24 C -0.18 -4.30 9.66 30.59 0.30 -4.00 16 25 C -0.14 -1.78 9.59 30.59 0.29 -1.49 16 26 C -0.14 -1.98 9.59 30.59 0.29 -1.69 16 27 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.06 1.28 8.12 -2.39 -0.02 1.27 16 30 H 0.09 4.90 5.87 -2.38 -0.01 4.88 16 31 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 32 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 33 H 0.04 1.67 8.03 -2.39 -0.02 1.65 16 34 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.41 9.29 6.70 -92.71 -0.62 8.67 16 36 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 2.40 6.27 -2.39 -0.01 2.38 16 38 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.07 2.36 6.29 -2.39 -0.02 2.34 16 41 H 0.10 1.33 7.54 -2.39 -0.02 1.31 16 42 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.13 1.29 8.14 -2.38 -0.02 1.27 16 44 H 0.10 1.47 7.55 -2.39 -0.02 1.45 16 Total: -1.00 -72.48 351.93 2.03 -70.45 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.38 Total: 23.50 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 5.51 Total: 10.09 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -4.28 Total: -113.70 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -1.60 Total: -37.86 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -72.48 2.03 -70.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081827947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.732 kcal (2) G-P(sol) polarization free energy of solvation -72.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds