Wall clock time and date at job start Tue Mar 31 2020 03:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42910 * 113.99859 * 2 1 4 4 H 1.09000 * 109.46582 * 5.80266 * 3 2 1 5 5 C 1.50696 * 109.47029 * 125.80657 * 3 2 1 6 6 O 1.21275 * 120.00250 * 4.99393 * 5 3 2 7 7 N 1.34775 * 119.99690 * 185.00398 * 5 3 2 8 8 C 1.47286 * 136.54514 * 359.62159 * 7 5 3 9 9 C 1.54370 * 87.50203 * 151.47242 * 8 7 5 10 10 H 1.09000 * 114.93104 * 141.75742 * 9 8 7 11 11 C 1.53072 * 112.44509 * 274.15537 * 9 8 7 12 12 C 1.53137 * 109.21323 * 142.78139 * 11 9 8 13 13 N 1.46535 * 108.25292 * 301.58587 * 12 11 9 14 14 C 1.36938 * 119.73916 * 236.40136 * 13 12 11 15 15 H 1.07994 * 120.00464 * 25.63949 * 14 13 12 16 16 C 1.38819 * 120.00112 * 205.63531 * 14 13 12 17 17 N 1.31624 * 119.99602 * 13.64590 * 16 14 13 18 18 Si 1.86799 * 120.00300 * 193.64868 * 16 14 13 19 19 H 1.48494 * 109.46977 * 59.99690 * 18 16 14 20 20 H 1.48494 * 109.47013 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46771 * 299.99910 * 18 16 14 22 22 C 1.44776 * 120.89508 * 55.60952 * 13 12 11 23 23 C 1.46468 * 136.54153 * 179.97438 * 7 5 3 24 24 H 1.09007 * 111.43974 * 96.34345 * 23 7 5 25 25 C 1.53001 * 109.47022 * 245.80820 * 3 2 1 26 26 C 1.53000 * 117.50328 * 58.93873 * 25 3 2 27 27 C 1.53005 * 60.03373 * 252.52458 * 26 25 3 28 28 H 1.09001 * 109.47619 * 293.95801 * 1 2 3 29 29 H 1.09002 * 109.47453 * 53.96250 * 1 2 3 30 30 H 1.08999 * 109.46768 * 173.95494 * 1 2 3 31 31 H 1.09006 * 113.52923 * 266.09110 * 8 7 5 32 32 H 1.09000 * 113.52972 * 36.72555 * 8 7 5 33 33 H 1.09002 * 109.50795 * 262.70378 * 11 9 8 34 34 H 1.09001 * 109.51342 * 22.85434 * 11 9 8 35 35 H 1.08999 * 109.71096 * 61.27999 * 12 11 9 36 36 H 1.09005 * 109.70717 * 181.89927 * 12 11 9 37 37 H 0.96996 * 119.99673 * 180.02562 * 17 16 14 38 38 H 1.09006 * 109.77206 * 199.61857 * 22 13 12 39 39 H 1.09002 * 107.25404 * 81.73520 * 22 13 12 40 40 H 1.09004 * 115.55848 * 204.63661 * 25 3 2 41 41 H 1.09000 * 117.49864 * 145.01964 * 26 25 3 42 42 H 1.08997 * 117.49342 * 0.02562 * 26 25 3 43 43 H 1.08998 * 117.50233 * 107.47561 * 27 26 25 44 44 H 1.08999 * 117.49539 * 252.47708 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.2239 2.0532 0.1039 5 6 2.9738 1.4264 1.1523 6 8 3.2146 0.4607 1.8453 7 7 3.5680 2.6077 1.4127 8 6 3.5543 3.9620 0.8339 9 6 3.8776 4.4955 2.2459 10 1 4.5720 5.3354 2.2719 11 6 2.6204 4.7058 3.0933 12 6 2.9203 4.3196 4.5445 13 7 3.3552 2.9205 4.5666 14 6 2.6885 2.0141 5.3471 15 1 1.6538 2.1827 5.6065 16 6 3.3425 0.8784 5.8047 17 7 4.6537 0.7966 5.7240 18 14 2.3618 -0.5339 6.5349 19 1 1.4100 -1.0524 5.5199 20 1 3.2881 -1.6193 6.9459 21 1 1.6077 -0.0520 7.7201 22 6 4.4725 2.4765 3.7600 23 6 4.5239 3.1232 2.3955 24 1 5.5411 3.1158 2.0038 25 6 2.7576 1.5310 -1.3158 26 6 1.9529 1.4244 -2.6128 27 6 2.9466 0.3232 -2.2372 28 1 -0.3634 0.4173 0.9391 29 1 -0.3634 0.6046 -0.8310 30 1 -0.3633 -1.0220 -0.1082 31 1 4.3515 4.1343 0.1108 32 1 2.5752 4.2676 0.4650 33 1 2.3228 5.7536 3.0494 34 1 1.8138 4.0811 2.7094 35 1 3.7120 4.9569 4.9385 36 1 2.0204 4.4343 5.1489 37 1 5.1107 0.0029 6.0434 38 1 4.4297 1.3946 3.6344 39 1 5.3835 2.7289 4.3027 40 1 3.5602 2.2678 -1.2805 41 1 2.2260 2.0912 -3.4307 42 1 0.8909 1.1941 -2.5285 43 1 2.5383 -0.6314 -1.9055 44 1 3.8731 0.2653 -2.8083 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084316125.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:35 Heat of formation + Delta-G solvation = 24.664994 kcal Electronic energy + Delta-G solvation = -25690.879129 eV Core-core repulsion = 22226.055334 eV Total energy + Delta-G solvation = -3464.823796 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.58282 -39.06704 -36.93134 -35.89817 -35.20049 -32.12544 -30.18905 -29.89120 -27.89009 -26.87298 -25.85901 -23.83287 -22.82588 -22.40937 -21.37801 -20.73259 -19.80622 -17.85318 -17.18040 -16.61320 -16.08660 -15.99541 -15.62939 -15.15652 -14.60213 -14.17489 -14.06133 -13.70090 -13.45090 -13.24489 -13.08089 -12.84180 -12.60467 -12.31765 -11.93513 -11.73664 -11.52051 -11.40374 -11.35523 -11.04979 -10.65253 -10.60341 -10.55894 -10.43759 -10.23081 -10.16100 -9.94276 -9.82689 -9.74162 -9.39328 -8.69256 -8.22104 -8.05609 -6.52434 -5.60491 -3.04191 3.01356 3.25643 3.50704 3.57272 3.60946 3.73984 3.99914 4.55800 4.63997 4.68086 4.71521 4.85123 5.01735 5.12973 5.23589 5.27932 5.35171 5.46483 5.51019 5.54862 5.57510 5.58894 5.65693 5.70452 5.75234 5.82127 5.91702 5.99721 6.14464 6.17195 6.21289 6.34098 6.41151 6.55468 6.61803 6.80509 7.02216 7.12567 7.57402 7.82668 7.99672 8.38474 8.63639 8.86196 9.42213 10.06111 10.51878 11.47166 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014729 B = 0.006519 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.604288 B = 4294.432580 C = 5405.082466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.110 3.890 4 H 0.085 0.915 5 C 0.534 3.466 6 O -0.495 6.495 7 N -0.633 5.633 8 C 0.095 3.905 9 C -0.113 4.113 10 H 0.090 0.910 11 C -0.114 4.114 12 C 0.149 3.851 13 N -0.584 5.584 14 C -0.256 4.256 15 H 0.060 0.940 16 C 0.013 3.987 17 N -0.903 5.903 18 Si 0.902 3.098 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.168 3.832 23 C 0.119 3.881 24 H 0.071 0.929 25 C -0.168 4.168 26 C -0.175 4.175 27 C -0.159 4.159 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.020 0.980 36 H 0.055 0.945 37 H 0.252 0.748 38 H 0.102 0.898 39 H 0.028 0.972 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.737 7.481 -16.510 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.271 6.271 3 C 0.049 3.951 4 H 0.102 0.898 5 C 0.321 3.679 6 O -0.367 6.367 7 N -0.372 5.372 8 C -0.028 4.028 9 C -0.132 4.132 10 H 0.108 0.892 11 C -0.154 4.154 12 C 0.023 3.977 13 N -0.306 5.306 14 C -0.386 4.386 15 H 0.078 0.922 16 C -0.186 4.186 17 N -0.547 5.547 18 Si 0.732 3.268 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.212 1.212 22 C 0.041 3.959 23 C 0.015 3.985 24 H 0.089 0.911 25 C -0.186 4.186 26 C -0.212 4.212 27 C -0.196 4.196 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.120 0.880 39 H 0.045 0.955 40 H 0.132 0.868 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.126 0.874 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.492 6.359 -16.099 17.882 hybrid contribution -0.604 -0.490 0.155 0.793 sum -5.096 5.868 -15.944 17.738 Atomic orbital electron populations 1.22925 0.81022 1.02863 1.00042 1.88010 1.19407 1.25207 1.94429 1.21300 0.95172 0.86559 0.92112 0.89771 1.19853 0.81823 0.81172 0.85018 1.90798 1.61569 1.35816 1.48526 1.49472 1.45967 1.08381 1.33363 1.23348 1.01012 0.81744 0.96736 1.22785 0.99018 0.97069 0.94372 0.89170 1.21813 0.95498 0.99429 0.98643 1.20711 0.97622 0.86999 0.92393 1.43220 1.36676 1.02653 1.48075 1.19029 0.93047 1.01402 1.25093 0.92232 1.24940 0.95142 0.99674 0.98822 1.69997 1.06269 1.28277 1.50205 0.86380 0.79311 0.82500 0.78597 1.21004 1.21654 1.21189 1.20048 0.90271 1.00933 0.84617 1.22654 0.91537 0.90674 0.93599 0.91091 1.22568 1.02911 1.03258 0.89909 1.22949 0.97695 1.03007 0.97544 1.22900 1.00546 0.94669 1.01464 0.93589 0.94197 0.89349 0.90549 0.91230 0.92666 0.92283 0.96222 0.92625 0.93753 0.87972 0.95459 0.86790 0.88716 0.89017 0.87430 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.71 101.05 1.08 1.44 16 2 O -0.35 -5.97 8.24 -55.09 -0.45 -6.42 16 3 C 0.11 1.74 2.87 -27.88 -0.08 1.66 16 4 H 0.08 1.18 7.61 -51.93 -0.40 0.78 16 5 C 0.53 11.04 7.35 -10.99 -0.08 10.96 16 6 O -0.49 -13.19 15.75 -14.30 -0.23 -13.41 16 7 N -0.63 -11.56 3.28 -187.52 -0.61 -12.17 16 8 C 0.10 1.24 6.89 -11.39 -0.08 1.16 16 9 C -0.11 -1.71 4.52 -90.16 -0.41 -2.12 16 10 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 11 C -0.11 -1.89 5.75 -26.62 -0.15 -2.04 16 12 C 0.15 3.10 6.47 -3.95 -0.03 3.08 16 13 N -0.58 -15.16 3.01 -175.63 -0.53 -15.69 16 14 C -0.26 -7.47 9.51 -15.06 -0.14 -7.61 16 15 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 16 C 0.01 0.39 4.95 -17.43 -0.09 0.30 16 17 N -0.90 -28.02 10.91 55.49 0.61 -27.41 16 18 Si 0.90 23.89 29.58 -169.99 -5.03 18.86 16 19 H -0.28 -7.65 7.11 56.52 0.40 -7.25 16 20 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 C 0.17 4.26 4.51 -5.93 -0.03 4.24 16 23 C 0.12 2.31 4.03 -77.70 -0.31 1.99 16 24 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 25 C -0.17 -2.12 5.53 -90.58 -0.50 -2.62 16 26 C -0.17 -1.73 10.17 -26.73 -0.27 -2.01 16 27 C -0.16 -1.89 9.88 -26.69 -0.26 -2.16 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.04 0.39 7.34 -51.93 -0.38 0.01 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 1.07 7.76 -51.93 -0.40 0.66 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 1.14 7.87 -51.93 -0.41 0.73 16 37 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.10 3.08 5.02 -51.93 -0.26 2.82 16 39 H 0.03 0.75 7.93 -51.93 -0.41 0.34 16 40 H 0.11 1.37 7.25 -51.93 -0.38 0.99 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 0.87 7.36 -51.93 -0.38 0.49 16 43 H 0.11 1.44 7.08 -51.93 -0.37 1.07 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 347.98 15.07 5.24 5.24 Total: -1.00 -35.87 347.98 -9.51 -45.38 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -7.16 Total: -0.66 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -1.35 Total: 6.28 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.54 Total: -55.27 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.68 Total: -19.83 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -5.03 Total: 18.86 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.87 -9.51 -45.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084316125.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.046 kcal (2) G-P(sol) polarization free energy of solvation -35.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds