Wall clock time and date at job start Tue Mar 31 2020 03:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42910 * 113.99859 * 2 1 4 4 H 1.09000 * 109.46582 * 5.80266 * 3 2 1 5 5 C 1.50696 * 109.47029 * 125.80657 * 3 2 1 6 6 O 1.21275 * 120.00250 * 4.99393 * 5 3 2 7 7 N 1.34775 * 119.99690 * 185.00398 * 5 3 2 8 8 C 1.47286 * 136.54514 * 359.62159 * 7 5 3 9 9 C 1.54370 * 87.50203 * 151.47242 * 8 7 5 10 10 H 1.09000 * 114.93104 * 141.75742 * 9 8 7 11 11 C 1.53072 * 112.44509 * 274.15537 * 9 8 7 12 12 C 1.53137 * 109.21323 * 142.78139 * 11 9 8 13 13 N 1.46535 * 108.25292 * 301.58587 * 12 11 9 14 14 C 1.36938 * 119.73916 * 236.40136 * 13 12 11 15 15 H 1.07994 * 120.00464 * 25.63949 * 14 13 12 16 16 C 1.38819 * 120.00112 * 205.63531 * 14 13 12 17 17 N 1.31624 * 119.99602 * 13.64590 * 16 14 13 18 18 Si 1.86799 * 120.00300 * 193.64868 * 16 14 13 19 19 H 1.48494 * 109.46977 * 59.99690 * 18 16 14 20 20 H 1.48494 * 109.47013 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46771 * 299.99910 * 18 16 14 22 22 C 1.44776 * 120.89508 * 55.60952 * 13 12 11 23 23 C 1.46468 * 136.54153 * 179.97438 * 7 5 3 24 24 H 1.09007 * 111.43974 * 96.34345 * 23 7 5 25 25 C 1.53001 * 109.47022 * 245.80820 * 3 2 1 26 26 C 1.53000 * 117.50328 * 58.93873 * 25 3 2 27 27 C 1.53005 * 60.03373 * 252.52458 * 26 25 3 28 28 H 1.09001 * 109.47619 * 293.95801 * 1 2 3 29 29 H 1.09002 * 109.47453 * 53.96250 * 1 2 3 30 30 H 1.08999 * 109.46768 * 173.95494 * 1 2 3 31 31 H 1.09006 * 113.52923 * 266.09110 * 8 7 5 32 32 H 1.09000 * 113.52972 * 36.72555 * 8 7 5 33 33 H 1.09002 * 109.50795 * 262.70378 * 11 9 8 34 34 H 1.09001 * 109.51342 * 22.85434 * 11 9 8 35 35 H 1.08999 * 109.71096 * 61.27999 * 12 11 9 36 36 H 1.09005 * 109.70717 * 181.89927 * 12 11 9 37 37 H 0.96996 * 119.99673 * 180.02562 * 17 16 14 38 38 H 1.09006 * 109.77206 * 199.61857 * 22 13 12 39 39 H 1.09002 * 107.25404 * 81.73520 * 22 13 12 40 40 H 1.09004 * 115.55848 * 204.63661 * 25 3 2 41 41 H 1.09000 * 117.49864 * 145.01964 * 26 25 3 42 42 H 1.08997 * 117.49342 * 0.02562 * 26 25 3 43 43 H 1.08998 * 117.50233 * 107.47561 * 27 26 25 44 44 H 1.08999 * 117.49539 * 252.47708 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.2239 2.0532 0.1039 5 6 2.9738 1.4264 1.1523 6 8 3.2146 0.4607 1.8453 7 7 3.5680 2.6077 1.4127 8 6 3.5543 3.9620 0.8339 9 6 3.8776 4.4955 2.2459 10 1 4.5720 5.3354 2.2719 11 6 2.6204 4.7058 3.0933 12 6 2.9203 4.3196 4.5445 13 7 3.3552 2.9205 4.5666 14 6 2.6885 2.0141 5.3471 15 1 1.6538 2.1827 5.6065 16 6 3.3425 0.8784 5.8047 17 7 4.6537 0.7966 5.7240 18 14 2.3618 -0.5339 6.5349 19 1 1.4100 -1.0524 5.5199 20 1 3.2881 -1.6193 6.9459 21 1 1.6077 -0.0520 7.7201 22 6 4.4725 2.4765 3.7600 23 6 4.5239 3.1232 2.3955 24 1 5.5411 3.1158 2.0038 25 6 2.7576 1.5310 -1.3158 26 6 1.9529 1.4244 -2.6128 27 6 2.9466 0.3232 -2.2372 28 1 -0.3634 0.4173 0.9391 29 1 -0.3634 0.6046 -0.8310 30 1 -0.3633 -1.0220 -0.1082 31 1 4.3515 4.1343 0.1108 32 1 2.5752 4.2676 0.4650 33 1 2.3228 5.7536 3.0494 34 1 1.8138 4.0811 2.7094 35 1 3.7120 4.9569 4.9385 36 1 2.0204 4.4343 5.1489 37 1 5.1107 0.0029 6.0434 38 1 4.4297 1.3946 3.6344 39 1 5.3835 2.7289 4.3027 40 1 3.5602 2.2678 -1.2805 41 1 2.2260 2.0912 -3.4307 42 1 0.8909 1.1941 -2.5285 43 1 2.5383 -0.6314 -1.9055 44 1 3.8731 0.2653 -2.8083 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084316125.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:35 Heat of formation + Delta-G solvation = -0.024575 kcal Electronic energy + Delta-G solvation = -25691.949749 eV Core-core repulsion = 22226.055334 eV Total energy + Delta-G solvation = -3465.894416 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.98334 -40.28197 -38.43862 -37.16514 -36.82101 -34.01021 -31.97102 -31.40951 -29.28098 -28.47265 -26.97923 -25.69762 -24.38472 -23.22096 -22.76949 -22.04393 -21.15093 -19.55319 -18.71275 -17.87736 -17.60150 -17.31454 -17.11108 -16.71933 -16.06941 -15.64347 -15.59364 -15.21817 -14.96911 -14.73018 -14.39742 -14.34046 -14.07913 -13.86230 -13.50389 -13.15081 -12.80217 -12.74733 -12.66894 -12.44994 -12.37313 -12.31699 -12.24333 -11.98625 -11.78690 -11.53480 -11.47019 -11.25194 -10.99462 -10.95092 -10.58281 -10.06278 -9.51529 -8.66325 -7.86343 -5.31674 1.31647 1.40653 1.43131 1.69549 1.82846 2.46283 2.73975 2.98711 3.28501 3.43593 3.45812 3.68259 3.74464 3.84442 3.98949 4.13004 4.19411 4.23172 4.34072 4.41573 4.47150 4.52901 4.57600 4.60891 4.70264 4.72340 4.77407 4.83420 4.85258 4.93620 4.99848 5.07325 5.13575 5.20143 5.32452 5.33182 5.43021 5.54774 5.70156 5.82638 6.05383 6.38836 6.98008 7.19164 7.36560 7.97967 8.33375 9.17018 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014729 B = 0.006519 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.604288 B = 4294.432580 C = 5405.082466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.387 6.387 3 C 0.119 3.881 4 H 0.105 0.895 5 C 0.519 3.481 6 O -0.578 6.578 7 N -0.637 5.637 8 C 0.111 3.889 9 C -0.101 4.101 10 H 0.131 0.869 11 C -0.103 4.103 12 C 0.139 3.861 13 N -0.601 5.601 14 C -0.259 4.259 15 H 0.059 0.941 16 C -0.046 4.046 17 N -0.933 5.933 18 Si 0.955 3.045 19 H -0.295 1.295 20 H -0.293 1.293 21 H -0.263 1.263 22 C 0.182 3.818 23 C 0.103 3.897 24 H 0.087 0.913 25 C -0.180 4.180 26 C -0.138 4.138 27 C -0.177 4.177 28 H 0.030 0.970 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.041 0.959 35 H 0.028 0.972 36 H 0.051 0.949 37 H 0.244 0.756 38 H 0.046 0.954 39 H -0.011 1.011 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.203 10.856 -19.724 23.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.305 6.305 3 C 0.058 3.942 4 H 0.123 0.877 5 C 0.308 3.692 6 O -0.457 6.457 7 N -0.374 5.374 8 C -0.010 4.010 9 C -0.120 4.120 10 H 0.149 0.851 11 C -0.142 4.142 12 C 0.014 3.986 13 N -0.325 5.325 14 C -0.389 4.389 15 H 0.077 0.923 16 C -0.241 4.241 17 N -0.579 5.579 18 Si 0.784 3.216 19 H -0.222 1.222 20 H -0.219 1.219 21 H -0.188 1.188 22 C 0.055 3.945 23 C -0.002 4.002 24 H 0.105 0.895 25 C -0.198 4.198 26 C -0.175 4.175 27 C -0.214 4.214 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.135 0.865 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.007 0.993 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.117 0.883 43 H 0.103 0.897 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.988 9.835 -19.342 22.510 hybrid contribution -0.152 -1.491 1.200 1.920 sum -6.140 8.344 -18.142 20.892 Atomic orbital electron populations 1.23121 0.79202 1.04322 1.00676 1.87986 1.21580 1.26397 1.94491 1.21317 0.94675 0.86638 0.91553 0.87693 1.20982 0.82085 0.80721 0.85390 1.90757 1.64568 1.38780 1.51577 1.49654 1.44700 1.09781 1.33236 1.23606 1.04211 0.77235 0.95967 1.22832 0.98409 0.95341 0.95410 0.85130 1.21694 0.95728 1.01791 0.94999 1.20985 0.97463 0.84154 0.95983 1.43470 1.36409 1.04559 1.48023 1.19354 0.93174 1.02128 1.24293 0.92323 1.25662 0.95997 1.02072 1.00389 1.70177 1.07579 1.28253 1.51907 0.85519 0.77923 0.79868 0.78266 1.22206 1.21950 1.18820 1.19615 0.88600 0.98395 0.87850 1.22691 0.93583 0.93515 0.90414 0.89480 1.22526 1.04131 1.04008 0.89170 1.23059 0.97463 1.01035 0.95947 1.22923 1.02167 0.94130 1.02170 0.95091 0.90620 0.88308 0.86545 0.88153 0.87834 0.93994 0.95409 0.93027 0.94740 0.93572 0.99300 0.85698 0.85802 0.88287 0.89738 0.87867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 10.71 113.37 1.21 1.77 16 2 O -0.39 -13.15 8.24 -129.99 -1.07 -14.22 16 3 C 0.12 3.62 2.87 29.85 0.09 3.71 16 4 H 0.11 2.64 7.61 -2.39 -0.02 2.62 16 5 C 0.52 21.77 7.35 87.66 0.64 22.42 16 6 O -0.58 -33.00 15.75 15.98 0.25 -32.75 16 7 N -0.64 -22.40 3.28 -865.59 -2.84 -25.24 16 8 C 0.11 2.29 6.89 81.19 0.56 2.85 16 9 C -0.10 -2.61 4.52 -10.49 -0.05 -2.66 16 10 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 11 C -0.10 -3.02 5.75 30.66 0.18 -2.84 16 12 C 0.14 5.64 6.47 86.42 0.56 6.20 16 13 N -0.60 -32.18 3.01 -709.58 -2.14 -34.32 16 14 C -0.26 -15.72 9.51 84.03 0.80 -14.92 16 15 H 0.06 3.48 7.83 -2.91 -0.02 3.46 16 16 C -0.05 -2.89 4.95 84.86 0.42 -2.47 16 17 N -0.93 -61.72 10.91 21.65 0.24 -61.49 16 18 Si 0.96 51.51 29.58 68.60 2.03 53.54 16 19 H -0.29 -16.26 7.11 99.48 0.71 -15.56 16 20 H -0.29 -15.79 7.11 99.48 0.71 -15.08 16 21 H -0.26 -13.07 7.11 99.48 0.71 -12.36 16 22 C 0.18 9.73 4.51 86.08 0.39 10.12 16 23 C 0.10 3.90 4.03 38.68 0.16 4.05 16 24 H 0.09 3.00 8.14 -2.38 -0.02 2.98 16 25 C -0.18 -4.02 5.53 -10.77 -0.06 -4.08 16 26 C -0.14 -2.13 10.17 30.60 0.31 -1.82 16 27 C -0.18 -3.88 9.88 30.62 0.30 -3.58 16 28 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 1.28 7.34 -2.39 -0.02 1.26 16 30 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.10 1.57 8.10 -2.39 -0.02 1.56 16 33 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.04 1.38 7.76 -2.39 -0.02 1.36 16 35 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.05 2.09 7.87 -2.38 -0.02 2.07 16 37 H 0.24 15.84 8.31 -92.71 -0.77 15.06 16 38 H 0.05 2.99 5.02 -2.38 -0.01 2.98 16 39 H -0.01 -0.63 7.93 -2.39 -0.02 -0.65 16 40 H 0.13 2.49 7.25 -2.38 -0.02 2.47 16 41 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.10 1.41 7.36 -2.39 -0.02 1.39 16 43 H 0.08 2.26 7.08 -2.39 -0.02 2.24 16 44 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -89.54 347.98 2.96 -86.58 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 0.98 Total: 9.15 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: 5.51 Total: 18.74 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -4.74 Total: -121.04 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -0.82 Total: -46.97 kcal Atomic # 14 Polarization: 51.51 SS G_CDS: 2.03 Total: 53.54 kcal Total: -89.54 2.96 -86.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084316125.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.553 kcal (2) G-P(sol) polarization free energy of solvation -89.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds