Wall clock time and date at job start Tue Mar 31 2020 03:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99391 * 2 1 4 4 H 1.09000 * 110.64200 * 26.86036 * 3 2 1 5 5 C 1.54321 * 110.87115 * 263.60545 * 3 2 1 6 6 N 1.47027 * 107.27324 * 219.37325 * 5 3 2 7 7 C 1.36939 * 125.64852 * 178.98526 * 6 5 3 8 8 H 1.08003 * 119.99667 * 174.78861 * 7 6 5 9 9 C 1.38807 * 120.00195 * 354.79159 * 7 6 5 10 10 N 1.31622 * 119.99703 * 7.05166 * 9 7 6 11 11 Si 1.86800 * 120.00162 * 187.05007 * 9 7 6 12 12 H 1.48504 * 109.46901 * 94.98637 * 11 9 7 13 13 H 1.48500 * 109.47050 * 214.98618 * 11 9 7 14 14 H 1.48498 * 109.46951 * 334.98914 * 11 9 7 15 15 C 1.47429 * 108.70243 * 358.94742 * 6 5 3 16 16 C 1.54911 * 104.82951 * 24.12431 * 15 6 5 17 17 H 1.08995 * 111.03850 * 81.08404 * 16 15 6 18 18 N 1.46509 * 111.00089 * 204.91992 * 16 15 6 19 19 C 1.34773 * 119.99584 * 266.92167 * 18 16 15 20 20 O 1.21281 * 120.00320 * 0.27321 * 19 18 16 21 21 C 1.50703 * 119.99879 * 180.27841 * 19 18 16 22 22 C 1.53891 * 113.58667 * 279.21440 * 21 19 18 23 23 C 1.53415 * 86.82426 * 220.45499 * 22 21 19 24 24 C 1.52470 * 128.60641 * 165.10113 * 23 22 21 25 25 C 1.52462 * 128.52140 * 245.01467 * 23 22 21 26 26 C 1.53258 * 87.72344 * 25.01965 * 23 22 21 27 27 H 1.08998 * 109.47181 * 299.99864 * 1 2 3 28 28 H 1.08995 * 109.47069 * 60.00653 * 1 2 3 29 29 H 1.09007 * 109.46891 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.88760 * 338.79346 * 5 3 2 31 31 H 1.09005 * 109.88008 * 99.80497 * 5 3 2 32 32 H 0.97007 * 119.99378 * 180.02562 * 10 9 7 33 33 H 1.09001 * 110.36224 * 265.28687 * 15 6 5 34 34 H 1.08995 * 110.36867 * 142.96076 * 15 6 5 35 35 H 0.96997 * 119.99960 * 87.19833 * 18 16 15 36 36 H 1.08994 * 112.83293 * 50.32844 * 21 19 18 37 37 H 1.09002 * 113.64800 * 334.92826 * 22 21 19 38 38 H 1.08999 * 113.64272 * 105.92775 * 22 21 19 39 39 H 1.09000 * 117.51200 * 224.96100 * 24 23 22 40 40 H 1.08998 * 117.50792 * 10.05770 * 24 23 22 41 41 H 1.09005 * 117.50863 * 349.80315 * 25 23 22 42 42 H 1.08995 * 117.51896 * 134.90986 * 25 23 22 43 43 H 1.08995 * 113.64198 * 220.48895 * 26 23 22 44 44 H 1.08994 * 113.64720 * 89.47977 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3350 2.0266 0.4609 5 6 2.3804 1.7425 -1.4330 6 7 3.6668 2.4502 -1.3549 7 6 4.3515 2.9807 -2.4156 8 1 5.2492 3.5565 -2.2452 9 6 3.8917 2.7786 -3.7096 10 7 2.7276 2.1984 -3.9112 11 14 4.9250 3.3301 -5.1648 12 1 5.7393 2.1889 -5.6544 13 1 4.0334 3.8050 -6.2533 14 1 5.8236 4.4347 -4.7435 15 6 4.0970 2.4949 0.0545 16 6 3.3816 1.2959 0.7256 17 1 3.9169 0.3654 0.5370 18 7 3.2163 1.5211 2.1638 19 6 4.1436 1.0641 3.0284 20 8 5.1175 0.4707 2.6155 21 6 3.9705 1.2903 4.5082 22 6 4.3955 2.6953 4.9703 23 6 5.0088 2.0125 6.1995 24 6 5.9986 2.5825 7.2096 25 6 4.6021 2.1477 7.6627 26 6 5.1312 0.7393 5.3553 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 2.4776 0.8666 -2.0743 31 1 1.6123 2.4075 -1.8279 32 1 2.4065 2.0568 -4.8156 33 1 3.7839 3.4308 0.5171 34 1 5.1785 2.3790 0.1249 35 1 2.4374 1.9957 2.4940 36 1 2.9866 0.9914 4.8695 37 1 5.1317 3.1658 4.3186 38 1 3.5567 3.3503 5.2059 39 1 6.8405 1.9537 7.4994 40 1 6.2034 3.6521 7.1652 41 1 3.8884 2.9316 7.9164 42 1 4.5255 1.2332 8.2507 43 1 4.8814 -0.1716 5.8993 44 1 6.0725 0.6644 4.8110 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082116217.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:09 Heat of formation + Delta-G solvation = -1.583051 kcal Electronic energy + Delta-G solvation = -24076.029263 eV Core-core repulsion = 20610.067266 eV Total energy + Delta-G solvation = -3465.961996 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.45955 -38.90811 -37.79054 -35.88459 -33.99169 -33.73091 -31.70949 -28.83224 -27.34362 -26.11537 -25.92739 -24.96646 -23.66721 -22.68882 -20.55449 -20.44243 -19.81425 -18.54101 -17.42513 -16.85592 -16.34632 -15.68447 -15.60523 -15.32403 -14.88904 -14.55408 -14.30665 -14.25944 -13.92976 -13.23635 -13.06882 -12.67840 -12.40813 -12.31218 -12.13100 -11.89378 -11.74421 -11.73884 -11.47586 -11.20746 -11.01701 -10.80942 -10.73703 -10.54342 -10.48386 -10.14034 -9.98409 -9.90421 -9.79279 -9.52449 -9.09327 -8.71749 -8.53811 -6.88067 -5.74372 -3.08027 2.81658 3.28720 3.41555 3.46879 3.48285 3.57755 4.12134 4.14920 4.36828 4.50816 4.51636 4.60816 4.68478 5.05948 5.17272 5.20463 5.37287 5.39957 5.44367 5.47820 5.55757 5.58187 5.60279 5.64043 5.65572 5.72586 5.81567 5.86004 5.88155 5.92221 6.04482 6.07175 6.17228 6.19960 6.55544 6.64375 6.88910 7.25689 7.48269 7.71638 7.75197 7.87437 8.20614 8.46908 9.17519 9.77994 10.41658 11.37434 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019499 B = 0.003605 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.641991 B = 7765.624036 C = 8807.186356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.062 0.938 5 C 0.164 3.836 6 N -0.600 5.600 7 C -0.230 4.230 8 H 0.081 0.919 9 C -0.006 4.006 10 N -0.920 5.920 11 Si 0.913 3.087 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.280 1.280 15 C 0.131 3.869 16 C 0.131 3.869 17 H 0.106 0.894 18 N -0.715 5.715 19 C 0.522 3.478 20 O -0.538 6.538 21 C -0.131 4.131 22 C -0.081 4.081 23 C -0.163 4.163 24 C -0.166 4.166 25 C -0.152 4.152 26 C -0.075 4.075 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.253 0.747 33 H 0.022 0.978 34 H 0.050 0.950 35 H 0.396 0.604 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.847 -0.278 20.730 20.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.080 0.920 5 C 0.039 3.961 6 N -0.328 5.328 7 C -0.358 4.358 8 H 0.099 0.901 9 C -0.202 4.202 10 N -0.567 5.567 11 Si 0.743 3.257 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.206 1.206 15 C 0.004 3.996 16 C 0.025 3.975 17 H 0.124 0.876 18 N -0.365 5.365 19 C 0.308 3.692 20 O -0.414 6.414 21 C -0.153 4.153 22 C -0.119 4.119 23 C -0.163 4.163 24 C -0.203 4.203 25 C -0.189 4.189 26 C -0.112 4.112 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.040 0.960 34 H 0.068 0.932 35 H 0.229 0.771 36 H 0.130 0.870 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.089 0.911 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.060 -0.872 20.174 20.298 hybrid contribution -0.289 0.744 -0.676 1.046 sum -2.350 -0.128 19.498 19.639 Atomic orbital electron populations 1.22706 0.81799 1.02033 0.99700 1.87916 1.19032 1.27617 1.95031 1.23842 0.93014 0.84003 0.99459 0.92014 1.21557 0.88161 0.97280 0.89136 1.44253 1.21270 1.66431 1.00847 1.19076 1.05850 1.26805 0.84083 0.90132 1.24840 0.97311 1.00710 0.97348 1.69958 1.18432 1.48274 1.20027 0.86087 0.79293 0.78024 0.82303 1.21485 1.21769 1.20568 1.21823 0.97774 0.93811 0.86225 1.22405 0.96283 1.01021 0.77749 0.87598 1.45963 1.25106 1.58363 1.07020 1.20394 0.82648 0.78247 0.87951 1.90704 1.29982 1.41224 1.79502 1.22611 1.01384 0.99434 0.91824 1.22436 1.00265 0.94386 0.94817 1.22208 1.04481 0.99380 0.90228 1.22799 0.93109 1.01305 1.03081 1.22784 0.98351 1.03032 0.94759 1.22370 0.98678 0.95136 0.95035 0.94869 0.93672 0.90264 0.91850 0.93589 0.93657 0.96033 0.93216 0.77094 0.87042 0.89030 0.90642 0.88664 0.88688 0.88650 0.88644 0.91072 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.85 101.05 1.10 1.58 16 2 O -0.38 -7.05 10.44 -35.23 -0.37 -7.42 16 3 C 0.06 1.06 3.09 -24.90 -0.08 0.99 16 4 H 0.06 1.03 7.68 -51.93 -0.40 0.63 16 5 C 0.16 4.02 5.16 -3.06 -0.02 4.00 16 6 N -0.60 -15.58 3.40 -170.07 -0.58 -16.16 16 7 C -0.23 -6.50 10.27 -15.06 -0.15 -6.66 16 8 H 0.08 2.20 7.84 -52.48 -0.41 1.79 16 9 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 10 N -0.92 -27.05 10.36 55.49 0.57 -26.48 16 11 Si 0.91 22.29 29.56 -169.99 -5.02 17.26 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.13 2.83 6.93 -2.53 -0.02 2.81 16 16 C 0.13 2.49 3.15 -65.77 -0.21 2.28 16 17 H 0.11 2.33 7.54 -51.93 -0.39 1.94 16 18 N -0.71 -10.50 5.20 -51.72 -0.27 -10.77 16 19 C 0.52 7.85 7.35 -10.99 -0.08 7.77 16 20 O -0.54 -10.44 15.54 5.56 0.09 -10.35 16 21 C -0.13 -1.41 4.14 -90.84 -0.38 -1.78 16 22 C -0.08 -0.78 7.66 -26.05 -0.20 -0.98 16 23 C -0.16 -1.48 3.09 -154.71 -0.48 -1.96 16 24 C -0.17 -1.34 10.53 -26.94 -0.28 -1.62 16 25 C -0.15 -1.13 10.53 -26.94 -0.28 -1.41 16 26 C -0.07 -0.80 7.42 -26.13 -0.19 -0.99 16 27 H 0.03 0.39 8.11 -51.93 -0.42 -0.03 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 30 H 0.06 1.77 7.21 -51.93 -0.37 1.39 16 31 H 0.05 1.21 7.61 -51.93 -0.40 0.81 16 32 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.40 4.56 8.57 -40.82 -0.35 4.21 16 36 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.10 1.27 7.44 -51.93 -0.39 0.88 16 LS Contribution 359.41 15.07 5.42 5.42 Total: -1.00 -32.92 359.41 -8.86 -41.79 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -7.33 Total: 2.93 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -1.37 Total: 3.78 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.27 Total: -53.41 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.28 Total: -17.77 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.92 -8.86 -41.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082116217.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.203 kcal (2) G-P(sol) polarization free energy of solvation -32.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds