Wall clock time and date at job start Tue Mar 31 2020 03:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99391 * 2 1 4 4 H 1.09000 * 110.64200 * 26.86036 * 3 2 1 5 5 C 1.54321 * 110.87115 * 263.60545 * 3 2 1 6 6 N 1.47027 * 107.27324 * 219.37325 * 5 3 2 7 7 C 1.36939 * 125.64852 * 178.98526 * 6 5 3 8 8 H 1.08003 * 119.99667 * 174.78861 * 7 6 5 9 9 C 1.38807 * 120.00195 * 354.79159 * 7 6 5 10 10 N 1.31622 * 119.99703 * 7.05166 * 9 7 6 11 11 Si 1.86800 * 120.00162 * 187.05007 * 9 7 6 12 12 H 1.48504 * 109.46901 * 94.98637 * 11 9 7 13 13 H 1.48500 * 109.47050 * 214.98618 * 11 9 7 14 14 H 1.48498 * 109.46951 * 334.98914 * 11 9 7 15 15 C 1.47429 * 108.70243 * 358.94742 * 6 5 3 16 16 C 1.54911 * 104.82951 * 24.12431 * 15 6 5 17 17 H 1.08995 * 111.03850 * 81.08404 * 16 15 6 18 18 N 1.46509 * 111.00089 * 204.91992 * 16 15 6 19 19 C 1.34773 * 119.99584 * 266.92167 * 18 16 15 20 20 O 1.21281 * 120.00320 * 0.27321 * 19 18 16 21 21 C 1.50703 * 119.99879 * 180.27841 * 19 18 16 22 22 C 1.53891 * 113.58667 * 279.21440 * 21 19 18 23 23 C 1.53415 * 86.82426 * 220.45499 * 22 21 19 24 24 C 1.52470 * 128.60641 * 165.10113 * 23 22 21 25 25 C 1.52462 * 128.52140 * 245.01467 * 23 22 21 26 26 C 1.53258 * 87.72344 * 25.01965 * 23 22 21 27 27 H 1.08998 * 109.47181 * 299.99864 * 1 2 3 28 28 H 1.08995 * 109.47069 * 60.00653 * 1 2 3 29 29 H 1.09007 * 109.46891 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.88760 * 338.79346 * 5 3 2 31 31 H 1.09005 * 109.88008 * 99.80497 * 5 3 2 32 32 H 0.97007 * 119.99378 * 180.02562 * 10 9 7 33 33 H 1.09001 * 110.36224 * 265.28687 * 15 6 5 34 34 H 1.08995 * 110.36867 * 142.96076 * 15 6 5 35 35 H 0.96997 * 119.99960 * 87.19833 * 18 16 15 36 36 H 1.08994 * 112.83293 * 50.32844 * 21 19 18 37 37 H 1.09002 * 113.64800 * 334.92826 * 22 21 19 38 38 H 1.08999 * 113.64272 * 105.92775 * 22 21 19 39 39 H 1.09000 * 117.51200 * 224.96100 * 24 23 22 40 40 H 1.08998 * 117.50792 * 10.05770 * 24 23 22 41 41 H 1.09005 * 117.50863 * 349.80315 * 25 23 22 42 42 H 1.08995 * 117.51896 * 134.90986 * 25 23 22 43 43 H 1.08995 * 113.64198 * 220.48895 * 26 23 22 44 44 H 1.08994 * 113.64720 * 89.47977 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3350 2.0266 0.4609 5 6 2.3804 1.7425 -1.4330 6 7 3.6668 2.4502 -1.3549 7 6 4.3515 2.9807 -2.4156 8 1 5.2492 3.5565 -2.2452 9 6 3.8917 2.7786 -3.7096 10 7 2.7276 2.1984 -3.9112 11 14 4.9250 3.3301 -5.1648 12 1 5.7393 2.1889 -5.6544 13 1 4.0334 3.8050 -6.2533 14 1 5.8236 4.4347 -4.7435 15 6 4.0970 2.4949 0.0545 16 6 3.3816 1.2959 0.7256 17 1 3.9169 0.3654 0.5370 18 7 3.2163 1.5211 2.1638 19 6 4.1436 1.0641 3.0284 20 8 5.1175 0.4707 2.6155 21 6 3.9705 1.2903 4.5082 22 6 4.3955 2.6953 4.9703 23 6 5.0088 2.0125 6.1995 24 6 5.9986 2.5825 7.2096 25 6 4.6021 2.1477 7.6627 26 6 5.1312 0.7393 5.3553 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 2.4776 0.8666 -2.0743 31 1 1.6123 2.4075 -1.8279 32 1 2.4065 2.0568 -4.8156 33 1 3.7839 3.4308 0.5171 34 1 5.1785 2.3790 0.1249 35 1 2.4374 1.9957 2.4940 36 1 2.9866 0.9914 4.8695 37 1 5.1317 3.1658 4.3186 38 1 3.5567 3.3503 5.2059 39 1 6.8405 1.9537 7.4994 40 1 6.2034 3.6521 7.1652 41 1 3.8884 2.9316 7.9164 42 1 4.5255 1.2332 8.2507 43 1 4.8814 -0.1716 5.8993 44 1 6.0725 0.6644 4.8110 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082116217.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:09 Heat of formation + Delta-G solvation = -23.973819 kcal Electronic energy + Delta-G solvation = -24077.000199 eV Core-core repulsion = 20610.067266 eV Total energy + Delta-G solvation = -3466.932933 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.52486 -40.22221 -39.03403 -37.50702 -35.59139 -34.52662 -33.60626 -30.60908 -29.02863 -27.53906 -26.72548 -26.45500 -25.09956 -23.26852 -22.29569 -22.00508 -21.16254 -19.28863 -19.11150 -18.30268 -17.76889 -17.24918 -16.58761 -16.45323 -16.00016 -15.95963 -15.79753 -15.52449 -15.29019 -15.04712 -14.59938 -14.09175 -13.66773 -13.57045 -13.38834 -13.21275 -13.01436 -12.96882 -12.79127 -12.61413 -12.40734 -12.31910 -12.27813 -12.06900 -11.89266 -11.64699 -11.29467 -11.21704 -10.81272 -10.76844 -10.60913 -10.43122 -10.07417 -8.97966 -7.90451 -5.27226 1.44150 1.47576 1.55758 1.62425 2.07511 2.45439 2.76920 2.88730 3.29342 3.41538 3.52732 3.55788 3.69647 3.78688 3.91713 3.93186 3.98011 4.07340 4.24853 4.39276 4.44170 4.45937 4.59625 4.64559 4.79563 4.81034 4.82232 4.84854 4.87094 4.87235 4.99926 5.04220 5.08212 5.27893 5.31114 5.33706 5.36479 5.39989 5.49829 5.64133 6.11970 6.31313 6.58379 7.02861 7.29106 7.68057 8.31128 9.19571 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019499 B = 0.003605 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.641991 B = 7765.624036 C = 8807.186356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.078 3.922 4 H 0.098 0.902 5 C 0.173 3.827 6 N -0.622 5.622 7 C -0.250 4.250 8 H 0.083 0.917 9 C -0.061 4.061 10 N -0.946 5.946 11 Si 0.980 3.020 12 H -0.290 1.290 13 H -0.290 1.290 14 H -0.266 1.266 15 C 0.132 3.868 16 C 0.148 3.852 17 H 0.071 0.929 18 N -0.699 5.699 19 C 0.519 3.481 20 O -0.588 6.588 21 C -0.120 4.120 22 C -0.077 4.077 23 C -0.172 4.172 24 C -0.173 4.173 25 C -0.134 4.134 26 C -0.082 4.082 27 H 0.066 0.934 28 H 0.035 0.965 29 H 0.100 0.900 30 H 0.017 0.983 31 H 0.021 0.979 32 H 0.249 0.751 33 H 0.044 0.956 34 H 0.033 0.967 35 H 0.417 0.583 36 H 0.144 0.856 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.080 0.920 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.077 0.685 23.373 23.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C 0.018 3.982 4 H 0.116 0.884 5 C 0.047 3.953 6 N -0.350 5.350 7 C -0.378 4.378 8 H 0.101 0.899 9 C -0.254 4.254 10 N -0.594 5.594 11 Si 0.807 3.193 12 H -0.217 1.217 13 H -0.216 1.216 14 H -0.191 1.191 15 C 0.005 3.995 16 C 0.041 3.959 17 H 0.089 0.911 18 N -0.350 5.350 19 C 0.307 3.693 20 O -0.467 6.467 21 C -0.141 4.141 22 C -0.114 4.114 23 C -0.172 4.172 24 C -0.210 4.210 25 C -0.170 4.170 26 C -0.120 4.120 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.118 0.882 30 H 0.036 0.964 31 H 0.039 0.961 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.254 0.746 36 H 0.162 0.838 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.129 0.871 42 H 0.123 0.877 43 H 0.099 0.901 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.317 0.112 22.873 23.113 hybrid contribution 0.113 0.404 -1.464 1.523 sum -3.204 0.516 21.409 21.654 Atomic orbital electron populations 1.22999 0.79257 1.03899 1.00827 1.87898 1.21853 1.27098 1.94924 1.23490 0.93667 0.85224 0.95786 0.88393 1.21297 0.87108 0.94732 0.92124 1.44519 1.21950 1.66302 1.02195 1.19450 1.06159 1.26936 0.85271 0.89906 1.25694 0.98469 1.01291 0.99950 1.70171 1.19783 1.49385 1.20110 0.85048 0.77744 0.77752 0.78715 1.21671 1.21619 1.19052 1.21925 0.97124 0.95798 0.84616 1.21818 0.95551 0.98195 0.80322 0.91104 1.45730 1.26020 1.58437 1.04862 1.21273 0.81481 0.76784 0.89742 1.90691 1.32045 1.43378 1.80616 1.22709 1.02929 1.00585 0.87887 1.22399 1.00675 0.93829 0.94510 1.22126 1.06059 0.98057 0.90956 1.22901 0.93769 1.01647 1.02701 1.22901 0.97694 1.03709 0.92724 1.22335 0.97458 0.96718 0.95497 0.91523 0.94637 0.88197 0.96436 0.96067 0.94159 0.93809 0.94908 0.74596 0.83806 0.90902 0.88062 0.88710 0.88165 0.87089 0.87740 0.90096 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.85 113.37 1.23 1.91 16 2 O -0.40 -14.59 10.44 -148.98 -1.56 -16.14 16 3 C 0.08 2.91 3.09 31.78 0.10 3.01 16 4 H 0.10 2.98 7.68 -2.39 -0.02 2.96 16 5 C 0.17 8.76 5.16 86.73 0.45 9.21 16 6 N -0.62 -33.21 3.40 -691.97 -2.35 -35.56 16 7 C -0.25 -14.46 10.27 84.03 0.86 -13.60 16 8 H 0.08 4.61 7.84 -2.91 -0.02 4.59 16 9 C -0.06 -3.52 5.48 84.86 0.46 -3.05 16 10 N -0.95 -57.61 10.36 21.65 0.22 -57.39 16 11 Si 0.98 46.66 29.56 68.60 2.03 48.69 16 12 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 13 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 14 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 15 C 0.13 5.75 6.93 86.85 0.60 6.36 16 16 C 0.15 5.64 3.15 46.38 0.15 5.79 16 17 H 0.07 3.24 7.54 -2.39 -0.02 3.23 16 18 N -0.70 -19.34 5.20 -435.94 -2.27 -21.61 16 19 C 0.52 15.15 7.35 87.66 0.64 15.79 16 20 O -0.59 -23.41 15.54 -3.03 -0.05 -23.46 16 21 C -0.12 -2.29 4.14 -10.94 -0.05 -2.33 16 22 C -0.08 -1.26 7.66 31.03 0.24 -1.02 16 23 C -0.17 -2.71 3.09 -52.31 -0.16 -2.87 16 24 C -0.17 -2.41 10.53 30.46 0.32 -2.09 16 25 C -0.13 -1.49 10.53 30.46 0.32 -1.17 16 26 C -0.08 -1.67 7.42 30.98 0.23 -1.44 16 27 H 0.07 1.32 8.11 -2.39 -0.02 1.30 16 28 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 30 H 0.02 1.03 7.21 -2.39 -0.02 1.01 16 31 H 0.02 1.16 7.61 -2.38 -0.02 1.14 16 32 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 33 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.42 8.12 8.57 -92.71 -0.79 7.33 16 36 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.07 1.48 8.09 -2.39 -0.02 1.46 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 42 H 0.10 1.00 8.14 -2.39 -0.02 0.99 16 43 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.07 1.85 7.44 -2.39 -0.02 1.83 16 Total: -1.00 -75.87 359.41 1.62 -74.24 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.19 Total: 16.73 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: 5.40 Total: 14.51 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -4.39 Total: -114.56 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -1.60 Total: -39.61 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -75.87 1.62 -74.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082116217.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.271 kcal (2) G-P(sol) polarization free energy of solvation -75.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds